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Identification of novel diagnostic tumor marker genes based on genome wide methylation analysis for renal cell carcinoma

Research Project

Project/Area Number 17591683
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Urology
Research InstitutionKochi University

Principal Investigator

KAMADA Masayuki  Kochi University, Kochi Medical School Hospital, Lecturer (90304683)

Co-Investigator(Kenkyū-buntansha) SHUIN Taro  Kochi University, Kochi Medical School, Professor (80179019)
OUKOUCHI Hisao  Kochi University, Kochi Medical School Hospital, Medical Doctor (60380333)
Project Period (FY) 2005 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2006: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2005: ¥2,800,000 (Direct Cost: ¥2,800,000)
Keywordscancer / gene / methvlation / HOX / RCC / REFERENCES / RCC
Research Abstract

Epigenetic alterations like DNA methylation and the resulting inactivation of cancer-related genes often contribute to the development of various cancers. To identify the genes that are silenced by aberrant methylation in renal cell carcinoma (RCC), we subjected RCC lines to methylated CpG island/representational difference analysis (MCA/RDA). Subsequent combined bisulfite restriction analysis (COBRA) and bisulfite sequencing analysis of identified CpG islands in primary RCC cases revealed that the human homeo-box gene B13 (HOXB13) gene was methylated in a tumor-specific manner. The methylation frequencies of HOXB13 in primary RCC samples and lines were 30 and 73%, respectively. The methylation status of HOXB13 correlated with the loss of its expression both in RCC lines and primary tumors, and methyltransferase inhibitor (5-aza-dC) treatment induced the recovery of its expression. Exogenous expression of HOXB13 in RCC cells that lacked endogenous HOXB13 expression suppressed cell proliferation and induced apoptosis. Furthermore, HOXB13 methylation correlated positively with tumor grade and microvessel invasion. These results suggest that HOXB13 is a novel tumor suppressor gene in RCC and that its inactivation may play an important role in both RCC tumorigenesis and progression. As HOXB13 is methylated specifically in RCC but not methylated in normal kidney tissues, the methylation of HOXB13 in clinical samples may serve as a valuable diagnostic biomarker for the detection of RCC.

Report

(3 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • Research Products

    (18 results)

All 2007 2006 2005 2004 2003 Other

All Journal Article (17 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Promoter Hyperinethylation of the Bone Morphogenetic Protein-6 Gene in Malignant Lymphoma2007

    • Author(s)
      Masanori Daibata, Yuiko Nemoto, Kentaro Bandobashi, Norihiro Kotani, Mutsumi Tsuchiya, Heiwa Okuda, Tetsuya Takakuwa, Shousuke Imai, Taro Shuin, Hirokuni Taguchi
    • Journal Title

      Clinical Cancer Research 13(12)

      Pages: 3528-35

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Epigenetic inactivation of the candidate tumor suppressor gene HOXB13in human renal cell carcinoma2006

    • Author(s)
      Heiwa Okuda, Minoru Toyota, Waka Ishida, Mutsuo Furihata, Mutsumi Tsuchiya, Masayuki Kamada, Takashi Tokino, Taro Shuin
    • Journal Title

      Oncogene 25

      Pages: 1733-1742

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Emergency Pancreatoduodenectomy for Pancreatic Metastasis from Renal Cell Carcinoma in a Patient with von Hippel-Lindau Disease : A Case Report2006

    • Author(s)
      Hiromichi Maeda, Takehiro Okabayashi, Michiya Kobayashi, Keijiro Araki, Takuhiro Kosaki, Isao Nishimori, Saburo Onishi, Satoshi Ito, Yasuhiro Ogawa, Heiwa Okuda, Taro Shuin
    • Journal Title

      Digestive Diseases and Sciences 51(8)

      Pages: 1383-1387

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Von Hippel-Lindau Disease : Molecular pathological basis, clinical criteria, genetic testing, clinical features of tumors and treatment2006

    • Author(s)
      Taro Shuin, Ichiro Yamasaki, Kenji Tamura, Heiwa Okuda, Mutsuo Furihata, Shingo Ashida
    • Journal Title

      Japanese Journal of Clinical Oncology 36(6)

      Pages: 337-343

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] The Von Hippel Lindau tumor suppressor protein interaction with Protein Kinase C δ2006

    • Author(s)
      Xavier Iturrioz
    • Journal Title

      Biochemical Journal 397(1)

      Pages: 109-120

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Emergency Pancreatoduodenectomy for Pancreatic Metastasis from Renal Cell Carcinoma in a Patient with von Hippel-Lindau Disease : A Case Report2006

    • Author(s)
      Hiromichi Maeda
    • Journal Title

      Digestive Diseases and Sciences 51(8)

      Pages: 1383-1387

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Von Hippel-Lindau Disease : Molecular pathological basis, clinical criteria, genetic testing, clinical features of tumors and treatment2006

    • Author(s)
      Taro Shuin
    • Journal Title

      Japanese Journal of Clinical Oncology 36(6)

      Pages: 337-343

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Epigenetic inactivation of the candidate tumor suppressor gene HOXB13 in human renal cell carcinoma2006

    • Author(s)
      Heiwa Okuda
    • Journal Title

      Oncogene 25

      Pages: 1733-1742

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Renal cell carcinoma- and pheochromocytoma-specific altered gene expression profiles in VHL mutant clones2005

    • Author(s)
      Mutsumi I.Tsuchiya
    • Journal Title

      Oncology Reports 13

      Pages: 1033-1041

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Renal cell carcinoma-and pheochromocytoma-specific altered gene expression profiles in VHL mutant clones2005

    • Author(s)
      Mutsumi I. Tsuchiya, Heiwa Okuda, Yasuyuki Takaki, Masaya Baba, Syu-ichi Hirai, Shigeo Ohno, Taro Shuin
    • Journal Title

      Oncology reports 13

      Pages: 1033-1041

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Renal cell carcinoma- and pheochromocytoma-specific altered gene expression profiles in VHL mutant clones2005

    • Author(s)
      Mutsumi I.Tsuchiya
    • Journal Title

      Oncology reports 13

      Pages: 1033-1041

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Hypermethylation of the RASSFIA tumor suppressor gene in Japanese clear cell renal cell carcinoma2004

    • Author(s)
      Kenji Tokinaga
    • Journal Title

      Oncology Reports 12

      Pages: 805-810

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Recent advances in ideas on the molecular pathology and clinical aspects of Von Hippel-Lindau disease2004

    • Author(s)
      Taro Shuin
    • Journal Title

      International Journal of Clinical Oncology 9

      Pages: 283-287

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Downregulation of CAP43 gene by von HipPe1-Lindau tumor suppressor protein in human renal cancer cells2003

    • Author(s)
      Katsuaki Masuda
    • Journal Title

      International Journal of Cancer 105

      Pages: 803-810

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Molecular detection of von Hippel-Lindau gene mutations in urine and lymph node samples in patients with renal cell carcinoma2003

    • Author(s)
      Shingo Ashida
    • Journal Title

      Journal of Urology 169

      Pages: 2089-2093

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Von Hippel-Lindau(VHL)病癌抑制遺伝子異常と腎臓癌発症について2003

    • Author(s)
      執印 太郎
    • Journal Title

      細胞 35

      Pages: 6-10

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Promoter Hypermethylation of the Bone Morphogenetic Protein-6 Gene in Malignant Lymphoma

    • Author(s)
      Masanori Daibata
    • Journal Title

      Clinical Cancer Research (in press)

    • Related Report
      2006 Annual Research Report
  • [Patent(Industrial Property Rights)] HOXB13遺伝子のメチル化を指標とする腎細胞癌を含む悪性腫瘍の判定方法2006

    • Inventor(s)
      奥田 平和, 執印 太郎, 他
    • Industrial Property Rights Holder
      国立大学法人高知大学 北海道
    • Industrial Property Number
      2006-099703
    • Filing Date
      2006-03-31
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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