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The role of acetylation-dependent nuclear NAD metabolism in damaged chromatin dynamics

Research Project

Project/Area Number 17H01875
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation and chemicals
Research InstitutionKyoto University

Principal Investigator

Ikura Tsuyoshi  京都大学, 生命科学研究科, 准教授 (70335686)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2019: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2018: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
KeywordsTIP60 / NAD代謝 / H2AX / アセチル化 / TIP60ヒストンアセチル化酵素 / ヒストンH2AX / クロマチン / 放射線感受性
Outline of Final Research Achievements

We have previously shown that the acetylation of histone H2AX by TIP60 is required for the ADP ribosylation activity of PARP-1 for H2AX exchange at DNA damage sites. However, it remains unknown how the acetylation of H2AX by TIP60 activates the ADP ribosylation activity of PARP-1. In this time, we identified NAD synthetase 1 (NADS1), which is responsible for de novo NAD production, in the purified H2AX complex. Chromatin immunoprecipitation analysis revealed that the acetylation of H2AX by TIP60 is required for the accumulation of NADS1 at DNA damage sites. When NADS1 mutant, which lacks its enzymatic activity, was overexpressed in only cell nucleus, dynamic binding of PARP-1 to damaged chromatin was reduced. It suggests that the NADS1 contributes to local production of NAD for PARP-1 dynamics at DNA damage sites. The depletion of NADS1 in cells failed to homologous recombination repair. Our results indicate the importance of nuclear NADS1 in damaged chromatin dynamics.

Academic Significance and Societal Importance of the Research Achievements

本課題により細胞核内のde novo NAD産生系がゲノムストレス損傷応答に関与することが明らかになった。これまでNAD産生系は、細胞質にのみ存在すると考えられていたが、今回の発見は、NAD 代謝系とTIP60によるH2AXのアセチル化によるH2AXの交換反応が細胞核内で密接に連携していることを示しており、クロマチン制御に対しての新たな視点を提供でき、学術的に意義深い。また本研究は、エネルギー代謝との関連から将来的には生活習慣病、老化シグナルについてクロマチン制御を介したゲノムストレス応答研究の視点からのアプローチが可能となり、社会的貢献度の高い研究としての発展が期待できる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (32 results)

All 2019 2018 2017

All Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 5 results,  Open Access: 4 results) Presentation (25 results) (of which Int'l Joint Research: 3 results,  Invited: 7 results) Book (1 results)

  • [Journal Article] Epigenetic interplays between DNA demethylation and histone methylation for protecting oncogenesis2019

    • Author(s)
      Furuya Kanji、Ikura Masae、Ikura Tsuyoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 165 Issue: 4 Pages: 297-299

    • DOI

      10.1093/jb/mvy124

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distinct roles of ATM and ATR in the regulation of ARP8 phosphorylation to prevent chromosome translocations2018

    • Author(s)
      Sun, J., Shi, L., Kinomura, A., Fukuto, A., Horikoshi, Y., Oma, Y., Harata, M., Ikura, M., Ikura, T., Kanaar, R., Tashiro, S
    • Journal Title

      elife

      Volume: 7

    • DOI

      10.7554/elife.32222

    • NAID

      120006539566

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome2018

    • Author(s)
      Arimura Yasuhiro、Ikura Masae、Fujita Risa、Noda Mamiko、Kobayashi Wataru、Horikoshi Naoki、Sun Jiying、Shi Lin、Kusakabe Masayuki、Harata Masahiko、Ohkawa Yasuyuki、Tashiro Satoshi、Kimura Hiroshi、Ikura Tsuyoshi、Kurumizaka Hitoshi
    • Journal Title

      Nucleic Acids Research

      Volume: - Pages: 10007-10018

    • DOI

      10.1093/nar/gky661

    • NAID

      120006545208

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] SUMO modification system facilitates the exchange of histone variant H2A.Z-2 at DNA damage sites2017

    • Author(s)
      Fukuto Atsuhiko、Ikura Masae、Ikura Tsuyoshi、Sun Jiying、Horikoshi Yasunori、Shima Hiroki、Igarashi Kazuhiko、Kusakabe Masayuki、Harata Masahiko、Horikoshi Naoki、Kurumizaka Hitoshi、Kiuchi Yoshiaki、Tashiro Satoshi
    • Journal Title

      Nucleus

      Volume: 9 Issue: 1 Pages: 87-94

    • DOI

      10.1080/19491034.2017.1395543

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The CDK-PLK1 axis targets the DNA damage checkpoint sensor protein RAD9 to promote cell proliferation and tolerance to genotoxic stress2017

    • Author(s)
      Wakida Takeshi、Ikura Masae、Kuriya Kenji、Ito Shinji、Shiroiwa Yoshiharu、Habu Toshiyuki、Kawamoto Takuo、Okumura Katsuzumi、Ikura Tsuyoshi、Furuya Kanji
    • Journal Title

      eLife

      Volume: 6 Pages: 1-26

    • DOI

      10.7554/elife.29953

    • NAID

      120006370731

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] エピジェネティック代謝物の地産地消2017

    • Author(s)
      五十嵐和彦、井倉 毅
    • Journal Title

      最新医学

      Volume: 72 Pages: 685-692

    • Related Report
      2017 Annual Research Report
  • [Presentation] ロジスティックモデルの更新:老化研究における新たな視点2019

    • Author(s)
      古谷寛治、井倉正枝、井倉 毅
    • Organizer
      日本遺伝学会第91回大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞の生き残り戦略:ゲノムストレス応答蛋白質間相互作用の揺らぎ2019

    • Author(s)
      井倉 毅、古谷寛治、白木琢磨、井倉正枝
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] “生物らしさ”に視点を置いたストレス応答研究の新たな挑戦2019

    • Author(s)
      井倉 毅
    • Organizer
      筑波大学生存ダイナミクス研究センター
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] オートファジー機構によるがんシグナル経路の調節2019

    • Author(s)
      古谷寛治、井倉正枝、井倉毅
    • Organizer
      日本放射線影響学会第62回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ロジスティックモデルの更新に伴う老化研究の新たな視点2019

    • Author(s)
      高橋優喜, 古谷寛治、井倉正枝、井倉 毅
    • Organizer
      第42回日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] データベース解析から紐解くがん細胞のゲノムDNA損傷ストレス抵抗性獲得戦略2019

    • Author(s)
      古谷寛治、井倉正枝、井倉毅
    • Organizer
      第42回日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ゲノムストレス応答研究における知の創成2018

    • Author(s)
      井倉 毅 古谷 寛治 井倉 正枝
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ATM regulates ARP8 phosphorylation to prevent etoposide-induced chromosomal translocations2018

    • Author(s)
      孫 継英、時 林、木野村 愛子、福戸 敦彦、堀越 保則、尾間 由佳子、原田 昌彦、井倉 正枝、井倉 毅、Roland Kanaar、田代 聡
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] オートファジー機構によるがんシグナル経路の調節2018

    • Author(s)
      古谷 寛治 井倉 正枝 井倉 毅
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ヒストンアセチル化を介した損傷クロマチンダイナミクス2018

    • Author(s)
      井倉 毅 古谷 寛治 井倉 正枝
    • Organizer
      日本放射線影響学会 第61回大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] “生物らしさ“に視点を置いた環境ストレス応答研究の将来展望2018

    • Author(s)
      井倉 毅
    • Organizer
      日本環境変異原学会第47回大会、大会特別講演賞受賞講演 京都大学桂キャンパス 船井哲良記念講堂
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ゲノムストレス応答における機能的タンパク質複合体のゆらぎに着目した 生化学研究の新たな展望2018

    • Author(s)
      井倉 毅
    • Organizer
      第91回日本生化学会大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 機能的蛋白質複合体のゆらぎを支配するヒストン化学修飾の新たな理念2018

    • Author(s)
      井倉 毅
    • Organizer
      第20回生命科学研究科シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Telomeric ssDNA-binding proteins of CST Complex are associated with Nucleotide Excision Repair2018

    • Author(s)
      Tomohiko Hara,Yusuke Shima,Yuzo Watanabe,Masae Ikura,Tsuyoshi Ikura,and Fuyuki ishikawa
    • Organizer
      16th International Student Seminar,Kyoto University
    • Related Report
      2017 Annual Research Report
  • [Presentation] ヒストンH2AXの交換反応を介した損傷クロマチンダイナミクス2017

    • Author(s)
      井倉 毅、古谷寛治、田代聡、井倉正枝
    • Organizer
      新学術領域「クロマチン動構造」第5回班会議
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノム損傷ストレスにおけるTIP60ヒストンアセチル化酵素とポリADP-リボシル化酵素PARP-1の連携機構の役割2017

    • Author(s)
      井倉 正枝、福戸 敦彦、古谷 寛治、井倉 毅
    • Organizer
      日本放射線影響学会 第60回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノム損傷ストレス下での細胞増殖を保障するCDK-PLK1経路によるDNA損傷シグナリングの調節2017

    • Author(s)
      古谷 寛治、井倉 正枝、井倉 毅
    • Organizer
      日本放射線影響学会 第60回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] INO80 chromatin remodeling complex prevents 11q23 chromosomal translocations2017

    • Author(s)
      Jiying SUN, Masahiko HARATA, Aiko KINOMURA, Tsuyoshi IKURA, Satoshi TASHIRO
    • Organizer
      日本放射線影響学会 第60回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] CDK-PLK1 axis targets DNA checkpoint sensor protein RAD9,Promoting tolerance to genotoxic stress and cell proliferation2017

    • Author(s)
      Kanji FURUYA, Masae IKURA, Tsuyoshi IKURA
    • Organizer
      The 33rd International Symposium of Radiation Biology Center ,“Cutting Edge of Radiation and Cancer biology”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CST complex, telomeric ssDNA-binding proteins,is associated with Nucleotide Excision Repair in whole genome2017

    • Author(s)
      Tomohiko HARA, Yusuke SHIMA, Yuzo WATANABE, Masae IKURA, Tsuyoshi IKURA, Fuyuki ISHIKAWA
    • Organizer
      The 33rd International Symposium of Radiation Biology Center ,“Cutting Edge of Radiation and Cancer biology”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ATM regulates phosphorylation of ARP8 to repress the loading of INO80 and RAD51 to chromosome translocation breakpoint hotspots2017

    • Author(s)
      Jiying SUN, Masahiko HARATA, Tsuyoshi IKURA, Roland KANAAR, Satoshi TASHIRO
    • Organizer
      The 33rd International Symposium of Radiation Biology Center “Cutting Edge of Radiation and Cancer biology”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノムストレス応答における機能的蛋白質複合体フラクチュエーション2017

    • Author(s)
      井倉 毅、白木 琢磨、古谷 寛治、井倉 正枝
    • Organizer
      生命科学系学会合同年次大会 ConBio 2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノム損傷ストレス下での細胞増殖を保障する CDK-PLK1経路による DNA損傷シグナリングの調節2017

    • Author(s)
      古谷 寛治、井倉 正枝、井倉 毅
    • Organizer
      生命科学系学会合同年次大会 ConBio 2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 11q23染色体転座形成における INO80クロマチン転換複合体の関与2017

    • Author(s)
      孫 継英、原田 昌彦、木野村 愛子、井倉 毅、田代 聡
    • Organizer
      生命科学系学会合同年次大会 ConBio 2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノム損傷ストレス下での細胞増殖を保障する CDK-PLK1 経路による DNA 損傷シグナリングの調節2017

    • Author(s)
      古谷寛治、井倉正枝、井倉毅
    • Organizer
      第35回 染色体ワークショップ・第16回 核ダイナミクス研究会 合同開催
    • Related Report
      2017 Annual Research Report
  • [Book] 京大発! フロンティア生命科学2018

    • Author(s)
      京都大学大学院生命科学研究科
    • Total Pages
      325
    • Publisher
      講談社
    • ISBN
      9784065038017
    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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