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DNA double strand break repair factors mutated in a new syndrome with microcephaly

Research Project

Project/Area Number 17H01877
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation and chemicals
Research InstitutionNagoya University (2018-2019)
Nagasaki University (2017)

Principal Investigator

NAKAZAWA Yuka  名古屋大学, 環境医学研究所, 助教 (00533902)

Co-Investigator(Kenkyū-buntansha) 岡 泰由  名古屋大学, 環境医学研究所, 講師 (60762383)
荻 朋男  名古屋大学, 環境医学研究所, 教授 (80508317)
Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2019: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2017: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
KeywordsDNA修復 / 小頭症 / コケイン症候群 / RNAポリメラーゼ / 修復
Outline of Final Research Achievements

In this study, we have focused on microcephaly as a commonly observed clinical feature of DNA repair deficiency disorders. We have identified several new pathogenic variants in DNA repair genes from microcephaly cases and tried to elucidate their molecular pathogenesis. We have generated mice with mutations in those newly determined genes; however, we often experienced lack of expected phenotypes. This is partly due to greater tolerance to DNA damages in mice; we decided to cross the animals with other mice with deficiency in different DNA repair processes so that overload DNA damage to elicit a phenotype. From this approach, we found that microcephaly and some types of neurodegeneration diseases can be explained by prolonged arrest of RNA polymerases at DNA damage sites during transcription. DNA damage stalled RNA polymerases are ubiquitinated to facilitate DNA repair; when this process is compromised, various neurodegenerative phenotypes, as shown in Cockayne syndrome, come up.

Academic Significance and Societal Importance of the Research Achievements

DNA 損傷応答・DNA 修復機構の先天的な異常により、ゲノムが不安定化することで発症する様々な遺伝性疾患が知られている。これらの疾患では小頭症を示す症例が多く、鑑別診断が重要である。今回、収集した症例のゲノム解析などから、いくつかのDNA修復機構に新規の疾患原因変異を同定した。モデルマウスの解析から、コケイン症候群などで観察される小頭症と神経変性を説明可能な転写と共役したDNA修復機構の分子メカニズムの詳細が明らかにされた。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (32 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (1 results) Journal Article (13 results) (of which Int'l Joint Research: 9 results,  Peer Reviewed: 13 results,  Open Access: 9 results) Presentation (15 results) (of which Int'l Joint Research: 2 results) Remarks (3 results)

  • [Int'l Joint Research] LUMC(オランダ)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Ubiquitination of DNA Damage-Stalled RNAPII Promotes Transcription-Coupled Repair2020

    • Author(s)
      Nakazawa Y, Hara Y, Oka Y, Komine O, van den Heuvel D, Guo C, Daigaku Y, Isono M, He Y, Shimada M, Kato K, Jia N, Hashimoto S, Kotani Y, Miyoshi Y, Tanaka M, Sobue A, Mitsutake N, Suganami T, Masuda A, Ohno K, Nakada S, Mashimo T, Yamanaka K, Luijsterburg MS, Ogi T
    • Journal Title

      Cell

      Volume: 19 Issue: 6 Pages: 1228-1244

    • DOI

      10.1016/j.cell.2020.02.010

    • NAID

      120006871293

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Biallelic VPS35L pathogenic variants cause 3C/Ritscher-Schinzel-like syndrome through dysfunction of retriever complex.2020

    • Author(s)
      Kato K, Okuno Y, Vasilev FF, Otomo T, Oishi H, Muramatsu H, Kawano Y, Oka Y, Nakazawa Y, Ogi T, Takahashi Y, Saitoh S.
    • Journal Title

      Journal of Medical genetics

      Volume: 57 Issue: 4 Pages: 245-253

    • DOI

      10.1136/jmedgenet-2019-106213

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hailey-Hailey disease with oesophageal involvement due to a previously unreported ATP2C1 mutation.2019

    • Author(s)
      Kono M, Kodera M, Inasaka Y, Hasegawa I, Muro Y, Nakazawa Y, Ogi T, Akiyama M.
    • Journal Title

      European Journal of Dermatology

      Volume: 印刷中

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The JAK/STAT3 and NF-kappa B signaling pathways regulate cancer stem cell properties in anaplastic thyroid cancer cells2019

    • Author(s)
      K. Shiraiwa, M. Mitsutake, Y. Nakazawa, T. Ogi, K. Suzuki, V. Saenko, K. Umezawa, S. Yamashita, K. Tsukamoto
    • Journal Title

      Thyroid

      Volume: in press Issue: 5 Pages: 674-682

    • DOI

      10.1089/thy.2018.0212

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Japanese Case of Galli-Galli Disease due to a Previously Unreported POGLUT1 Mutation2019

    • Author(s)
      Kono M、Sawada M、Nakazawa Y、Ogi T、Muro Y、Akiyama M
    • Journal Title

      Acta Dermato Venereologica

      Volume: 99 Issue: 4 Pages: 458-459

    • DOI

      10.2340/00015555-3119

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional and clinical relevance of novel mutations in a large cohort of patients with Cockayne syndrome.2018

    • Author(s)
      Calmels N, Botta E, Jia N, Fawcett H, Nardo T, Nakazawa Y, Lanzafame M, Moriwaki S, Sugita K, Kubota M, Obringer C, Spitz MA, Stefanini M, Laugel V, Orioli D, Ogi T, Lehmann A.
    • Journal Title

      Journal of Medical Genetics

      Volume: 55 Issue: 5 Pages: 329-343

    • DOI

      10.1136/jmedgenet-2017-104877

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cerebellar ataxia-dominant phenotype in patients with ERCC4 mutations2018

    • Author(s)
      Doi H、Koyano S、Miyatake S、Nakajima S、Nakazawa Y、Kunii M、Tomita-Katsumoto A、Oda K、Yamaguchi Y、Fukai R、Ikeda S、Kato R、Ogata K、Kubota S、Hayashi N、Takahashi K、Tada M、Tanaka K、Nakashima M、Tsurusaki Y et al.
    • Journal Title

      Journal of Human Genetics

      Volume: 63 Issue: 4 Pages: 417-423

    • DOI

      10.1038/s10038-017-0408-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel function of HATs and HDACs in homologous recombination through acetylation of human RAD52 at double-strand break sites2018

    • Author(s)
      Yasuda Takeshi、Kagawa Wataru、Tajima Katsushi
    • Journal Title

      PLOS Genetics

      Volume: 14 Issue: 3 Pages: 1007277-1007277

    • DOI

      10.1371/journal.pgen.1007277

    • NAID

      120006459820

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ALC1/CHD1L, a chromatin-remodeling enzyme, is required for efficient base excision repair.2017

    • Author(s)
      Tsuda M, Cho K, Ooka M, Shimizu N, Watanabe R, Yasui A, Nakazawa Y, Ogi T, Harada H, Agama K, Nakamura J, Asada R, Fujiike H, Sakuma T, Yamamoto T, Murai J, Hiraoka M, Koike K, Pommier Y, Takeda S, Hirota K.
    • Journal Title

      PLos One

      Volume: 12 Issue: 11 Pages: e0188320-e0188320

    • DOI

      10.1371/journal.pone.0188320

    • NAID

      120006800808

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways.2017

    • Author(s)
      Okuda M, Nakazawa Y, Guo C, Ogi T, Nishimura Y.
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 22 Pages: 13043-13055

    • DOI

      10.1093/nar/gkx970

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transplantation of bioengineered rat lungs recellularized with endothelial and adipose-derived stromal cells2017

    • Author(s)
      Doi Ryoichiro, Tsuchiya Tomoshi, Mitsutake Norisato, Nishimura Satoshi, Matsuu-Matsuyama Mutsumi, Nakazawa Yuka, Ogi Tomoo, Akita Sadanori, Yukawa Hiroshi, Baba Yoshinobu, Yamasaki Naoya, Matsumoto Keitaro, Miyazaki Takuro, Kamohara Ryotaro, Hatachi Go, Sengyoku Hideyori et al.
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 1-15

    • DOI

      10.1038/s41598-017-09115-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] PCNA ubiquitylation ensures timely completion of unperturbed DNA replication in fission yeast.2017

    • Author(s)
      Daigaku Y, Etheridge TJ, Nakazawa Y, Nakayama M, Watson AT, Miyabe I, Ogi T, Osborne MA, Carr AM.
    • Journal Title

      PLoS Genetics

      Volume: 13 Issue: 5 Pages: e1006789-e1006789

    • DOI

      10.1371/journal.pgen.1006789

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An XPA gene splicing mutation resulting in trace protein expression in an elderly xeroderma pigmentosum group A patient without neurological abnormalities.2017

    • Author(s)
      Takahashi Y, Endo Y, Kusaka A, Nakamaura S, Nakazawa Y, Ogi T, Uryu M, Tsuji M, Furue M, Moriwaki S.
    • Journal Title

      British Journal of Dermatology

      Volume: 印刷中 Issue: 1 Pages: 253-257

    • DOI

      10.1111/bjd.15051

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 転写共役ヌクレオチド除去修復機構に重要なRNAポリメラーゼユビキチン化部位の同定.2019

    • Author(s)
      中沢由華, 原雄一郎, 岡泰由, 小峯起, Diana van den Heuvel, 郭朝万, 大学保一, 磯野真由, 何予希, 嶋田繭子, 加藤香奈, 賈楠, 橋下悟, 小谷祐子, 三好由夏, 田中都, 祖父江顕, 光武範吏, 菅波孝祥, 増田章男, 大野欽司, 中田慎一郎, 真下知士, 山中宏二, Martijn S. Luijsterburg, 荻朋男.
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ChIP-seqを利用したDNA損傷およびヌクレオチド除去修復のモニタリング.2019

    • Author(s)
      原雄一郎, 中沢由華, 岡泰由, 小峯起, Diana van den Heuvel, 郭朝万, 大学保一, 磯野真由, 何予希, 嶋田繭子, 加藤香奈, 賈楠, 橋下悟, 小谷祐子, 三好由夏, 田中都, 祖父江顕, 光武範吏, 菅波孝祥, 増田章男, 大野欽司, 中田慎一郎, 真下知士, 山中宏二, Martijn S. Luijsterburg, 荻朋男.
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] VPS35Lの両アレルにおける機能喪失型バリアントは 3C/Ritscher-Schinzel 症候群に類似の先天異常症候群の原因となる.2019

    • Author(s)
      加藤耕治, 岡泰由, 村松秀城, Vasilev F, 大友孝信, 大石久史, 河野好彦, 中沢由華, 荻朋男, 高橋義行, 齋藤伸治.
    • Organizer
      日本人類遺伝学会第64回大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 希少未診断疾患におけるゲノム解析およびデータ評価パイプラインの構築.2019

    • Author(s)
      中沢由華, 原雄一郎, 遠山美穂, 岡泰由, 荻朋男.
    • Organizer
      第4回名大医薬系3部局交流シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] Biallelic VPS35L pathogenic variants cause 3C/Ritscher-Schinzel-like syndrome through dysfunction of retriever complex.2019

    • Author(s)
      Kato K, Oka Y, Muramatsu H, Vasilev F, Otomo T, Oishi H, Kawano Y, Nakazawa Y, Ogi T, Takahashi Y, Saitoh S.
    • Organizer
      ASHG 2019 Annual Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Alterations in RNA polymerase IIo ubiquitination cause Cockayne syndrome-like premature aging phenotype in mice due to TC-NER defect.2019

    • Author(s)
      Nakazawa Y.
    • Organizer
      International Symposium on XP and other Nucleotide Excision Repair Disorders
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノム不安定性を示す遺伝性疾患の分子病態.2018

    • Author(s)
      中沢由華.
    • Organizer
      第3回名大医薬系3部局交流シンポジウム~岐阜薬科大学・岐阜大学G-CHAIN・ラクオリア創薬合同シンポジウム~
    • Related Report
      2018 Annual Research Report
  • [Presentation] RNAポリメラーゼのユビキチン化修飾による転写共役ヌクレオチド除去修復の反応制御とコケイン症候群の病態.2018

    • Author(s)
      郭朝万, 賈楠, 岡泰由, 中沢由華, 荻 朋男.
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゲノム不安定性を示す遺伝性疾患群の疾患責任遺伝子変異の探索.2017

    • Author(s)
      中沢由華、千住千佳子、岡泰由、嶋田繭子、宮崎仁美、郭朝万、賈楠、荻朋男.
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] マルチオミクス解析による希少遺伝性疾患発症責任因子の同定.2017

    • Author(s)
      岡泰由、中沢由華、荻朋男.
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Molecular pathogenesis underlying Cockayne syndrome and UV-sensitive syndrome.2017

    • Author(s)
      Jia N, Guo C, Oka Y, Nakazawa Y, Shimada M, Miyazaki H, Ogi T.
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] A Novel Gene Mutation Of Japanese Xeroderma Pigmentosum Complementation Group F Patients.2017

    • Author(s)
      Senju C, Nakazawa Y, Ogi T.
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Very mild CS type-IV cases with mutations in the CSB gene.2017

    • Author(s)
      Jia N, Guo C, Oka Y, Nakazawa Y, Shimada M, Miyazaki H, Ogi T.
    • Organizer
      第24回DNA複製・組換え・修復ワークショップ
    • Related Report
      2017 Annual Research Report
  • [Presentation] Identification of pathogenic mutations in patients with rare diseases using multi-omics analysis.2017

    • Author(s)
      Oka Y, Nakazawa Y, Ogi T.
    • Organizer
      日本プロテオーム学会2017年大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA修復機構欠損性疾患の病態解明研究.2017

    • Author(s)
      中沢由華、賈楠、嶋田繭子、宮崎仁美、千住千佳子、郭朝万、岡泰由、荻朋男.
    • Organizer
      第2回放射線災害・医科学研究拠点カンファランス
    • Related Report
      2017 Annual Research Report
  • [Remarks] 名古屋大学環境医学研究所HP

    • URL

      http://www.riem.nagoya-u.ac.jp/index.html

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Remarks] 名古屋大学環境医学研究所 発生遺伝分野HP

    • URL

      http://www.riem.nagoya-u.ac.jp/4/genetics/index.html

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Remarks] 長崎大学原爆後障害医療研究所HP

    • URL

      http://www-sdc.med.nagasaki-u.ac.jp/index-sjis.html

    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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