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Symbiotic adaptation to hadal environment -Metabolic functions of intracellular symbions from the hadal thyasirid clam Marithyas hadalis-

Research Project

Project/Area Number 17613010
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 極限環境生物学
Research InstitutionJapan Agency for Marine-Earth Science and Technology

Principal Investigator

FUJIWARA Yoshihiro  Japan Agency for Marine-Earth Science and Technology, Japan Agency for Marine-Earth Science and Technology, Extremobiosphere Research Center, Sub Leader (20344294)

Project Period (FY) 2005 – 2007
Project Status Completed (Fiscal Year 2007)
Budget Amount *help
¥3,610,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥210,000)
Fiscal Year 2007: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2006: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2005: ¥1,700,000 (Direct Cost: ¥1,700,000)
KeywordsMaorithyas hadalis / Symbiosis / Chemosynthesis / Thioautotroph / Hadal zone / SoxB gene / Dual symbiosis / Fluorescence in situ hybridization / 化学合成生態系 / 機能遺伝子 / SoxB / 還元環境 / 海洋生態 / 共焦点顕微鏡 / 共生 / 遺伝子 / 細菌
Research Abstract

The thyasrid clam Maorithyas hadalis is a conspicuous species in seep environments at depths of 7, 200-7,400 meters in the Japan Trench. Two distinct phylotypes of endosymbiotic bacteria were shown and spatial partitioning between the phylotypes was observed within the gill tissues.
The purpose of this study was to clarify the metabolic functions of the symbionts of M. hadalis and to understand the adaptation mechanism of the thyasirid clam to its hadal reducing environment. In 2005, detection of genes regarding sulfur oxidation was conducted from M. hadalis gills. The specific primers for PCR amplification of SoxB gene of symbionts from the vesicomyid clam Calyptogena okutanii were designed because of the similarity of 16S ribosomal RNA gene sequences of between the M. hadalis and C. okutanii symbionts. In 2007, SoxB gene was successfully amplified from the total extracted DNA of M. hadalis gills using the specific primers. Therefore, the sulfur oxidizing capability of one of the symbionts was supported by not only phylogeny but also metabolism.
For understanding the microdistribution of the SoxB gene in the host tissue, fluorescence in situ hybridization experiments were conducted in 2006. To determine the experimental conditions, the whale-fall mussel Adipicola pacifica was applied because flesh individuals of the mussel were easily available from our aquaria. The optimum conditions were set for fixation time and fixative. Flesh specimens were required for FISH experiments but there was no chance to collect new samples because the ROV Kaiko, which was the only ROV to reach the M. hadalis habitat, had been lost. Developments of new deep-diving ROV can be dissolve this problem.
This study showed the metabolic function regarding sulfur oxidation in the M. hadalis symbionts. It is important to recognize the wide distribution range of chemosynthetic symbioses between invertebrates and bacteria for understanding of their biogeography and evolution.

Report

(4 results)
  • 2007 Annual Research Report   Final Research Report Summary
  • 2006 Annual Research Report
  • 2005 Annual Research Report
  • Research Products

    (30 results)

All 2008 2007 2006 2005

All Journal Article (20 results) (of which Peer Reviewed: 9 results) Presentation (10 results)

  • [Journal Article] Molecular identification of the ichthyosporean protist Pseudoperkinsus tapetis from the mytilid mussel Adipicola pacifica associated with submerged whale carcasses in Japan2008

    • Author(s)
      Kiyotaka Takishita
    • Journal Title

      Marine Biotechnology 10

      Pages: 13-18

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Neptunomonas japonica sp.nov.,an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima,Japan2008

    • Author(s)
      Masayuki Miyazaki
    • Journal Title

      IJSEM 58

      Pages: 866-871

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Molecular identification of the ichthyosporean protist Pseudoperkinsus tapetis from the mytilid mussel Adipicola pacifica associated with submerged whale carcasses in Japan2008

    • Author(s)
      Takishita, K.
    • Journal Title

      Marine Biotechnology 10

      Pages: 13-18

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Neptunomonas japonica sp. nov., an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan2008

    • Author(s)
      Miyazaki, M.
    • Journal Title

      IJSEM 68

      Pages: 866-871

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Molecular identification of the ichthyosporean protist Pseudoperkinsus tapetis from the mytilid mussel Adipicola pacifica associated with submerged whale carcasses in Japan2008

    • Author(s)
      Takishita, K
    • Journal Title

      Marine Biotechnology 10

      Pages: 13-18

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neptunomonas japonica sp.nov.,an Osedax japonicus symbiont-like bacterium isolated from sediment adjacent to sperm whale carcasses off Kagoshima,Japan2008

    • Author(s)
      Miyazaki
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology 58

      Pages: 866-871

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-year investigations into sperm whale-fall ecosystems in Japan.2007

    • Author(s)
      Yoshihiro Fujiwara
    • Journal Title

      Marine Ecology 28

      Pages: 219-232

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam,Calyptogena okutanii2007

    • Author(s)
      Hirokazu Kuwahara
    • Journal Title

      Current Biology 17

      Pages: 881-886

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Three-year investigations into sperm whale-fall ecosystems in Japan.2007

    • Author(s)
      Fujiwara, Y.
    • Journal Title

      Marine Ecology 28

      Pages: 219-232

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii2007

    • Author(s)
      Kuwahara, H.
    • Journal Title

      Current Biology 17

      Pages: 881-886

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii2007

    • Author(s)
      Kuwahara, H
    • Journal Title

      Current Biology 17

      Pages: 881-886

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-year investigation into sperm whala-fall ecosystems in Japan2007

    • Author(s)
      fujiwara et al.
    • Journal Title

      Marine Ecology 28

      Pages: 219-232

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences2006

    • Author(s)
      Hiromi Iwasaki
    • Journal Title

      Marine Biology 149

      Pages: 1111-1122

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences2006

    • Author(s)
      Iwasaki, H.
    • Journal Title

      Marine Biology 149

      Pages: 1111-1122

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences2006

    • Author(s)
      Iwasaki H, Kyuno A, Shintaku M, fujita Y, Fujiwara Y, Fujikura K, Hashimoto J, Martins LD, Gebruk A, Miyazaki Jl
    • Journal Title

      Marine Biology 149

      Pages: 1111-1122

    • Related Report
      2006 Annual Research Report
  • [Journal Article] 深海底の化学合成共生システム2005

    • Author(s)
      藤原義弘
    • Journal Title

      生物工学 83巻10号

      Pages: 466-468

    • NAID

      110002954146

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary 2005 Annual Research Report
  • [Journal Article] Four protobranch bivalves collected by the ROV Kaiko from hadal depths in the Japan Trench2005

    • Author(s)
      Takashi Okutani
    • Journal Title

      Venus 63

      Pages: 87-94

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Four protobranch bivalves collected by the ROV Kaiko from hadal depths in the Japan Trench2005

    • Author(s)
      Okutani, T.
    • Journal Title

      Venus 63

      Pages: 87-94

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Journal Article] Four protobranch bivalves collected by the ROV Kaiko from hadal depths in the Japan Trench2005

    • Author(s)
      Okutani, Fujiwara
    • Journal Title

      VENUS 63

      Pages: 87-94

    • NAID

      110004856831

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 鯨骨生物群集で発見された新種ナメクジウオ2005

    • Author(s)
      窪川かおる, 藤原義弘
    • Journal Title

      うみうし通信 49

      Pages: 8-9

    • Related Report
      2005 Annual Research Report
  • [Presentation] 化学合成共生システムの進化における生物起源化学合成環境(Biogenic Chemosynthetic Environment)の重要性2008

    • Author(s)
      藤原義弘
    • Organizer
      ブルーアース'08
    • Place of Presentation
      横浜
    • Year and Date
      2008-03-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] The significance of biogenic chemosynthetic environments in evolution of chemosynthetic symbiosis2008

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      Blue Earth '08
    • Place of Presentation
      Yokohama
    • Year and Date
      2008-03-14
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Symbioses at whale falls2007

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      1st EuroDEEP Workshop
    • Place of Presentation
      タオルミナ(イタリア)
    • Year and Date
      2007-11-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Annual Research Report 2007 Final Research Report Summary
  • [Presentation] Symbioses at whale falls2007

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      1st EuroDEEP Workshop
    • Place of Presentation
      Taormina, Italy
    • Year and Date
      2007-11-27
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 鯨骨を用いた実験的生物地理学2007

    • Author(s)
      藤原義弘
    • Organizer
      ブルーアース'07
    • Place of Presentation
      横浜
    • Year and Date
      2007-03-09
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Experimental biogeography using whale falls2007

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      Blue Earth '07
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-03-09
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Whale-fall ecosystems and associated symbioses around Japan2007

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      Diwood Workshop
    • Place of Presentation
      グアデロープ(フランス)
    • Year and Date
      2007-02-19
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Whale-fall ecosystems and associated symbioses around Japan2007

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      Diwood Workshop
    • Place of Presentation
      Guadeloupe, France
    • Year and Date
      2007-02-19
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] 鹿児島県野間岬沖・鯨骨生物群集調査〜地理的ステッピング・ストーンから進化的ステッピング・ストーンへ2006

    • Author(s)
      藤原義弘
    • Organizer
      ブルーアース'06
    • Place of Presentation
      横浜
    • Year and Date
      2006-02-23
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2007 Final Research Report Summary
  • [Presentation] Shallow-water whale-fall ecosystems in Japan - An evolutionary stepping stone for chemosynthetic symbioses2006

    • Author(s)
      Yoshihiro FUJIWARA
    • Organizer
      Blue Earth '06
    • Place of Presentation
      Yokohama
    • Year and Date
      2006-02-23
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2007 Final Research Report Summary

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Published: 2005-04-01   Modified: 2016-04-21  

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