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Science of molecular function by interlocking multiple functional units

Research Project

Project/Area Number 17H01184
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionOsaka University

Principal Investigator

Mizutani Yasuhisa  大阪大学, 理学研究科, 教授 (60270469)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥44,850,000 (Direct Cost: ¥34,500,000、Indirect Cost: ¥10,350,000)
Fiscal Year 2019: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Fiscal Year 2018: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Fiscal Year 2017: ¥23,270,000 (Direct Cost: ¥17,900,000、Indirect Cost: ¥5,370,000)
Keywordsアロステリー / 振動分光学 / ラマン分光法 / タンパク質ダイナミクス
Outline of Final Research Achievements

For PAS and rhodopsin proteins, we observed the structural changes taking place at multiple functional sites in the process from the triggering change to the key step of biological function, and clarified the linkage between the multiple functional sites by using time-resolved resonance Raman spectroscopy. We also quantitatively examined the correlations between the clarified coupled conformational changes and the functional activity of the proteins. The observed correlations identified which conformational changes are key to the protein functions. Furthermore, based on the identification of key structural changes, the creation of chimeric proteins with novel functions has elucidated the interlocking mechanisms that produce molecular functions.

Academic Significance and Societal Importance of the Research Achievements

化学の進展によって、化学者はある機能を持った分子を設計し、それを実際に合成することができるようになった。しかし、複数の機能単位を組み合わせ、互いに連動する、より高度な機能分子を創ることはいまだに困難である。それは合成の技術的な難しさのためではなく、連動させる原理がわからないためであり、原理がわからなければ設計のしようがないためである。タンパク質は高度な連動性機構を持っており、本研究で得られた成果は連動性をもった機能分子を設計する重要な知見を与える。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (48 results)

All 2020 2019 2018 2017 Other

All Journal Article (12 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 12 results,  Open Access: 3 results) Presentation (35 results) (of which Int'l Joint Research: 15 results,  Invited: 13 results) Remarks (1 results)

  • [Journal Article] Allosteric Communication with the Retinal Chromophore upon Ion Binding in a Light-Driven Sodium Ion-Pumping Rhodopsin.2020

    • Author(s)
      A. Otomo, M. Mizuno, K. Inoue, H. Kandori, Y. Mizutani
    • Journal Title

      Biochemistry

      Volume: 59 (4) Issue: 4 Pages: 520-529

    • DOI

      10.1021/acs.biochem.9b01062

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distortion and a Strong Hydrogen Bond in the Retinal Chromophore Enable Sodium Ion Transport by the Sodium Ion Pump KR22019

    • Author(s)
      Nao Nishimura, Misao Mizuno, Hideki Kandori, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. B

      Volume: 印刷中 Issue: 16 Pages: 3430-3440

    • DOI

      10.1021/acs.jpcb.9b00928

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Soft chromophore featured liquid porphyrins and their utilization toward liquid electret applications2019

    • Author(s)
      Ghosh Avijit、Yoshida Manabu、Suemori Kouji、Isago Hiroaki、Kobayashi Nagao、Mizutani Yasuhisa、Kurashige Yuki、Kawamura Izuru、Nirei Masami、Yamamuro Osamu、Takaya Tomohisa、Iwata Koichi、Saeki Akinori、Nagura Kazuhiko、Ishihara Shinsuke、Nakanishi Takashi
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41467-019-12249-8

    • NAID

      120006898089

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of a bound anion on the structure and dynamics of halorhodopsin from Natronomonas pharaonis2019

    • Author(s)
      M. Mizuno, Y. Shimoo, H. Kandori, Y. Mizutani*
    • Journal Title

      Struct. Dynamics

      Volume: 6(5) Issue: 5 Pages: 54703-54703

    • DOI

      10.1063/1.5125621

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Production of a Light-Gated Proton Channel by Replacing the Retinal Chromophore with Its Synthetic Vinylene Derivative.2018

    • Author(s)
      R. Takayama, A. Kaneko , T. Okitsu, S. P. Tsunoda, K. Shimono , M. Mizuno, K. Kojima, T. Tsukamoto, H. Kandori, Y. Mizutani, A. Wada, Y. Sudo
    • Journal Title

      J Phys Chem Lett

      Volume: 9 Issue: 11 Pages: 2857-2862

    • DOI

      10.1021/acs.jpclett.8b00879

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High thermal stability of oligomeric assemblies of Thermophilic rhodopsin in a lipid environment.2018

    • Author(s)
      Tomomi Shionoya, Misao Mizuno, Takashi Tsukamoto, Kento Ikeda, Hayato Seki, Keiichi Kojima, Mikihiro Shibata, Izuru Kawamura, Yuki Sudo, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. B

      Volume: 122 Issue: 27 Pages: 6945-6953

    • DOI

      10.1021/acs.jpcb.8b04894

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins2018

    • Author(s)
      Otomo Akihiro、Mizuno Misao、Singh Manish、Shihoya Wataru、Inoue Keiichi、Nureki Osamu、B?j? Oded、Kandori Hideki、Mizutani Yasuhisa
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 9 Issue: 22 Pages: 6431-6436

    • DOI

      10.1021/acs.jpclett.8b02741

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Force detection of high-frequency electron paramagnetic resonance spectroscopy of microliter solution sample2018

    • Author(s)
      Tsubasa Okamoto、Hideyuki Takahashi、Eiji Ohmichi、Haruto Ishikawa、Yasuhisa Mizutani、Hitoshi Ohta
    • Journal Title

      Applied Physics Letters

      Volume: 113 Issue: 22 Pages: 223702-223702

    • DOI

      10.1063/1.5055743

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tertiary Dynamics of Human Adult Hemoglobin Fixed in R and T Quaternary Structures2018

    • Author(s)
      Shanyan Chang, Misao Mizuno, Haruto Ishikawa and Yasuhisa Mizutani
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 20 Issue: 5 Pages: 3363-3372

    • DOI

      10.1039/c7cp06287g

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Evolution of a Retinal Chromophore in the Photocycle of Halorhodopsin from Natronobacterium pharaonis2018

    • Author(s)
      Misao Mizuno, Ayumi Nakajima, Hideki Kandori, and Yasuhisa Mizutani
    • Journal Title

      J. Phys. Chem. A

      Volume: 122 Issue: 9 Pages: 2411-2423

    • DOI

      10.1021/acs.jpca.7b12332

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Opn5L1 is a retinal receptor that behaves as a reverse and self-regenerating photoreceptor2018

    • Author(s)
      Sato Keita、Yamashita Takahiro、Ohuchi Hideyo、Takeuchi Atsuko、Gotoh Hitoshi、Ono Katsuhiko、Mizuno Misao、Mizutani Yasuhisa、Tomonari Sayuri、Sakai Kazumi、Imamoto Yasushi、Wada Akimori、Shichida Yoshinori
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 1255-1255

    • DOI

      10.1038/s41467-018-03603-3

    • NAID

      120006535079

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Time-Resolved Resonance Raman Spectroscopy and Application to Studies on Ultrafast Protein Dynamics2017

    • Author(s)
      Mizutani Yasuhisa
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 90 Issue: 12 Pages: 1344-1371

    • DOI

      10.1246/bcsj.20170218

    • NAID

      130006250360

    • ISSN
      0009-2673, 1348-0634
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] 新規光駆動内向きプロトン輸送タンパク質SzRのレチナール発色団構造の特徴2020

    • Author(s)
      塩谷 智巳、Manish Singh、水野 操、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 新規光受容タンパク質ヘリオロドプシンが持つ長寿命光反応中間体の発色団構造の解明2020

    • Author(s)
      潤井泰斗、大友 章裕・水野 操、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ナトリウムイオン輸送タンパク質KR2の発色団が持つ水素結合様式の特異性2020

    • Author(s)
      篠崎 友香、大友 章裕、水野 操、吉住 玲、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Atomic contacts drive ultrafast helix motions in myoglobin2020

    • Author(s)
      Shinya Tahara
    • Organizer
      11th Asian Conference on Ultrafast Phenomena
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 時間分解紫外共鳴ラマン分光法によるタンパク質ダイナミクス観測2020

    • Author(s)
      水野操
    • Organizer
      日本分光学会紫外フロンティア講演会「紫外フロンティア分光研究の最前線」、名古屋大学 東山キャンパス、令和2年1月6日
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 新型光受容タンパク質Heliorhodopsinの発色団構造2019

    • Author(s)
      大友 章裕、水野 操、Manish Singh、志甫谷 渉、井上 圭一、濡木 理、Oded Beja、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第99春季年会
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Presentation] 新奇光受容タンパク質ヘリオロドプシンの超高速ダイナミクス2019

    • Author(s)
      田原 進也、Manish Singh、 倉持 光、志甫谷 渉、井上 圭一、濡木 理、Oded Beja、水谷 泰久、神取 秀樹、田原 太平
    • Organizer
      2019年度日本分光学会年次講演会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Atomic Contacts Drive Structural Changes of Myoglobin2019

    • Author(s)
      Shinya Tahara, Misao Mizuno, and Yasuhisa Mizutani
    • Organizer
      Nineteenth International Conference on Time-Resolved Vibrational Spectroscopy
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Time-resolved UV resonance Raman observation of protein dynamics of a light-driven sodium ion-pumping rhodopsin2019

    • Author(s)
      Akihito Otomo, Misao Mizuno, Keiichi Inoue, Hideki Kandori, and Yasuhisa Mizutani
    • Organizer
      Nineteenth International Conference on Time-Resolved Vibrational Spectroscopy
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ハロロドプシンのタンパク質ダイナミクスにおけるアニオン依存性の要因2019

    • Author(s)
      水野 操、下尾 祐未、神取 秀樹、水谷 泰久
    • Organizer
      第13回分子科学討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ミオグロビンの構造変化を駆動する原子間接触2019

    • Author(s)
      田原 進也、水野 操、水谷 泰久
    • Organizer
      第13回分子科学討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 時間分解紫外共鳴ラマン分光法によるKR2の構造ダイナミクスの観測2019

    • Author(s)
      大友 章裕、水野 操、井上 圭一、神取 秀樹、水谷 泰久
    • Organizer
      第13回分子科学討論会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 時間分解共鳴ラマン分光法でタンパク質の化学反応を観る2019

    • Author(s)
      水野操
    • Organizer
      2019年度日本分光学会年次講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Allosteric dynamics of the oxygen sensor protein FixL2019

    • Author(s)
      Haruto Ishikawa
    • Organizer
      6th Awaji International Workshop on “Electron Spin Science & Technology: Biological and Materials Science Oriented Applications”
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Primary Protein Responses to Chromophore Photoreaction in Photoreceptive Proteins2019

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      The 5th International Conference on Ultrafast Structural Dynamics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Protein Dynamics of a Light-Driven Sodium Ion-Pumping Rhodopsin2019

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 時間分解振動分光法とロドプシン研究2019

    • Author(s)
      水谷泰久
    • Organizer
      ISSPワークショップ「レチナールタンパク質の光機能発現の物理と化学」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Structure and Dynamics of the Retinal Chromophore of Microbial Ion Pumps: A Time-Resolved Resonance Raman Study2019

    • Author(s)
      Misao Mizuno
    • Organizer
      Indo-Japan workshop "Frontiers in Molecular Spectroscopy: From Fundamentals to Applications in Chemistry and Biology"
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] A comparison of the structures in two functional conditions of Krokinobacter rhodopsin 22018

    • Author(s)
      Akihiro Otomo, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 脊椎動物がもつ新規光センサーOpn5L1の不活性状態の発色団構造2018

    • Author(s)
      水野 操、水谷 泰久、佐藤 恵太、大内 淑代、山下 高廣、酒井 佳寿美、今元 泰、七田 芳則、山野 由美子、和田 昭盛
    • Organizer
      第12回分子科学討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光駆動ナトリウムイオンポンプの多量体安定性に影響を与える因子2018

    • Author(s)
      大友 章裕、水野 操、井上 圭一、神取 秀樹、水谷 泰久
    • Organizer
      第12回分子科学討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Chromophore Structure in an Inactive State of a Novel Photosensor Opn5L1 of Vertebrates2018

    • Author(s)
      Misao Mizuno, Yasuhisa Mizutani, Keita Sato, Hideyo Ohuchi, Takahiro Yamashita, Kazumi Sakai, Yasushi Imamoto, Yoshinori Shichida, Yumiko Yamano, Akimori Wada
    • Organizer
      18th International Conference on Retinal Proteins
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effects of Solubilized Conditions on the Oligomerization of KR22018

    • Author(s)
      Akihiro Otomo, Misao Mizuno, Keiichi Inoue, Hideki Kandori, Yasuhisa Mizutani
    • Organizer
      18th International Conference on Retinal Proteins
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] High Thermal Stability of Oligomeric Assembly of Thermophilic Rhodopsin in Lipid Bilayer2018

    • Author(s)
      Tomomi Shionoya, Misao Mizuno, Takashi Tsukamoto, Kento Ikeda, Keiichi Kojima, Mikihiro Shibata, Yuki Sudo, and Yasuhisa Mizutani
    • Organizer
      18th International Conference on Retinal Proteins
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Compactness of Protein Structure Facilitates Vibrational Energy Flow2018

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Light-driven cation pump mechanism of a sodium ion pump derived by its chromophore structure of photointermediates2018

    • Author(s)
      Misao Mizuno
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ナトリウムイオン結合に伴う光駆動型ナトリウムイオンポンプKR2の構造変化観測2018

    • Author(s)
      大友 章裕、水野 操、井上 圭一、神取 秀樹、水谷 泰久
    • Organizer
      日本化学会第97春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 好熱菌由来光駆動プロトンポンプの発色団構造および多量体安定性に膜環境が与える効果2018

    • Author(s)
      塩谷智巳、水野操、塚本卓、須藤雄気、水谷泰久
    • Organizer
      日本化学会第97春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 時間分解共鳴ラマン分光法を研ぐ2018

    • Author(s)
      水谷泰久
    • Organizer
      レーザー学会学術講演会第38回年次大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Subunit-subunit interaction in a light-driven proton pump from a thermophilic bacterium: Effects on hydrogen bond of the chromophore2017

    • Author(s)
      Tomomi Shionoya, Misao Mizuno, Takashi Tsukamoto, Yuki Sudo, and Yasuhisa Mizutani
    • Organizer
      The 6th Asian Spectroscopy Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ナトリウムイオンポンプの発色団構造と光駆動カチオン輸送機構2017

    • Author(s)
      水野 操、神取 秀樹、水谷 泰久
    • Organizer
      第11回分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光駆動型ナトリウムイオン輸送タンパク質KR2のイオンに依存した立体構造の違い2017

    • Author(s)
      大友 章裕、水野 操、井上 圭一、神取 秀樹、水谷 泰久
    • Organizer
      第11回分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 好熱菌由来光駆動プロトンポンプTRのタンパク質環境が発色団構造に及ぼす影響2017

    • Author(s)
      塩谷 智巳、水野 操、塚本 卓、須藤 雄気、水谷 泰久
    • Organizer
      第11回分子科学討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Importance of atomic contacts to propagations in protein: functional compactness2017

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      Telluride Science Research Center Workshop on Protein Dynamics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Time-resolved resonance Raman study on roles of hydrogen bonds in light-driven ion-pumping proteins2017

    • Author(s)
      Yasuhisa Mizutani
    • Organizer
      The 6th Asian Spectroscopy Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks] 大阪大学 大学院理学研究科 化学専攻 生物物理化学研究室

    • URL

      http://www.chem.sci.osaka-u.ac.jp/lab/mizutani/index-jp.html

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report 2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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