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High-resolution structural analysis of mitochondrial supercomplex and ATP synthase involved in ATP synthesis

Research Project

Project/Area Number 17H03646
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionUniversity of Hyogo

Principal Investigator

Shinzawa-Itoh Kyoko  兵庫県立大学, 生命理学研究科, 特任准教授 (70206316)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2019: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2018: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2017: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Keywords呼吸鎖超複合体 / ATP合成酵素 / ミトコンドリア / 呼吸鎖電子伝達系 / 複合体Ⅳ / supercomplex / ATP synthase / mitochondria / respiratory chain / Super complex / ミトコンドリア呼吸鎖 / ATP合成酵素(複合体V) / X線結晶構造解析 / ATP合成
Outline of Final Research Achievements

Mitochondrial respiratory complex I, III and IV organized into super complex convert energy from a series of electron transfer into a proton electrochemical gradient, harvested by complex V for synthesis of ATP. The structure and functions of the super complex and each respiratory complex, purified from bovine heart to retain their original structure and functions, were compared. In all crystals reported to date, bovine complex IV exists as a dimer. Based on the structural and functional comparison of the monomer and dimer, we propose that the monomer is the activated form. Two cardiolipins are located at the interface region in the super complex. The visible resonance Raman spectra of purified reactive super complex and mixture of its individual components enabled us to discuss the detailed active site structures, but no detectable differences were observed. This indicates that the formation of a super complex did not markedly change the structure or electronic state of heme.

Academic Significance and Societal Importance of the Research Achievements

2量体結晶構造が詳細に解明されてきた複合体Ⅳは、膜内及び超複合体内では単量体で存在し、単量体が活性型である事を示した。単量体結晶のX線結晶構造はカルジオリピンが複合体Ⅳの2量体形成ではなく複合体Ⅰ、Ⅲとの相互作用に関わることを示した。超複合体と各複合体混合溶液の振動分光学解析は会合が活性中心の大きな構造変化を伴わない事を示した。また、高い呼吸活性を示すが、比較的不飽和度が低く短鎖の脂質を含む流動性のある膜内で、密度を及び電子伝達体の割合を高くすることにより超複合体形成を伴わないで効率の良いATP合成を可能にしているショウジョウバエの適応は、ミトコンドリア内でのATP産生調節の多様性を示した。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (18 results)

All 2020 2019 2018 2017

All Journal Article (12 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 12 results,  Open Access: 8 results) Presentation (6 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Oversized ubiquinones as molecular probes for structural dynamics of the ubiquinone reaction site in mitochondrial respiratory complex I2020

    • Author(s)
      Uno, S., Masuya, T., Shinzawa-Itoh, K., Lasham, J., Haapanen, O., Shiba, T., Inaoka, D. K., Sharma, V., Murai, M., and Miyoshi, H.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 295 Issue: 8 Pages: 2449-2463

    • DOI

      10.1074/jbc.ra119.012347

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O2 activation and unidirectional proton-pump mechanisms2020

    • Author(s)
      A. Shimada, Y. Etoh, R. Kitoh-Fujisawa, A. Sasaki, K. Shinzawa-Itoh, T. Hiromoto, E. Yamashita, K. Muramoto, T. Tsukihara, S. Yoshikawa
    • Journal Title

      J. Biol. Chem.

      Volume: 295 Issue: 17 Pages: 5818-5833

    • DOI

      10.1074/jbc.ra119.009596

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Osmotic Pressure Effects Identify Dehydration upon Cytochrome c - Cytochrome c Oxidase Complex Formation Contributing to a Specific Electron Pathway Formation2020

    • Author(s)
      Sato, W., Hitaoka, S., Uchida, T., Shinzawa-Itoh, K., Yoshizawa, K., Yoshikawa, S., Ishimori, K.
    • Journal Title

      Biochem. J.

      Volume: 印刷中 Issue: 8 Pages: 1565-1578

    • DOI

      10.1042/bcj20200023

    • NAID

      120007029079

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Monomeric structure of an active form of bovine cytochrome c oxidase2019

    • Author(s)
      Shinzawa-Itoh Kyoko、Sugimura Takashi、Misaki Tomonori、Tadehara Yoshiki、Yamamoto Shogo、Hanada Makoto、Yano Naomine、Nakagawa Tetsuya、Uene Shigefumi、Yamada Takara、Aoyama Hiroshi、Yamashita Eiki、Tsukihara Tomitake、Yoshikawa Shinya、Muramoto Kazumasa
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Issue: 40 Pages: 19945-19951

    • DOI

      10.1073/pnas.1907183116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Purified F-ATP synthase forms a Ca2+dependent high-conductance channel matching the mitochondrial permeability transition pore.2019

    • Author(s)
      Urbani A,Giorgio V,Carrer A, Franchin C,Arrigoni G, Jiko C,Abe K,Maeda S, Sginzawa-Itoh K, Bogers JF, McMillan DG, Gerle C, Szabo I, Bernardi P
    • Journal Title

      Nature communications

      Volume: 4341 Issue: 1 Pages: 4341-4341

    • DOI

      10.1038/s41467-019-12331-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays.2019

    • Author(s)
      G. Ueno, A. Shimada, E. Yamashita, K. Hasegawa, T. Kumasaka, K. Shinzawa-Itoh, S. Yoshikawa, T. Tsukihara, M. Yamamoto.
    • Journal Title

      J Synchrotron Radiat.

      Volume: 26 Issue: 4 Pages: 912-921

    • DOI

      10.1107/s1600577519006805

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Higd1a improves respiratory function in the models of mitochondrial disorder2019

    • Author(s)
      Nagao Takemasa、Shintani Yasunori、Hayashi Takaharu、Kioka Hidetaka、Kato Hisakazu、Nishida Yuya、Yamazaki Satoru、Tsukamoto Osamu、Yashirogi Shohei、Yazawa Issei、Asano Yoshihiro、Shinzawa‐Itoh Kyoko、Imamura Hiromi、Suzuki Takeo、Suzuki Tsutomu、Goto Yu‐ichi、Takashima Seiji
    • Journal Title

      The FASEB Journal

      Volume: 34 Issue: 1 Pages: 1859-1871

    • DOI

      10.1096/fj.201800389r

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solubilization conditions for bovine heart mitochondrial membranes allow selective purification of large quantities of respiratory complexes I, III, and V2018

    • Author(s)
      Shimada S, Maeda S, Hikita M, Mieda-Higa K, Uene S, Nariai Y, Shinzawa-Itoh K
    • Journal Title

      Protein Expr Purif.

      Volume: 150 Pages: 33-43

    • DOI

      10.1016/j.pep.2018.04.015

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of bovine cytochrome c oxidase in the ligand-free reduced state at neutral pH2018

    • Author(s)
      Luo Fangjia、Shinzawa-Itoh Kyoko、Hagimoto Kaede、Shimada Atsuhiro、Shimada Satoru、Yamashita Eiki、Yoshikawa Shinya、Tsukihara Tomitake
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 74 Issue: 2 Pages: 92-98

    • DOI

      10.1107/s2053230x17018532

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Performance of a time-resolved IR facility for assessment of protonation T states and polarity changes in carboxyl groups in a large membrane protein, mammalian cytochrome c oxidase, under turnover conditions in a sub-millisecond time resolution2018

    • Author(s)
      Chen Li, Tatsuhito Nishiguchi, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Takashi Ogura, Satoru Nakashima
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1859 Issue: 10 Pages: 1045-1050

    • DOI

      10.1016/j.bbabio.2018.05.015

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity.2018

    • Author(s)
      1.Shimada A, Hatano K, Tadehara H, Yano N, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S.
    • Journal Title

      J Biol Chem.

      Volume: 293 Issue: 38 Pages: 14868-14879

    • DOI

      10.1074/jbc.ra118.003123

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A unique respiratory adaptation in Drosophila independent of supercomplex formation.2018

    • Author(s)
      Shimada S, Oosaki M, Takahashi R, Uene S, Yanagisawa S, Tsukihara T, Shinzawa-Itoh K.
    • Journal Title

      Biochim Biophys Acta.

      Volume: 1859 Issue: 2 Pages: 154-163

    • DOI

      10.1016/j.bbabio.2017.11.007

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Monomeric structure of an active form of bovine cytochrome c oxidase.2019

    • Author(s)
      Shinzawa-Itoh K., Sugimura T., Misaki T., Tadehara Y., Yamamoto S., Hanada M., Yano N., Nakagawa T., Uene S., Yamada T., Aoyama H., Yamashita E., Tsukihara T., Yoshikawa S., and Muramoto K.
    • Organizer
      日本生化学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Solubilization conditions for bovine heart mitochondrial membranes allow selective purification of large quantities of respiratory complexes I, III, and V2018

    • Author(s)
      Kyoko Shinzawa-Itoh
    • Organizer
      日本生化学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] A unique respiratory adaptation in Drosophila independent of supercomplex formation.2018

    • Author(s)
      Kyoko Shinzawa-Itoh
    • Organizer
      生物物理学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Complex structure of cytochrome c-cytochrome c oxidase reveals a novel interprotein interaction mode2017

    • Author(s)
      伊藤(新澤)恭子
    • Organizer
      第19回国際生物物理学(International Union for Pure and Applied Biophysics:IUPAB)大会
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Complex structure of cytochrome c-cytochrome c oxidase reveals a novel interprotein interaction mode2017

    • Author(s)
      伊藤(新澤)恭子
    • Organizer
      第9回国際構造生物学会(9th International Conference on Structural Biology)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ショウジョウバエのミトコンドリアにおける超複合体形成によらない独特の呼吸適応2017

    • Author(s)
      伊藤(新澤)恭子
    • Organizer
      2017年度生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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