• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural Biology of Molecular Mechanism of Hydrogenase Maturation Proteins

Research Project

Project/Area Number 17H03642
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Miki Kunio  京都大学, 理学研究科, 名誉教授 (10116105)

Co-Investigator(Kenkyū-buntansha) 藤橋 雅宏  京都大学, 理学研究科, 助教 (10397581)
渡部 聡  東北大学, 多元物質科学研究所, 助教 (50432357)
Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
Fiscal Year 2019: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2018: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2017: ¥10,400,000 (Direct Cost: ¥8,000,000、Indirect Cost: ¥2,400,000)
KeywordsX線結晶解析 / ヒドロゲナーゼ / タンパク質の成熟化 / Hyp成熟化タンパク質 / 構造機能相関 / 構造生物学 / 成熟化タンパク質 / X線結晶解析
Outline of Final Research Achievements

[NiFe] hydrogenases catalyze reversible hydrogen production/consumption. We have elucidated the molecular mechanism of maturation process of [NiFe] hydrogenases where the Ni/Fe cluster, an active center of the enzyme, is incorporated into protein precursors of hydrogenase in vivo. We have already determined crystal structures of six Hyp proteins which catalyze a series of maturation process of [NiFe] hydrogenases. We focused here on the structures of transient complexes including Hyp proteins which are formed during a series of reactions of maturation process. We succeeded in crystal structure determination including the complex between a nickel chaperon HypA and a large subunit precursor of hydrogenase. Consequently, we have acquired new important knowledge of the mechanism for Ni atom incorporation from the viewpoint of structural biology.

Academic Significance and Societal Importance of the Research Achievements

[NiFe]ヒドロゲナーゼはプロトンから水素分子への可逆的な酸化還元反応を触媒する.多くの細菌におけるエネルギー代謝に関わっており,次世代クリーンエネルギーとの関連からも注目されている.その活性中心であるNi,Feの金属クラスターを生体内でヒドロゲナーゼ前駆体に組み込んで機能をもつ酵素にするHyp成熟化タンパク質群を対象に構造生物学的研究を行った.ここでは,Hypタンパク質の一つとヒドロゲナーゼ前駆体との過渡的複合体の結晶構造の決定に成功した.その結果,成熟化反応の過程をスナップショットして捉えることができ,[NiFe]ヒドロゲナーゼの生体内機能を発現させる分子機構に重要な知見が得られた.

Report

(4 results)
  • 2020 Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (16 results)

All 2020 2019 2018 2017

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 4 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 5 results)

  • [Journal Article] Structural Biology of Maturation of [NiFe] Hydrogenases2020

    • Author(s)
      渡部 聡,三木邦夫
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 62 Issue: 2 Pages: 91-98

    • DOI

      10.5940/jcrsj.62.91

    • NAID

      130007849706

    • ISSN
      0369-4585, 1884-5576
    • Year and Date
      2020-05-31
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins2020

    • Author(s)
      Miki Kunio、Atomi Haruyuki、Watanabe Satoshi
    • Journal Title

      Accounts of Chemical Research

      Volume: 53 Issue: 4 Pages: 875-886

    • DOI

      10.1021/acs.accounts.0c00022

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of Protein Crystallography from Structural Biology to Biological Structural Chemistry2019

    • Author(s)
      三木邦夫
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 61 Issue: 2 Pages: 95-102

    • DOI

      10.5940/jcrsj.61.95

    • NAID

      130007659752

    • ISSN
      0369-4585, 1884-5576
    • Year and Date
      2019-05-31
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal Structures of a [NiFe] Hydrogenase Large Subunit HyhL in an Immature State in Complex with a Ni Chaperone HypA2018

    • Author(s)
      S. Kwon, S. Watanabe, Y. Nishitani, T. Kawashima, T. Kanai, H. Atomi, and K. Miki
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 115 Issue: 27 Pages: 7045-7050

    • DOI

      10.1073/pnas.1801955115

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of a [NiFe] Hydrogenase Maturation Protease HycI Provides Insights into Its Substrate Selectivity2018

    • Author(s)
      S. Kwon, Y. Nishitani, Y, Hirao, T. Kanai, H. Atomi, and K. Miki
    • Journal Title

      Biochim. Biophys. Res. Commun.

      Volume: 492 Issue: 4 Pages: 782-788

    • DOI

      10.1016/j.bbrc.2018.03.058

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] タンパク質結晶学のさらなる可能性 - 分子構造から電子構造へ -2019

    • Author(s)
      三木邦夫
    • Organizer
      日本結晶学会2019年度年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] タンパク質結晶学のさらなる可能性ー分子構造から電子構造へー2019

    • Author(s)
      三木邦夫
    • Organizer
      日本結晶学会2019年度年会(金沢市)
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Structures of a large subunit HyhL in complex with a Ni chaperone HypA reveal a key checkpoint for the [NiFe] hydrogenase maturation2018

    • Author(s)
      權 成鶴,渡部 聡,西谷優一,河島拓未,金井 保,跡見晴幸,三木邦夫
    • Organizer
      第18回日本蛋白質科学会年会(新潟市)
    • Related Report
      2018 Annual Research Report
  • [Presentation] 構造生物学から生物構造化学にいたるタンパク質結晶学の展開2018

    • Author(s)
      三木邦夫
    • Organizer
      日本結晶学会2018年度年会(東京都目黒区)
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化の分子機構:大サブユニットHyhLとNiシャペロンタンパク質HypAとの複合体の結晶構造2018

    • Author(s)
      權 成鶴,渡部 聡,西谷優一,河島拓未,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2018年度年会(東京都目黒区)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Structures of a large subunit HyhL in complex with a Ni chaperone HypA reveal a key checkpoint for the [NiFe] hydrogenase maturation2018

    • Author(s)
      Sunghark Kwon,渡部 聡,西谷優一,河島拓未,金井 保,跡見晴幸,三木邦夫
    • Organizer
      第18回日本蛋白質科学会年会,新潟市
    • Related Report
      2017 Annual Research Report
  • [Presentation] 構造生物学から生物構造化学にいたるタンパク質結晶学の展開2018

    • Author(s)
      三木邦夫
    • Organizer
      日本結晶学会2018年度年会,東京都目黒区
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化の分子機構:大サブユニットHyhLとNiシャペロンタンパク質HypAとの複合体の結晶構造2018

    • Author(s)
      Sunghark Kwon,渡部 聡,西谷優一,河島拓未,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2018年度年会,東京都目黒区
    • Related Report
      2017 Annual Research Report
  • [Presentation] Recent Topics on Metalloprotein Crystallography2017

    • Author(s)
      K. Miki
    • Organizer
      SYSU & HKU Symposium on Bioinorganic Chemistry, SunYat-Sen University, Guangzhou, China
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] [NiFe]ヒドロゲナーゼ大サブユニットと成熟化タンパク質 HypA との複合体のX線結晶構造解析2017

    • Author(s)
      Sunghark Kwon,渡部 聡,西谷優一,河島拓未,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2017年度年会,広島市
    • Related Report
      2017 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼと成熟化因子との複合体の結晶学的研究2017

    • Author(s)
      西谷優一,瀧口あさひ,石原和樹,河島拓未,渡部 聡,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2017年度年会,広島市
    • Related Report
      2017 Annual Research Report

URL: 

Published: 2017-04-28   Modified: 2022-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi