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Molecular mechanism of the unidirectional rotation of the rotor-less V1 rotary motor

Research Project

Project/Area Number 17H03638
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionChiba University

Principal Investigator

Murata Takeshi  千葉大学, 大学院理学研究院, 教授 (80415322)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2019: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2018: ¥7,020,000 (Direct Cost: ¥5,400,000、Indirect Cost: ¥1,620,000)
Fiscal Year 2017: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
KeywordsV-ATPase / 分子モーター / 構造解析
Outline of Final Research Achievements

V-ATPases function as ATP-dependent ion pumps. The hydrophilic V1 portion is known as a rotary motor in which a central axis DF complex rotates inside a hexagonally arranged catalytic A3B3 complex using ATP hydrolysis energy. We previously succeeded in obtaining the crystal structures of the A3B3 complex and the dynamics showing a unidirectional rotation of the complex in the presence of ATP analog by high-speed AFM. In this study, we elucidated the crystal structures and biochemical properties of ADP bound and ATP bound A3B3 complex. Based on these and previous findings, we propose a molecular mechanism of the unidirectional rotation of the rotor-less V1 rotary motor.

Academic Significance and Societal Importance of the Research Achievements

本研究よるA3B3複合体の分子メカニズムの解明は、V1モーターの協同的な反応機構の根本的な理解に重要であるばかりでなく、その他の分子モーターがもつ分子機構の一般原理の理解にも重要であると考えられる。また、V-ATPaseが関連するガン転移や骨粗鬆症などの重要な疾病原因の理解やその治療法についても進展することが期待される。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (25 results)

All 2019 2018 2017 Other

All Int'l Joint Research (4 results) Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 4 results) Presentation (17 results) (of which Int'l Joint Research: 4 results,  Invited: 8 results)

  • [Int'l Joint Research] Arizona State University/University of Illinois(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University de Lorraine(フランス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Arizona State University/University of Illinois(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University de Lorraine(フランス)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase2019

    • Author(s)
      Iida Tatsuya、Minagawa Yoshihiro、Ueno Hiroshi、Kawai Fumihiro、Murata Takeshi、Iino Ryota
    • Journal Title

      Journal of Biological Chemistry

      Volume: 294 Issue: 45 Pages: 17017-17030

    • DOI

      10.1074/jbc.ra119.008947

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Metastable asymmetrical structure of shaftless V1 motor2019

    • Author(s)
      S. Maruyama, K. Suzuki, M. Imamura, H. Sasaki, H. Matsunami, K. Mizutani, Y. Saito, F. L. Imai, Y. Ishizuka-Katsura, T. Kimura-Someya, M. Shirouzu, T. Uchihashi, T. Ando, I. Yamato, T. Murata
    • Journal Title

      Sci. Adv.

      Volume: 5 Issue: 1

    • DOI

      10.1126/sciadv.aau8149

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rotational Mechanism Model of the Bacterial V1 Motor Based on Structural and Computational Analyses2019

    • Author(s)
      Singharoy A, Chipot C, Ekimoto T, Suzuki K, Ikeguchi M, Yamato I, Murata T.
    • Journal Title

      Front Physiol.

      Volume: 10 Pages: 1-12

    • DOI

      10.3389/fphys.2019.00046

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopy2018

    • Author(s)
      Tsunoda Jun、Song Chihong、Imai Fabiana Lica、Takagi Junichi、Ueno Hiroshi、Murata Takeshi、Iino Ryota、Murata Kazuyoshi
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 15632-15632

    • DOI

      10.1038/s41598-018-33977-9

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] バンコマイシン耐性腸球菌に存在するV-ATPaseを分子標的とした新規抗菌薬の開発2019

    • Author(s)
      清水 康輝、薬師寺 リカ ファビアナ、森山 克彦、後藤 義幸、村田 武士
    • Organizer
      第92回日本細菌学会総会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Na+-transporting V-ATPase is a new target for drug development against Vancomycin-resistant Enterococcus (VRE)2019

    • Author(s)
      Kouki Shimizu, Fabiana Lica Yakushiji, Katsuhiko Moriyama, Yoshiyuki Goto, Takeshi Murata
    • Organizer
      Gordon Research Conference on Bioenergetics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of new antibacterial drug targeting V-ATPase in Vancomycin-resistant Enterococcus2019

    • Author(s)
      Takeshi Murata
    • Organizer
      Gordon Research Conference on Bioenergetics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The combination of high-speed atomic force microscopy and X-ray crystallography reveals rotary catalysis of a shaftless V1 motor2019

    • Author(s)
      Shintaro Maruyama, Motonori Imamura, Takayuki Uchihashi, Kazuya Nakamoto, Mizutani Kenji, Lica Fabiana Imai, Kano Suzuki, Yoshiko Ishizuka-Katsura, Tomomi Someya-Kimura, Mikako Shirouzu, Ichiro Yamato, Toshio Ando, Takeshi Murata
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Chemo-mechanical coupling scheme of rotary molecular motor Enterococcus hirae V1-ATPase revealed by single-molecule analysis2019

    • Author(s)
      Tatsuya Iida, Yoshihiro Minagawa, Hiroshi Ueno, Fumihiro Kawai, Takeshi Murata, Ryota Iino
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] The off-axis rotor of Enterococcus hirae V-type ATPase by Volta phase contrast cryo-EM2019

    • Author(s)
      Burton-Smith Raymond. N, Tsunoda Jun, Yamamori Yu, Miyazaki Naoyuki, Imai Fabiana L., Song Chihong, Tomii Kentaro, Iwasaki Kenji, Takagi Junichi, Ueno Hiroshi, Murata Takeshi, Iino Ryota, Murata Kazuyoshi
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 回転分子モータータンパク質によるプロトン輸送メカニズム2019

    • Author(s)
      村田武士
    • Organizer
      第92回日本生化学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 薬剤耐性腸球菌V-ATPaseを標的とした新規抗菌薬の開発2019

    • Author(s)
      清水 康輝、森山 克彦、後藤 義幸、村田 武士
    • Organizer
      第45回生体エネルギー研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] New methodologies for human membrane protein crystallography2019

    • Author(s)
      Takeshi Murata
    • Organizer
      Gordon Research Conference on IGF and Insulin System in Physiology and Disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 理論計算を用いた膜蛋白質の耐熱化法の開発2018

    • Author(s)
      村田武士
    • Organizer
      第4回蛋白質工学研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] N 末端側βバレルドメインのクラウン構造が非対称性を生み、恊動性を付与する2018

    • Author(s)
      丸山 慎太郎、鈴木 花野、今村 元紀、佐々木 輝、松波 秀行、水谷 健二、齋藤 靖子、今井 ファビアナ・リカ、石塚(桂)芳子、 染谷(木村)友美、白水 美香子、内橋 貴之、安藤 敏夫、山登 一郎、村田 武士
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Immobilization of conformational state of E.hirae V-ATPase complex using PA tag system for structural analysis2018

    • Author(s)
      Fabiana L Yakushiji, Jun Tsunoda, Chihong Song, Hiroshi Ueno, Ryota Iino, Satoshi Ogasawara, Junichi Takagi, Kazuyoshi Murata, Takeshi Murata
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] N-terminal b-barrel domain constraint gives rise the asymmetrical motor structure of V1-ATPase to provide cooperativity2017

    • Author(s)
      Takeshi Murata
    • Organizer
      Gordon Research Conference in Molecular and Cellular Bioenergetics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 回転分子モーターの酵素反応機構の完全理解に向けて2017

    • Author(s)
      村田武士
    • Organizer
      第一回量子生命科学研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 膜タンパク質の構造解析のボトルネックと解決策2017

    • Author(s)
      村田武士
    • Organizer
      第12回トランスポーター研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular mechanism of the structural formation of V1 rotary motor2017

    • Author(s)
      Takeshi Murata
    • Organizer
      第53回日本生物物理学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] X線を用いた膜タンパク質の結晶構造解析の展望2017

    • Author(s)
      村田武士
    • Organizer
      KEK物質構造科学研究所 設立20周年記念シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited

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Published: 2017-04-28   Modified: 2021-02-19  

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