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Development of a microdevice for single cell/chromatin analysis to elucidate epigenomic dynamics

Research Project

Project/Area Number 17H02753
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Nano/Microsystems
Research InstitutionThe University of Tokyo

Principal Investigator

Hidhiro Oana  東京大学, 大学院工学系研究科(工学部), 准教授 (20314172)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2019: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2017: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Keywordsマイクロ流体デバイス / 1細胞解析 / エピジェネティクス / 1細胞 / マイクロ・ナノデバイス / バイオテクノロジー
Outline of Final Research Achievements

In this study, we have developed a technique for isolating chromosomes from mammalian single cells under a microscope in a microfluidic device, unfolding them, and stretching them in a gentle flow. By applying this technique to mouse-derived undifferentiated cells (ES cells) and differentiated cells (fibroblasts), we found that undifferentiated cell-derived chromosomes were easier to unfold. In addition, for the purpose of determining chromosome numbers, we worked on visualization of specific DNA sequences on the chromosomes in the microfluidic device using the fluorescence-labeled dCas9 protein as a probe. Depending on the target sequence selected, the visualization was achieved.

Academic Significance and Societal Importance of the Research Achievements

本研究では、個々の細胞から染色体および断片化していないクロマチンファイバーを取り出し、これを試料として1分子レベル生化学実験を行うという手法の開発に取り組み実現した。今後、本手法を更に発展させ、マイクロ流体デバイス内で溶液環境を変化させながらクロマチン折り畳みの動態を調べる事で、エピジェネティクスについての理解が深まり、新たな知見に基づいた再生医療やがん治療法が生まれることが期待される。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (11 results)

All 2019 2018 2017

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (9 results) (of which Int'l Joint Research: 5 results,  Invited: 1 results)

  • [Journal Article] A microfluidic device for isolating intact chromosomes from single mammalian cells and probing their folding stability by controlling solution conditions2018

    • Author(s)
      T. Takahashi, K. O. Okeyo, J. Ueda, K. Yamagata, M. Washizu, H. Oana
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 13684-13684

    • DOI

      10.1038/s41598-018-31975-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleosomes exhibit non-uniform unwrapping along native chromatin fibers with increasing salt concentration as revealed by direct imaging in a microfluidic channel2018

    • Author(s)
      Hiroki Mori, Kennedy Omondi Okeyo, Masao Washizu and Hidehiro Oana
    • Journal Title

      Biotechnology Journal

      Volume: 13 Issue: 1 Pages: 1-8

    • DOI

      10.1002/biot.201700245

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] マイクロ流体デバイスを用いた1細胞由来染色体の番号識別技術の開発2019

    • Author(s)
      村山航,鷲津正夫,小穴英廣
    • Organizer
      化学とマイクロ・ナノシステム学会 第39回研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Isolation, Discrimination and Transportation of Individual Specific Chromosomes From Single Mammalian Cells in a Microfluidic Channel2019

    • Author(s)
      小穴英廣
    • Organizer
      Lab-on-a-Chip & Microfluidics World Congress
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Direct acquisition of individual target chromosomes isolated from single mammalian cells in a microfluidic channel for single cell/chromosome epigenetic analyses2018

    • Author(s)
      Hidehiro Oana, Tomohiro Takahashi, Kennedy O. Okeyo, Hiroshi Ochiai, Masao Washizu
    • Organizer
      SELECTBIO Single Cell Analysis Summit 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Developing a microfluidic device for direct observation-based single cell/chromosome epigenetic analyses2018

    • Author(s)
      小穴英廣
    • Organizer
      Mini-symposium of Single Cell Sequencing, Biosensing and Biomicrofluidics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞・染色体単離技術に基づいた細胞の分化度と染色体構造安定性との相関の解析2017

    • Author(s)
      高橋智博・オケヨ ケネディ・上田潤・鷲津正夫・小穴英廣
    • Organizer
      化学とマイクロ・ナノシステム学会第35回研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] マイクロ流体デバイスを用いた1細胞由来の染色体単離・ソーティング技術の開発2017

    • Author(s)
      八尋 啓・オケヨ ケネディ・鷲津 正夫・小穴 英廣
    • Organizer
      化学とマイクロ・ナノシステム学会第35回研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Direct Observation-based Analysis of Compaction Stability of Individual Chromosomes Isolated from Single Mammalian Cells2017

    • Author(s)
      H. Oana, T. Takahashi, K. O. Okeyo, J. Ueda, M. Washizu
    • Organizer
      21th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Direct Observation of Folding Stability of Individual Chromosomes Isolated From Single Mammalian Cells in a Microfluidic Channel2017

    • Author(s)
      Hidehiro Oana
    • Organizer
      Lab-on-a-Chip & Microfluidics, Point-of-Care Diagnostics & Global Health Asia 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マイクロ流路を用いた細胞の分化度と染色体構造安定性との相関のリアルタイム解析技術開発2017

    • Author(s)
      小穴英廣・高橋智博・オケヨ ケネディ・上田潤・山縣一夫・鷲津正夫
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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