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Development of photochemical genomic DNA manipulation using ultrafast DNA phoro-cross-linking

Research Project

Project/Area Number 17H03085
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bio-related chemistry
Research InstitutionJapan Advanced Institute of Science and Technology

Principal Investigator

FUJIMOTO KENZO  北陸先端科学技術大学院大学, 先端科学技術研究科, 教授 (90293894)

Co-Investigator(Kenkyū-buntansha) 坂本 隆  和歌山大学, システム工学部, 准教授 (80423078)
Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2019: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2018: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Fiscal Year 2017: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
KeywordsDNA光クロスリンク / アンチジーン / 可逆的DNA光架橋 / DNA光操作 / バイオテクノロジー / ゲノム操作 / ダブルストランドインベージョンDNA / 核酸 / 光架橋反応 / アンチジーン法 / ゲノムDNA
Outline of Final Research Achievements

The method of manipulating genomic DNA is useful as a fundamental therapy for genetic diseases. In this study, we demonstrated a photochemical genomic DNA manipulation using ultrafast DNA photo-cross-linking. The photo-cross-linkable probes containing 3-cyanovinylcarbazole and cyanouridine or C3 spacer as inhibitor of photo-cross-linking between probes can photo-cross-link to duplex DNA. In addition, the double stranded DNA photo-cross-linked with probe DNA was inhibited transcription by T7 RNA polymerase and the inhibition of gene expression in cells was confirmed.

Academic Significance and Societal Importance of the Research Achievements

遺伝子疾患の根本的な治療としてゲノムDNA操作法が注目を集めている。これまでの水素結合を介したゲノム配列認識ではなく、超高速光クロスリンクを用いることで共有結合を介したゲノム操作に道が開けた。合理的な核酸化学的なアプローチより、正確で定量的な操作法として遺伝子治療分野に貢献が可能となったのではと考えられる。また実際、試験管レベルではあるが、本手法を用いることで転写抑制にも成功しており、核酸医薬分野の一つの手法として位置付けられ、その社会的意義は大きい。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (130 results)

All 2020 2019 2018 2017

All Journal Article (17 results) (of which Peer Reviewed: 17 results,  Open Access: 1 results) Presentation (106 results) (of which Int'l Joint Research: 14 results) Book (1 results) Patent(Industrial Property Rights) (6 results)

  • [Journal Article] Simultaneous Amino Acid Analysis Based on F-19 NMR Using a Modified OPA-Derivatization Method2020

    • Author(s)
      Takashi Sakamoto, Zhiyong Qiu, Miyu Inagaki, Kenzo Fujimoto
    • Journal Title

      Analytical Chemistry

      Volume: 92 Pages: 1669-1673

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA photo-cross-linking using pyranocarbazole modified oligodeoxynucleotide with D-threoninol linker2019

    • Author(s)
      Kenzo Fujimoto, Tsubasa Yamaguchi, Takahiro Inatsugi, Masahiko Takamura, Isao Ishimaru, Ayako Koto, Shigetaka Nakamura
    • Journal Title

      RSC Advances

      Volume: 9 Issue: 53 Pages: 30693-30697

    • DOI

      10.1039/c9ra06145b

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA Fluorescence In Situ Hybridization using Photo-cross-linkable Beacon Probes Containing Pyranocarbazole in Living E. coli2019

    • Author(s)
      Kenzo Fujimoto, Misaki Hashimoto, Nanami Watanabe, Shigetaka Nakamura
    • Journal Title

      Bioorganic Medicinal Chemistry Letter

      Volume: 29 Issue: 16 Pages: 2173-2177

    • DOI

      10.1016/j.bmcl.2019.06.051

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reversible photo-cross-linking of GCN4 peptide containing 3-cyanovinylcarbazole amino acid to double-stranded DNA2019

    • Author(s)
      Zhiyong Qiu, Shigetaka Nakamura, Kenzo Fujimoto
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 17 Issue: 25 Pages: 6277-6283

    • DOI

      10.1039/c9ob00372j

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Strong inhibitory effects of antisense probes on gene expression through ultrafast RNA photo-crosslinking2019

    • Author(s)
      Kenzo Fujimoto, Hung Yang, Shigetaka Nakamura
    • Journal Title

      Chemistry - An Asian Journal

      Volume: 14 Issue: 11 Pages: 1912-1916

    • DOI

      10.1002/asia.201801917

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disassembly-driven Signal Turn-on Probes for Bimodal Detection of DNA with 19F NMR and Fluorescence2018

    • Author(s)
      Takashi Sakamoto, Takashi Hasegawa, Kenzo Fujimoto
    • Journal Title

      Organic &Biomolecular Chemistry

      Volume: 16 Issue: 39 Pages: 7157-7162

    • DOI

      10.1039/c8ob02218f

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of Photochemical Cytosine to Uracil Transition via Ultrafast Photo-Cross-Linking Using Vinylcarbazole Derivatives in Duplex DNA2018

    • Author(s)
      Siddhant Sethi, Shigetaka Nakamura, Kenzo Fujimoto
    • Journal Title

      Molecules

      Volume: 23 Issue: 4 Pages: 828-937

    • DOI

      10.3390/molecules23040828

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiplexed detection of nucleic acids using 19F NMR chemical shift changes based on DNA photo-cross-linking of 3-vinylcarbazole derivatives2018

    • Author(s)
      Nakamura Shigetaka、Takashima Yasuharu、Fujimoto Kenzo
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 16 Issue: 6 Pages: 891-894

    • DOI

      10.1039/c7ob03008h

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA photocrosslinking using 3-vinylcarbazole derivatives in two-color detection of methylcytosine2018

    • Author(s)
      Shigetaka Nakamura, Ryou Nakajima, Kenzo Fujimoto
    • Journal Title

      Chemistry Letter

      Volume: 47 Issue: 7 Pages: 875-877

    • DOI

      10.1246/cl.180205

    • NAID

      130007402740

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DNA Photo-cross-linking Using Pyranocarbazole and Visible Light2018

    • Author(s)
      Kenzo Fujimoto, Shinobu Sasago, Junichi Mihara, Shigetaka Nakamura
    • Journal Title

      Organic Letter

      Volume: 20 Issue: 10 Pages: 2802-2805

    • DOI

      10.1021/acs.orglett.8b00593

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultra‐acceleration of Photochemical Cytosine Deamination by 5'‐phosphate ODN probe containing 3‐Cyanovinylcarbazole at 5'‐end2018

    • Author(s)
      Siddhant Sethi, Nozomi Honda, Licheng Wan, Shigetaka Nakamura, Kenzo Fujimoto
    • Journal Title

      ChemBioChem

      Volume: 19 Issue: 21 Pages: 2257-2261

    • DOI

      10.1002/cbic.201800384

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phototriggered Sequence-specific DNA Transportation into Liposomes Using Ultrafast DNA Photocrosslinking2017

    • Author(s)
      Shigetaka Nakamura; Nobuharu Uehara; Takashi Hasegawa; Kenzo Fujimoto
    • Journal Title

      Chemistry Letters

      Volume: 46 Issue: 12 Pages: 1839-1841

    • DOI

      10.1246/cl.170835

    • NAID

      130006243197

    • ISSN
      0366-7022, 1348-0715
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Wash-free RNA FISH Using a Photoresponsive Beacon Probe via Photochemical Crosslinking2017

    • Author(s)
      Shigetaka Nakamura; Chinami Kano; Kenzo Fujimoto
    • Journal Title

      Chemistry Letters

      Volume: 46 Issue: 12 Pages: 1711-1713

    • DOI

      10.1246/cl.170738

    • NAID

      130006243134

    • ISSN
      0366-7022, 1348-0715
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A multiplex RNA quantification method to determine the absolute amounts of mRNA without reverse transcription2017

    • Author(s)
      Yokomori Maasa、Gotoh Osamu、Murakami Yasufumi、Fujimoto Kenzo、Suyama Akira
    • Journal Title

      Analytical Biochemistry

      Volume: 539 Pages: 96-103

    • DOI

      10.1016/j.ab.2017.10.006

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Double duplex invasion of DNA induced by ultrafast photo-cross-linking using 3-cyanovinylcarbazole toward for antigene method2017

    • Author(s)
      Shigetaka Nakamura; Hayato Kawabata; Kenzo Fujimoto
    • Journal Title

      Chemical Communications

      Volume: 53 Issue: 54 Pages: 7616-7619

    • DOI

      10.1039/c7cc01746d

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of substitution of photo-cross-linker in photochemical cytosine to uracil transition in DNA2017

    • Author(s)
      Siddhant Sethi; Yasuharu Takashima; Shigetaka Nakamura; Kenzo Fujimoto
    • Journal Title

      Bioorganic Medicinal Chemistry Letters

      Volume: 27 Issue: 16 Pages: 3905-3908

    • DOI

      10.1016/j.bmcl.2017.06.042

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of 19F-NMR chemical shift detection of DNA B-Z equilibrium using 19F-NMR2017

    • Author(s)
      Shigetaka Nakamura; Yang Hui; Chihiro Hirata; Florian Kersaudy; Kenzo Fujimoto
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 15 Issue: 24 Pages: 5109-5111

    • DOI

      10.1039/c7ob00706j

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞内RNA操作に向けた可視光で操作可能な新規RNA光クロスリンカーの開発2020

    • Author(s)
      松永峻彦、三原純一、笹子しのぶ、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光化学的に構築したDNAナノ構造がリポソーム表面に及ぼす影響2020

    • Author(s)
      市川優勝、上原敦晴、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Development of novel photoresponsive artificial nucleic acid capable of photo-cross-linking with pyrimidine bases at different positions2020

    • Author(s)
      RYUKAN, Hideyuki、 ISHIDA, Kenta、 LI, Xue、 NAKAMURA, Shigetaka、 FUJIMOTO, Kenzo
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] アンチジーン法に向けた光誘起型double duplex invasion DNA構造の構築2020

    • Author(s)
      平野歩、前田大輔、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超高速RNA光クロスリンカーを用いた遺伝子発現の光制御2020

    • Author(s)
      石野佳奈子、洪揚竣、三原純一、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光化学的RNA編集に向けたシトシン脱アミノ化反応における反応部位周辺環境の影響解析2020

    • Author(s)
      中野雅元、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 対合塩基認識能を有する新規DNA光クロスリンカー開発2020

    • Author(s)
      石田健太、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 複数の光架橋性オリゴDNAを用いたRNA FISH法の開発2020

    • Author(s)
      渡辺ななみ、橋本実沙季、中村重孝、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Photochemical regulation of DNAzyme activity using reversible DNA photo-cross-linking2020

    • Author(s)
      WATANABE, Yasuha、NAKAMURA, Shigetaka、FUJIMOTO, Kenzo
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ゲノム編集に向けた可逆的なDNA光架橋を用いたDNA鎖中シトシン誘導体の塩基変換2020

    • Author(s)
      中村重孝、Sethi Siddhant、万李成、藤本健造
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 高次構造を有する16sRNA検出に向けた新規光架橋型FISH法2019

    • Author(s)
      渡辺ななみ、橋本実沙季、中村重孝、藤本健造
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 化学的塩基編集法における標的シトシン周辺環境が及ぼす影響2019

    • Author(s)
      中野雅元、siddhant Sethi、本田望、中村重孝、藤本健造
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 可視光域で操作可能な超高速DNA光クロスリンカーの開発2019

    • Author(s)
      松永峻彦、笹子しのぶ、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光駆動型Double duplex invasion DNA構造構築に向けた光架橋抑制分子の検討2019

    • Author(s)
      平野歩、前田大輔、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光照射時のDNA情報を保存可能な光駆動型DNAメモリーの開発2019

    • Author(s)
      ズミラハリリ、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 従来と異なる位置で光架橋可能なDNA光クロスリンカーの合成と評価2019

    • Author(s)
      龍官秀行、石田健太、李雪、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光架橋型アンチセンス核酸を用いたGFP-HeLa細胞におけるGFP遺伝子発現抑制2019

    • Author(s)
      石野佳奈子、Hung Yung、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 標的シトシンの周辺環境が光化学的 C to U 変換に及ぼす影響2019

    • Author(s)
      中野雅元、Siddhant Sethi、本田望、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] シトシン誘導体を用いた光化学的シトシン脱アミノ化反応の評価2019

    • Author(s)
      万李成、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超高速RNA光架橋反応を用いた大腸菌16S RNAを標的としたRNA FISH法の開発2019

    • Author(s)
      渡辺ななみ、橋本実紗季、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 対合塩基認識能を有する新規光架橋型核酸の合成と評価2019

    • Author(s)
      石田健太、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光可逆的DNA光架橋反応を用いたDNAzyme活性の光スイッチング2019

    • Author(s)
      渡部康羽、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 二本鎖DNAに光架橋可能な3-シアノビニルカルバゾールアミノ酸を含む核酸結合性GCN4ペプチドの開発2019

    • Author(s)
      Qiu Zhiyong、中村重孝、藤本健造
    • Organizer
      北陸地区講演会と研究発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 従来とは異なる位置で光架橋可能な新規光応答性人工核酸の開発2019

    • Author(s)
      石田健太、李雪、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 光化学的ピンポイント塩基編集における標的シトシンの周辺塩基の影響2019

    • Author(s)
      中野雅元、Sethi siddhant、本田望、高嶋康晴、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] シトシン誘導体5位の置換基が光化学的RNA編集(C to U)に与える影響2019

    • Author(s)
      Wan Licheng、Siddhant Sethi、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 視光で架橋可能なピラノカルバゾールを用いた大腸菌16S rRNA FISH2019

    • Author(s)
      渡辺ななみ、橋本実沙季、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 可逆的光架橋反応を用いたDNAzyme活性のOFF-ONスイッチング2019

    • Author(s)
      渡部康羽、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 核酸類に光架橋可能な3シアノビニルカルバゾール骨格を有する新規光応答性アミノ酸の開発2019

    • Author(s)
      Qiu Zhiyong、中村重孝、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超高速光架橋反応を用いた部位特異的 RNA 編集(C to U)2019

    • Author(s)
      中村重孝、Siddhant Sethi、本田望、高嶋康晴、藤本健造
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] DNA Photo-cross-linking of GCN4 Peptide Containing L-3-cyanovinylcarbazole Amino Acid to Duplex DNA2019

    • Author(s)
      Qiu Zhiyong、Shigetaka Nakamura、Kenzo Fujimoto
    • Organizer
      The Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photochemical Inhibition of GFP Protein Expression by Ultrafast RNA Photo-cross-linking in GFP-HeLa Cell2019

    • Author(s)
      Yasuha Watanabe、Hung Yang、Shigetaka Nakamura、Kenzo Fujimoto
    • Organizer
      The Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RNA fluorescence In situ hybridization using photo-cross-linkable beacon probes targeted to 16S rRNA in E. coli2019

    • Author(s)
      Shigetaka Nakamura、Misaki Hashimoto、Kenzo Fujimoto
    • Organizer
      The Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of Surrounding Environment of Target Cytosine in Pinpoint RNA Editing Using RNA Photo-cross-linking2019

    • Author(s)
      Kenzo Fujimoto、Sethi siddhant、Nozomi Honda、Shigetaka Nakamura
    • Organizer
      The Commemorative International Symposium of the Japan Society of Nucleic Acids Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 光架橋型アンチセンス核酸を用いたGFP遺伝子発現抑制効果の評価2019

    • Author(s)
      中村重孝、Hong Yung-Chun、三原純一、藤本健造
    • Organizer
      日本核酸医薬学会第5回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 標的シトシン周辺環境が光化学的RNA編集に与える影響2019

    • Author(s)
      石田健太、中野雅元、本田望、Siddhant Sethi、中村重孝、 藤本健造
    • Organizer
      日本核酸医薬学会第5回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 超高速RNA光架橋反応を用いた大腸菌16S rRNAを標的とした生細胞内RNA FISH法の開発2019

    • Author(s)
      渡辺ななみ、橋本実沙季、中村重孝、藤本健造
    • Organizer
      日本核酸医薬学会第5回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 標的シトシン周辺環境が3-cyanovinylcarbazoleを用いた光化学的RNA編集に及ぼす影響2019

    • Author(s)
      中野雅元、Sethi siddhant,本田望、高嶋康晴、中村重孝、藤本健造
    • Organizer
      第21回日本RNA学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 標的シトシン周辺環境が光化学的RNA塩基変換に与える影響2019

    • Author(s)
      石田健太 、Siddhant SETHI 、本田望、中野雅元 、中村重孝 、藤本健造
    • Organizer
      日本ケミカルバイオロジー学会第14回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Development of photo-cross-linkable artificial peptide for DNA2019

    • Author(s)
      Qiu Zhiyong, Nakamura Shigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 可視光応答性人工核酸の開発および生細胞内遺伝子発現制御への応用2019

    • Author(s)
      三原純一、笹子しのぶ、中村重孝、藤本健造
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of DNA photo-cross-linkable probe for photo-triggered double duplex DNA formation2019

    • Author(s)
      Maeda Daisuke, Nakamura Shigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Photo-triggered construction of DNA nanostructure on the surfaces of liposomes by using DNA photo-cross-linking2019

    • Author(s)
      Uehara Nobuharu, Nakamura Sigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of RNA FISH in living cells using RNA photo-cross-linkable beacon probe2019

    • Author(s)
      Hashimoto Misaki, Nakamura Shigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Regulation of enzymatic activity of DNAzyme using DNA photo-cross-linking2019

    • Author(s)
      Watanabe Yasuha, Nakamura Shigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of novel DNA photo-cross-linker with pyranocarbazole via D-threoninol2019

    • Author(s)
      Yamaguchi Tsubasa, Inatsugi Takahiro, Takamura Masahiko, Ishimaru Isao, Koto Ayako, Nakamura Shigetaka, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 従来と異なる位置のピリミジンと架橋する新規DNA光架橋反応2019

    • Author(s)
      石田健太・中村重孝・藤本健造
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Multiplexed detection of nucleic acids using 19F NMR chemical shift based on DNA photo-cross-linking of 3-vinylcarbazole derivatives.2019

    • Author(s)
      Nakamura Shigetaka, Takashima Yasuharu, Fujimoto Kenzo
    • Organizer
      第99回日本化学会春季年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゲノムDNA中のメチルシトシンを標的としたDNA光操作法の開発2018

    • Author(s)
      中村重孝、前田大輔、藤本健造
    • Organizer
      第12回日本エピジェネティクス研究会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゲノム編集に向けた超高速DNA光架橋反応を用いたゲノム操作法の開発2018

    • Author(s)
      前田大輔、笹子しのぶ、中村重孝、藤本健造
    • Organizer
      日本ゲノム編集学会第3回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 超高速光架橋素子を含むオリゴDNAを用いたアンチセンス効果の光制御2018

    • Author(s)
      三原純一、洪揚竣、中村 重孝、藤本健造
    • Organizer
      日本ケミカルバイオロジー学会 第13回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 2 本鎖DNAに対して光架橋可能なGCN4 人工ペプチドの開発2018

    • Author(s)
      Qiu Zhiong、中村重孝、藤本健造
    • Organizer
      核酸医薬学会第4回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] アンチジーン法に向けた超高速光応答性人工核酸プローブによる2本鎖DNA同時光架橋2018

    • Author(s)
      前田大輔、川端勇人、中村重孝、藤本健造
    • Organizer
      核酸医薬学会第4回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 超高速核酸類光架橋反応を利用したC→U変異反応開発2018

    • Author(s)
      中村重孝、Siddhant Sethi、本田望、高嶋康晴、藤本健造
    • Organizer
      核酸医薬学会第4回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ゲノムDNAの光操作に向けて:光をトリガーとしたDouble duplex invasion DNAの構築2018

    • Author(s)
      中村重孝、前田大輔、藤本健造
    • Organizer
      第28回バイオ高分子シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 二本鎖 DNA に対する光架橋を可能とする核酸プローブの開発2018

    • Author(s)
      前田 大輔、川端 勇人、中村 重孝、藤本 健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光照射をトリガーとしたリポソーム内部への配列選択的 DNA 輸送2018

    • Author(s)
      中村重孝、上原敦晴、長谷川貴司、藤本健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] トリフルオロメチル基を有するピリミジン塩基を用いた 19F NMR による B-Z 構造転移解析2018

    • Author(s)
      WANG CHEN、YANG HUI、中村重孝、藤本健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 3-シアノビニルカルバゾール基を有する光応答性アミノ酸の合成2018

    • Author(s)
      QIU Zhiyong、中村重孝、藤本健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] カルバゾール誘導体を光増感剤として用いたチミンダイマーの光修復2018

    • Author(s)
      山口翼、神保亮輔、中村重孝、藤本健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] 超高速RNA光架橋反応を用いた生細胞内アンチセンス効果の光制御2018

    • Author(s)
      三原純一、洪揚竣、中村重孝、藤本健造
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of visible light responsive nucleic acid for application of nucleic acid medicine2018

    • Author(s)
      Junichi Mihara, Shinobu Sasago, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      IKCOC2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of photo-cross-linkable ODN equipped with 3-cyanovinylcarbazole tethered by carbon linker based on click chemistry2018

    • Author(s)
      Kenta Ishida, Li Xue, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photochemical repair of thymidine dimer in DNA using 3-vinylcarbazole derivatives as photosensitizer2018

    • Author(s)
      Tsubasa Yamaguchi, Ryosuke Jinbo, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photo-triggered double duplex invasion DNA using ultrafast photo-cross-linking2018

    • Author(s)
      Shigetaka Nakamura, Daisuke Maeda, Kenzo Fujimoto
    • Organizer
      The 45th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of wash-free RNA FISH using photo-cross-linkable beacon probe containing 3-cyanovinylcarbazole2018

    • Author(s)
      Misaki Hashimoto, Chinami Kano, Shigetaka Nakamura and Kenzo Fujimoto
    • Organizer
      第41回分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 2本鎖DNAに光架橋する人工ペプチドの合成2018

    • Author(s)
      QIU Zhiyong,中村重孝,藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ユニークな末端構造を持つ二本鎖DNAを鋳型としたPCR効率の評価2018

    • Author(s)
      WANG Chen、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] トレオニノール骨格を有する新規DNA・RNAクロスリンカーの開発2018

    • Author(s)
      山口翼, 稲継崇宏, 高村雅彦, 石丸勇雄,向當綾子, 中村重孝, 藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] UFCを用いた細胞内アンチセンス効果の制御2018

    • Author(s)
      三原純一、洪揚竣、中村重孝、藤本建造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光化学的DNAナノ構造構築によるリポソーム膜形態変化の誘起2018

    • Author(s)
      上原敦晴、長谷川貴司、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 可逆的光架橋反応を用いたDNAzyme活性の制御2018

    • Author(s)
      渡部康羽、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光架橋能を有するBeacon型プローブを用いた生細胞内RNA FISH法の開発2018

    • Author(s)
      橋本実沙季、狩野千波、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光をトリガーとしたDouble duplex invasion DNA構造における自己光架橋抑制分子の検討2018

    • Author(s)
      前田大輔、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Click chemistryを用いた新規光架橋性オリゴ核酸の合成2018

    • Author(s)
      石田健太、李雪、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] UFC(超高速光架橋反応)を用いたDNA鎖中メチルシトシンの定量解析2018

    • Author(s)
      中野雅元、中島涼、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光照射をトリガーとした ATP 依存型核酸シグナル放出系の開発2018

    • Author(s)
      渡辺ななみ、松野仁志、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 光化学的シトシン脱アミノ化反応における標的シトシンの周辺塩基の影響2018

    • Author(s)
      万李成、Sethi Siddhant、本田 望、高嶋康晴、中村重孝、藤本健造
    • Organizer
      平成30年度 北陸地区講演会と研究発表会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Detection of 5-methylcytosinevia DNA photo-cross-linking using 3-vinylcarbazole derivatives2018

    • Author(s)
      NAKAJIMA, Ryo; NAKAMURA, Shigetaka; FUJIMOTO, kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of novel DNA photo-cross-linker with visible light2018

    • Author(s)
      SASAGO, Shinobu; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Effect of around the cytosine in photochemical C to U transition using reversible DNA photo-cross-linking in DNA strand2018

    • Author(s)
      HONDA, Nozomi; SETHI, Siddhant; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Study of 3-cyanovinylcarbazole mediated DNA photo-cross-linking by using uracil derivatives2018

    • Author(s)
      YAMAGUCHI, Tsubasa; KAWABATA, Hayato; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of CpG DNA release system with X-ray irradiation2018

    • Author(s)
      MIHARA, Junichi; HURUSAWA, Mirei; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photochemical regulation of DNAzyme activity using reversible DNA photo-cross-linking2018

    • Author(s)
      WATANABE, Yasuha; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photo-triggered DNA transportation to inside of liposome via construction of DNA nanostructure on liposome surface2018

    • Author(s)
      UEHARA, Nobuharu; HASEGAWA, Takashi; NAKAMURA, Sigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photo-triggered double duplex DNA formation by ultrafast DNA photo-cross-linking2018

    • Author(s)
      MAEDA, Daisuke; KAWABATA, Hayato; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 19F NMR analysis of DNA B-Z transition using ODN probe containing trifluoromethylcytidine and trifluoromethylthymidine2018

    • Author(s)
      WANG, Chen; YANG, Hui; HIRATA, Chihiro; KERSAUDY, Florian; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of wash free RNA FISH using photo-cross-linkable beacon probe2018

    • Author(s)
      HASHIMOTO, Misaki; KANO, Chinami; NAKAMURA, Shigetaka; FUJIMOTO, Kenzo
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Development of novel DNA poto-cross-linker for visible light-triggered cross-linking of DNA2017

    • Author(s)
      Shinobu Sasago, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Detection of 5-methylcytosine and cytosine in DNA via 3-vinylcarbazole analogs mediated DNA photo-cross-linking2017

    • Author(s)
      Ryo Nakajima, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effect of surrounding of target cytosine in photochemical cytosine-to-uracil transition with in photo-cross-linked DNA duplex2017

    • Author(s)
      Nozomi Honda, Yasuharu Takashima, Siddhant Sethi, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RNA FISH using ultrafast photo-cross-linkable beacon probe containing 3-caynovinylcabrazole2017

    • Author(s)
      Misaki Hashimoto, Chinami Kano, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Photo-induced double duplex invasion of DNA using ultrafast photo-cross-linking for antigene technology2017

    • Author(s)
      Daisuke Maeda, Hayato Kawabata, Yang Hung, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of DNA B-Z transition by 19F NMR using fluorine labeled ODN probe2017

    • Author(s)
      Shigetaka Nakamura, Hung Yang, Chihiro Hirata, Florian Kersaudy, Kenzo Fujimoto
    • Organizer
      ISNAC2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The effect of 5-substitution in pyrimidine base via DNA photo-cross-linking using 3-cyanovinylcabrazole2017

    • Author(s)
      Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      CBI Annual Meething 2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光刺激によるリポソーム内部へのDNA輸送2017

    • Author(s)
      中村重孝、上原敦晴、長谷川貴司、藤本健造
    • Organizer
      細胞を作る研究会10.0
    • Related Report
      2017 Annual Research Report
  • [Presentation] 可視域で操作可能な新規DNA光架橋性核酸の合成2017

    • Author(s)
      笹子しのぶ、中村重孝、藤本健造
    • Organizer
      第11回バイオ関連シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] ATP濃度依存的な光誘起型DNAシグナル放出機構の開発2017

    • Author(s)
      松野仁志、中村重孝、藤本健造
    • Organizer
      第11回バイオ関連シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] チミンダイマーの光修復を可能とする新規DNA操作法の開発2017

    • Author(s)
      神保亮輔、中村重孝、藤本健造
    • Organizer
      第11回バイオ関連シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] ビニルカルバゾール誘導体による超高速DNA光架橋反応を用いたメチルシトシンの検出2017

    • Author(s)
      中島涼、中村重孝、藤本健造
    • Organizer
      第11回バイオ関連シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA鎖中での光化学的C→U変換に置けるシトシン対合塩基の影響2017

    • Author(s)
      本田望、中村重孝、藤本健造
    • Organizer
      第11回バイオ関連シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Non-enzymatic approach towards cytosine deamination using 3-cyanovinylcarbazole assisted photo-cross-linking2017

    • Author(s)
      Siddhant Sethi, Yasuharu Takashima, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 超高速光架橋性ビーコン型プローブを用いたwash-free RNA FISH法の開発2017

    • Author(s)
      Zhiyong Qiu, 狩野千波、中村重孝、藤本健造
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光架橋能を有するビーコン型ODNプローブを用いたwash-free RNA FISHの開発2017

    • Author(s)
      Zhiyong Qiu, 狩野千波、中村重孝、藤本健造
    • Organizer
      日本医薬学会 第3回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photoinduced double duplex formation mediated by ultrafast DNA photo-cross-linking for antigene method2017

    • Author(s)
      Yang, Hung, Shigetaka Nakamura, Kenzo Fujimoto
    • Organizer
      日本医薬学会 第3回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 超高速光架橋性ビーコン型プローブを用いたRNA FISH法の開発2017

    • Author(s)
      Zhiyong Qiu, 狩野千波、中村重孝、藤本健造
    • Organizer
      日本ケミカルバイオロジー学会 第12回年会
    • Related Report
      2017 Annual Research Report
  • [Book] 光化学的DNA及びRNA操作法の開発 -ゲノムDNAの光操作・RNA光編集に向けて2019

    • Author(s)
      藤本健造
    • Total Pages
      2
    • Publisher
      ニューサイエンス社
    • Related Report
      2019 Annual Research Report
  • [Patent(Industrial Property Rights)] 光応答性ヌクレオチドアナログ2019

    • Inventor(s)
      藤本健造、石田健太
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-140348
    • Filing Date
      2019
    • Related Report
      2019 Annual Research Report
  • [Patent(Industrial Property Rights)] 二本鎖形成によって19Fケミカルシフトの変化を生じさせる方法2019

    • Inventor(s)
      藤本健造
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-019115
    • Filing Date
      2019
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 光応答性ヌクレオチドアナログの製造方法2019

    • Inventor(s)
      藤本健造
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-014890
    • Filing Date
      2019
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 光反応性人工アミノ酸、及び光架橋性人工ポリペプチド2018

    • Inventor(s)
      藤本健造、中村重孝
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-072685
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 薬剤内包リポソームの製造方法2017

    • Inventor(s)
      藤本健造、中村重孝
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-144955
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] 可視光域で光架橋可能な光応答性ヌクレオチドアナログ2017

    • Inventor(s)
      藤本健造、中村重孝
    • Industrial Property Rights Holder
      北陸先端科学技術大学院大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2017-144897
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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