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Experimental evolutionary genomics study for genetic mechanisms of rapid adaptive evolution

Research Project

Project/Area Number 17H01445
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionTokyo Metropolitan University

Principal Investigator

Tamura Koichiro  東京都立大学, 理学研究科, 教授 (00254144)

Co-Investigator(Kenkyū-buntansha) 和多田 正義  愛媛大学, 理学部, 研究員 (00210881)
野澤 昌文  東京都立大学, 理学研究科, 准教授 (50623534)
Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥42,120,000 (Direct Cost: ¥32,400,000、Indirect Cost: ¥9,720,000)
Fiscal Year 2020: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Fiscal Year 2019: ¥10,270,000 (Direct Cost: ¥7,900,000、Indirect Cost: ¥2,370,000)
Fiscal Year 2018: ¥14,170,000 (Direct Cost: ¥10,900,000、Indirect Cost: ¥3,270,000)
Fiscal Year 2017: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywords低温耐性 / 低温順化 / 人為選択 / 実験進化 / 既存変異 / 柔らかい選択的一掃 / ショウジョウバエ / 集団遺伝 / ゲノム解析 / 適応進化 / 環境適応 / ゲノム / 進化 / 自然選択
Outline of Final Research Achievements

In the traditional view, organismal evolution occurs by a newly emerged mutant gene taking over the preexisting gene by natural selection. In this case, we hardly explain rapid adaptive evolutions, as considerable time expected. In this research project, using a fruit fly species, Drosophila albomicans, which migrated from tropical Southeast Asia to Japan during the 1980s, we investigated the evolutionary mechanism of the rapid cold adaptation. We used an artificial selection of cold tolerance in experimental populations to examine the genome-wide gene frequency changes by the artificial selection and compare them with those observed in the natural population in Japan. In conclusion, we could explain the evolutionary changes of gene frequencies observed in both experimental and natural populations by the "soft selective sweep from standing genetic variation" model. Furthermore, we identified a genomic region as the target of natural selection.

Academic Significance and Societal Importance of the Research Achievements

伝統的な生物進化のメカニズムは、集団中に生じた突然変異に自然選択が作用して集団中の遺伝子が置き換わり生物の表現型が変化するというもので、その場合、ゲノム中、選択の対象となった遺伝子周辺の多様性が著しく低下する“硬い選択的一掃”が生じる。しかし、このモデルではある程度の進化時間が必要とされ、急進的な適応進化は説明しにくい。そこで近年、既存の遺伝的変異に自然選択が作用する“柔らかい選択的一掃”のモデルが提唱されたが、自然集団のゲノム解析では検出しにくい。本研究の最大の成果は、実験集団を併用することによって柔らかい選択的一掃が検出できることを示したことで、進化生物学上の意義がある。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (18 results)

All 2021 2020 2019 2018 2017 Other

All Presentation (17 results) (of which Int'l Joint Research: 3 results,  Invited: 2 results) Remarks (1 results)

  • [Presentation] Genome evolution for cold adaptation in experimental populations of Drosophila albomicans2021

    • Author(s)
      Kondo T, Ogawa Y, Kimura T, Tanaka K, Nozawa M, Watada M, Tamura K
    • Organizer
      Genome Concept Centennial Conference
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Population Genomic Analysis of Drosophila albomicans from Taiwan and Japan2020

    • Author(s)
      Sultan Lulecioglu, Yoshitaka Ogawa, Koichiro Tamura
    • Organizer
      日本進化学会第22回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Comparative transcriptome analysis to reveal candidate genes for cold tolerance in Drosophila albomicans at different climate regions2020

    • Author(s)
      Shikha Singh, Tomohiko Kimura, Kotoha Isobe, Koichiro Tamura
    • Organizer
      日本進化学会第22回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Evolutionary mechanisms of temperature adaptation through alternative splicing in circadian rhythmic genes2020

    • Author(s)
      Sheetal Agarwal, Koichiro Tamura
    • Organizer
      日本進化学会第22回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] アカショウジョウバエの低温適応の実験進化2020

    • Author(s)
      近藤朋希,小川佳孝,田中健太郎,田村浩一郎
    • Organizer
      日本進化学会第22回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] アカショウジョウバエの温度耐性トレードオフの検証2020

    • Author(s)
      秋山茉子,田村浩一郎
    • Organizer
      日本進化学会第22回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] "Evolve & Resequence" for cold tolerance in Drosophila albomicans2019

    • Author(s)
      近藤朋希,田中健太郎,田村浩一郎
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Whole genome comparisons of Drosophila albomicans populations from Taiwan and Japan2019

    • Author(s)
      Luleciogle S, Ogawa Y, Tamura K
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Transcriptome analysis to reveals candidate genes for cold tolerance in Drosophila albomicans2019

    • Author(s)
      Singh S, Kimura T, Isobe K, Tamura K
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Examining temperature tolerance trade-off in Drosophila albomicans2019

    • Author(s)
      秋山茉子,田村浩一郎
    • Organizer
      日本進化学会第21回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] アカショウジョウバエの低温耐性を明らかにする"Evolve & Resequence"2019

    • Author(s)
      近藤朋希,田中健太郎,田村浩一郎
    • Organizer
      日本遺伝学会第91回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Molecular basis of cold acclimation response for rapid adaptive evolution of cold tolerance in Drosophila albomicans2018

    • Author(s)
      Tamura, Koichiro
    • Organizer
      The 1st AsiaEvo Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Comparative transcriptome analyses for cold acclimation response in Drosophila albomicans2018

    • Author(s)
      Kimura T, SetoY, OgawaY, Nozawa M, Tamura K
    • Organizer
      Annual Meeting of the Society for Molecular Biology and Evolution
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 人為選択実験集団を用いたアカショウジョウバエの低温耐性の研究2018

    • Author(s)
      近藤朋希,田中健太郎,田村浩一郎
    • Organizer
      第20回日本進化学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] アカショウジョウバエにおける低温耐性の人為選択の効果2018

    • Author(s)
      近藤朋希,田中健太郎,田村浩一郎
    • Organizer
      第90回日本遺伝学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 比較トランスクリプトーム解析を用いたアカショウジョウバエの低温耐性の遺伝機構の解明2017

    • Author(s)
      木村友彦,磯部琴葉,田村浩一郎
    • Organizer
      日本遺伝学会89回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] アカショウジョウバエの低温耐性に関する比較トランスクリプトーム解析2017

    • Author(s)
      木村友彦,磯部琴葉,田村浩一郎
    • Organizer
      日本進化学会第19回大会
    • Related Report
      2017 Annual Research Report
  • [Remarks] 田村浩一郎

    • URL

      https://www.biol.se.tmu.ac.jp/member/tamura/ja/

    • Related Report
      2020 Annual Research Report

URL: 

Published: 2017-04-28   Modified: 2022-01-27  

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