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Establishment of Theoretical Method of Predicting Thermostabilizing Mutations for Membrane Proteins

Research Project

Project/Area Number 17H03663
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKyoto University

Principal Investigator

Kinoshita Masahiro  京都大学, エネルギー理工学研究所, 教授 (90195339)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2019: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2017: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Keywords膜蛋白質 / G蛋白質共役型受容体 / ロドプシン / 耐熱化 / アミノ酸置換 / 統計熱力学 / 積分方程式論 / エントロピー / G蛋白質共役受容体 / 立体構造
Outline of Final Research Achievements

For seven-transmembrane proteins, we developed a statistical-mechanical theory enabling us to evaluate the thermostability from the structures, microscopic geometric characteristics. An originality of the theory is the incorporation of effects of translational, configurational entropy of hydrocarbon groups within the lipid bilayer. We found that mutating the residue at a position of NBW=3.39 (NBW is the BW number) to Lys or Arg leads to substantially higher thermostability for significantly many GPCRs of Class A in the inactive state. The structures of some of them were newly determined. TR and XR or RxR and HsBR (rhodopsins) are quite different in the thermostability despite their high sequence similarity. These experimental facts could be elucidated by our theory.

Academic Significance and Societal Importance of the Research Achievements

膜蛋白質は水環境中にある細胞外・細胞内領域と無極性環境中にある膜内領域から成り,水溶性蛋白質よりも複雑である。現在市販されている薬の60%以上が膜蛋白質を標的としているが,その安定性が低いため,立体構造決定や精製標品を用いた薬剤のスクリーニング系の開発が困難である。本研究によって,7回膜貫通ヘリックス構造を有する膜蛋白質の折り畳みの物理描像がほぼ完成され,かつ,アミノ酸置換による膜蛋白質の安定性向上を論理的に実現することが可能となった。各膜蛋白質に関連する生命機能や疾病原因の理解,様々な病気の治療薬の開発などに至る我が国のライフサイエンスの推進に大きく貢献できるものと考えられる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (62 results)

All 2020 2019 2018 2017 2016 Other

All Journal Article (26 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 23 results,  Open Access: 5 results,  Acknowledgement Compliant: 1 results) Presentation (33 results) (of which Int'l Joint Research: 4 results,  Invited: 1 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Elucidation of cosolvent effects thermostabilizing water-soluble and membrane proteins2020

    • Author(s)
      Yasuda Satoshi、Kazama Kazuki、Akiyama Tomoki、Kinoshita Masahiro、Murata Takeshi
    • Journal Title

      Journal of Molecular Liquids

      Volume: 301 Pages: 112403-112403

    • DOI

      10.1016/j.molliq.2019.112403

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?2020

    • Author(s)
      Hayashi Tomohiko、Yasuda Satoshi、Suzuki Kano、Akiyama Tomoki、Kanehara Kanae、Kojima Keiichi、Tanabe Mikio、Kato Ryuichi、Senda Toshiya、Sudo Yuki、Murata Takeshi、Kinoshita Masahiro
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 124 Issue: 6 Pages: 990-1000

    • DOI

      10.1021/acs.jpcb.9b10700

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hydration properties of a protein at low and high pressures: Physics of pressure denaturation2020

    • Author(s)
      Inoue Masao、Hayashi Tomohiko、Hikiri Simon、Ikeguchi Mitsunori、Kinoshita Masahiro
    • Journal Title

      The Journal of Chemical Physics

      Volume: 152 Issue: 6 Pages: 065103-065103

    • DOI

      10.1063/1.5140499

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methodology for Further Thermostabilization of an Intrinsically Thermostable Membrane Protein Using Amino Acid Mutations with Its Original Function Being Retained2020

    • Author(s)
      Yasuda Satoshi、Akiyama Tomoki、Nemoto Sayaka、Hayashi Tomohiko、Ueta Tetsuya、Kojima Keiichi、Tsukamoto Takashi、Nagatoishi Satoru、Tsumoto Kouhei、Sudo Yuki、Kinoshita Masahiro、Murata Takeshi
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 60 Issue: 3 Pages: 1709-1716

    • DOI

      10.1021/acs.jcim.0c00063

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development and structural determination of an anti-PrPC aptamer that blocks pathological conformational conversion of prion protein2020

    • Author(s)
      Mashima Tsukasa、Lee Joon-Hwa、Kamatari Yuji O.、Hayashi Tomohiko、Nagata Takashi、Nishikawa Fumiko、Nishikawa Satoshi、Kinoshita Masahiro、Kuwata Kazuo、Katahira Masato
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 4934-4934

    • DOI

      10.1038/s41598-020-61966-4

    • NAID

      120006813315

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] サーモフィリックロドプシンの極めて高い熱安定性に関する統計熱力学的解析2020

    • Author(s)
      安田賢司,林智彦,村田武士,木下正弘
    • Journal Title

      月刊「細胞」,ニュー・サイエンス社

      Volume: 52 Pages: 37-41

    • Related Report
      2019 Annual Research Report
  • [Journal Article] サーモフィリックロドプシンとキサントロドプシンの熱安定性の大きな違いに対する統計熱力学解析2020

    • Author(s)
      安田賢司,林智彦,村田武士,木下正弘
    • Journal Title

      アグリバイオ, 北隆館

      Volume: 4 Pages: 31-67

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Accurate and rapid calculation of hydration free energy and its physical implication for biomolecular functions2020

    • Author(s)
      Kinosita Masahiro、Hayashi Tomohiko
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 2 Pages: 469-480

    • DOI

      10.1007/s12551-020-00686-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical identification of thermostabilizing amino acid mutations for G-protein-coupled receptors2020

    • Author(s)
      Takeshi Murata、Satoshi Yasuda、Tomohiko Hayashi、Masahiro Kinoshita
    • Journal Title

      Biophysical Reviews

      Volume: - Issue: 2 Pages: 323-332

    • DOI

      10.1007/s12551-020-00678-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of globule-to-coil transition of poly(N-isopropylacrylamide) in water: Relevance to cold denaturation of a protein2019

    • Author(s)
      Inoue Masao、Hayashi Tomohiko、Hikiri Simon、Ikeguchi Mitsunori、Kinoshita Masahiro
    • Journal Title

      Journal of Molecular Liquids

      Volume: 292 Pages: 111374-111374

    • DOI

      10.1016/j.molliq.2019.111374

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reduced density profile of small particles near a large particle: Results of an integral equation theory with an accurate bridge function and a Monte Carlo simulation2019

    • Author(s)
      Nakamura Yuka、Arai Shota、Kinoshita Masahiro、Yoshimori Akira、Akiyama Ryo
    • Journal Title

      The Journal of Chemical Physics

      Volume: 151 Issue: 4 Pages: 044506-044506

    • DOI

      10.1063/1.5100040

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How Does the Recently Discovered Peptide MIP Exhibit Much Higher Binding Affinity than an Anticancer Protein p53 for an Oncoprotein MDM22019

    • Author(s)
      Yamada Tatsuya、Hayashi Tomohiko、Hikiri Simon、Kobayashi Naohiro、Yanagawa Hiroshi、Ikeguchi Mitsunori、Katahira Masato、Nagata Takashi、Kinoshita Masahiro
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 59 Issue: 8 Pages: 3533-3544

    • DOI

      10.1021/acs.jcim.9b00226

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface2019

    • Author(s)
      Toyoda Y, Morimoto K, Suno R, et al.
    • Journal Title

      Nature Chemical Biology

      Volume: 15 Issue: 1 Pages: 18-26

    • DOI

      10.1038/s41589-018-0131-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analyses based on statistical thermodynamics for large difference between thermophilic rhodopsin and xanthorhodopsin in terms of thermostability2019

    • Author(s)
      Yasuda Satoshi、Hayashi Tomohiko、Kajiwara Yuta、Murata Takeshi、Kinoshita Masahiro
    • Journal Title

      The Journal of Chemical Physics

      Volume: 150 Issue: 5 Pages: 055101-055101

    • DOI

      10.1063/1.5082217

    • NAID

      40022492153

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An Accurate and Rapid Method for Calculating Solvation Free Energies of a Variety of Solutes Including Proteins2019

    • Author(s)
      S. Hikiri, T. Hayashi, M. Inoue, T. Ekimoto, M. Ikeguchi, M. Kinoshita
    • Journal Title

      Journal of Chemical Physics

      Volume: 150 Issue: 17 Pages: 175101-175101

    • DOI

      10.1063/1.5093110

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Physical Origin of Thermostabilization by a Quadruple Mutation for the Adenosine A2a Receptor in the Active State2018

    • Author(s)
      Y. Kajiwara, S. Yasuda, S. Hikiri, T. Hayashi, M. Ikeguchi, T. Murata, M. Kinoshita
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 122 Issue: 16 Pages: 4418-4427

    • DOI

      10.1021/acs.jpcb.8b00443

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Statistical thermodynamics for the unexpectedly large difference between disaccharide stereoisomers in terms of solubility in water.2018

    • Author(s)
      Hikiri S, Hayashi T, Ikeguchi M, Kinoshita M.
    • Journal Title

      Phys Chem Chem Phys.

      Volume: 20 Issue: 36 Pages: 23684-23693

    • DOI

      10.1039/c8cp04377a

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Insights into the Subtype Selective Antagonist Binding to the M2 Muscarinic Receptor2018

    • Author(s)
      R. Suno, S. Lee, S. Maeda, S. Yasuda, K. Yamashita, K. Hirata, S. Horita, M.S. Tawaramoto, H. Tsujimoto, T. Murata, M. Kinoshita, N. Vaidehi, M. Yamamoto, B. K. Kobilka, S. Iwata, T. Kobayashi
    • Journal Title

      Nature Chemical Biology

      Volume: 14 Issue: 12 Pages: 1150-1158

    • DOI

      10.1038/s41589-018-0152-y

    • NAID

      130007811924

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of protein-RNA recognition: analysis based on the statistical mechanics of hydration2018

    • Author(s)
      Hayashi Tomohiko, Matsuda Tomoaki, Nagata Takashi, Katahira Masato, Kinoshita Masahiro
    • Journal Title

      Phys Chem Chem Phys

      Volume: 20 Issue: 14 Pages: 9167-9180

    • DOI

      10.1039/c8cp00155c

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of Thermostabilizing Mutations for a Membrane Protein Whose Three-Dimensional Structure is Unknown2017

    • Author(s)
      Y. Kajiwara, S. Yasuda, Y. Takamuku, T. Murata, and M. Kinoshita
    • Journal Title

      Journal of Computational Chemistry

      Volume: 38 Issue: 4 Pages: 211-223

    • DOI

      10.1002/jcc.24673

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hot-Spot Residues to be Mutated Common in G Protein-Coupled Receptors of Class A: Identification of Thermostabilizing Mutations Followed by Determination of Three-Dimensional Structures for Two Example Receptors.2017

    • Author(s)
      Yasuda S, Kajiwara Y, Toyoda Y, Morimoto K, Suno R, Iwata S, Kobayashi T, Murata T, Kinoshita M
    • Journal Title

      J. Phys. Chem. B

      Volume: 121 Issue: 26 Pages: 6341-6350

    • DOI

      10.1021/acs.jpcb.7b02997

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Unraveling Protein Folding Mechanism by Analyzing the Hierarchy of Models with Increasing Level of Detail2017

    • Author(s)
      T. Hayashi, S. Yasuda, T. Skrbic, A. Giacometti, M. Kinoshita
    • Journal Title

      Journal of Chemical Physics

      Volume: 147 Issue: 12

    • DOI

      10.1063/1.4999376

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Unified Elucidation of the Entropy-Driven and -Opposed Hydrophobic Effects2017

    • Author(s)
      M. Kinoshita, T. Hayashi
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 19 Issue: 38 Pages: 25891-25904

    • DOI

      10.1039/c7cp05160c

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Entropic Enrichment of Cosolvent near a Very Large Solute Immersed in Solvent-Cosolvent Binary Mixture2017

    • Author(s)
      M. Kinoshita, T. Hayashi
    • Journal Title

      Journal of Molecular Liquids

      Volume: 247 Pages: 403-410

    • DOI

      10.1016/j.molliq.2017.09.108

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 膜タンパク質の耐熱化に繋がるアミノ酸置換の理論的予測2017

    • Author(s)
      木下正弘,村田武士
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 75 Pages: 33-36

    • Related Report
      2017 Annual Research Report
  • [Journal Article] High-rate charging of zinc anodes achieved by tuning hydration properties of zinc complexes in water confined within nanopores2016

    • Author(s)
      Akira Koyama, Kazuhiro Fukami, Yuya Suzuki, Atsushi Kitada, Tetsuo Sakka, Takeshi Abe, Kuniaki Murase, Masahiro Kinoshita
    • Journal Title

      J. Phys. Chem. C

      Volume: 120 Issue: 25 Pages: 24112-24120

    • DOI

      10.1039/c7cp01157a

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Development of the screening system to create GPCR mutants2020

    • Author(s)
      R. Nakano, N. Suzuki, S. Hikiri, S. Yasuda, M. Shiroishi, M. Kinoshita, T. Murata
    • Organizer
      発動分子科学第三回領域会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] 統計熱力学に基づいた膜タンパク質―化合物結合自由エネルギー関数の開発2019

    • Author(s)
      梶原佑太,安田賢司,林智彦,村田武士,広川貴次,木下正弘
    • Organizer
      第19回日本蛋白質科学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Statistical thermodynamics on the weakening of binding affinity of myosin for actin at low temperatures2019

    • Author(s)
      T. Hayashi, M. Kinoshita
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Physics of drastic decrease in water solubility upon coil-to-globule transition of poly(N-isopropylacrylamide)2019

    • Author(s)
      M. Inoue, T. Hayashi, S. Hikiri, M. Kinoshita
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Theoretical prediction of thermostabilizing mutations for GPCR: Identification of hot-spot residues to be mutated common in Class A GPCRs2019

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, Y. Toyoda, K. Morimoto, R. Suno, S. Iwata, T. Kobayashi, T. Murata, M. Kinoshita
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural insights into the subtype-selective antagonist binding to the M2 muscarinic receptor2019

    • Author(s)
      R. Suno, S. Lee, S. Maeda, S. Yasuda, K. Yamashita, K. Hirata, T. Murata, M. Kinoshita, M. Yamamoto, B. Kobilka, N. Vaidehi, S. Iwata, T. Kobayashi
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] The influence of cosolvent on thermal stability of membrane proteins2019

    • Author(s)
      K. Kazama, S. Yasuda, T. Akiyama, M. Kinoshita, T. Murata
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Development of the screening system to create GPCR mutants stabilized in active states2019

    • Author(s)
      R. Nakano, N. Suzuki, S. Hikiri, S. Yasuda, M. Shiroishi, M. Kinoshita, T. Murata
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analyses based on statistical thermodynamics for large difference between thermophilic rhodopsin and xanthorhodopsin in terms of thermostability2019

    • Author(s)
      S. Yasuda, T. Hayashi, Y. Kajiwara, T. Murata, M. Kinoshita
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] サーモフィリックロドプシンとキサントロドプシンの熱安定性の大きな違いの統計熱力学的解析2019

    • Author(s)
      安田賢司,林智彦,梶原佑太,村田武士,木下正弘
    • Organizer
      ImPACT野地プログラム「豊かで安全な社会と新しいバイオものづくりを実現する人工細胞リアクタ」最終成果報告会 ~人工細胞リアクタが拓くイノベーション~
    • Related Report
      2018 Annual Research Report
  • [Presentation] Identification of thermostabilizing mutations for G-protein coupled receptors: Rapid method based on statistical thermodynamics2018

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Takamuku, N. Suzuki, Y. Toyoda, K. Morimoto, R. Suno, S. Iwata, T. Kobayashi, T. Murata, M. Kinoshita
    • Organizer
      ImPACT野地プログラム国際シンポジウム“Artificial Cell Reactor Science and Technology”
    • Related Report
      2018 Annual Research Report
  • [Presentation] Radial distribution functions for hard sphere fluid calculated by MC and by an integral equation theory with a bridge function2018

    • Author(s)
      Y. Nakamura, S. Arai, A. Yoshimori, M. Kinoshita, R. Akiyama
    • Organizer
      The 12th Mini-Symposium on Liquids (MSL2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diffusion coefficient of a large particle calculated by radial distribution functions in hard-sphere systems2018

    • Author(s)
      Y. Nakamura, A. Yoshimori, S. Arai, M. Kinoshita, R. Akiyama
    • Organizer
      The 12th Mini-Symposium on Liquids (MSL2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural and theoretical insights into the RNA-recognition mechanism by Musashi-12018

    • Author(s)
      T. Nagata, R. Iwaoka, T. Hayashi, K. Tsuda, N. Kobayashi, M. Kinoshita, M. Katahira
    • Organizer
      XXVIII International Conference on Magnetic Resonance in Biological Systems
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Statistical thermodynamics on the large difference between thermophilic rhodopsin and xanthorhodopsin in terms of thermostability2018

    • Author(s)
      S. Yasuda, T. Hayashi, Y. Kajiwara, T. Murata, M. Kinoshita
    • Organizer
      第79回岡崎コンファレンス
    • Related Report
      2018 Annual Research Report
  • [Presentation] Statistical thermodynamics on the large difference between maltose and cellobiose in terms of solubility in water2018

    • Author(s)
      S. Hikiri, T. Hayashi, M. Ikeguch, M. Kinoshita
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Physical origin of the large difference between MDM2-p53NTD and -MIP complexes in binding free energy2018

    • Author(s)
      T. Yamada, T. Hayashi, N. Kobayashi, H. Yanagawa, M. Katahira, T. Nagata, M. Kinoshita
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Effects of solvent species on the stabilized structure of a protein2018

    • Author(s)
      T. Hayashi, M. Inoue, S. Yasuda, E. Petretto, T. Skrbic, A. Giacometti, M. Kinoshita
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Statistical thermodynamics for the extremely high thermostability of a microbial rhodopsin from the eubacterium Rubrobacter (RxR)2018

    • Author(s)
      T. Hayashi, S. Yasuda, K. Suzuki, T. Akiyama, K. Kanehara, Y. Sudo, T. Murata, M. Kinoshita
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Physical origin of exceptionally high thermostability of thermophilic rhodopsin2018

    • Author(s)
      S. Yasuda, T. Hayashi, Y. Kajiwara, T. Murata, M. Kinoshita
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Thermostabilization of the microbial rhodopsin TR by carotenoid binding and amino-acid mutation2018

    • Author(s)
      T. Akiyama, K. Nishikawa, S. Nemoto, S. Yasuda, D. Umeno, M. Kinoshita, Y. Sudo, T. Murata
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 理論計算と進化工学を融合した効率的なGPCR安定化変異体スクリーニング系の構築2018

    • Author(s)
      佐藤愼吾,鈴木七緒,梶原佑太,安田賢司,仲井宏紀,一色衣香,松浦友亮,木下正弘,村田武士
    • Organizer
      日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 理論計算と進化分子工学を融合したGPCR安定化変異体スクリーニング系の構築2018

    • Author(s)
      佐藤愼吾,鈴木七緒,梶原佑太,安田賢司,仲井宏紀,一色衣香,松浦友亮,木下正弘,村田武士
    • Organizer
      日本生体エネルギー研究会第44回討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] メラトニン1A受容体の高発現・熱安定化改変体の創出2018

    • Author(s)
      扇谷和希,佐藤愼吾,鈴木七緒,安田賢司,白石充典,木下 正弘,村田武士
    • Organizer
      日本生体エネルギー研究会第44回討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] GPCR活性型変異体スクリーニング系の構築2018

    • Author(s)
      中野僚介,肥喜里志門,安田賢司,白石充典,木下正弘,村田武士
    • Organizer
      日本生体エネルギー研究会第44回討論会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Statistical thermodynamics for remarkably high thermal stability of thermophilic rhodopsin2018

    • Author(s)
      S. Yasuda, Y. Kajiwara, T. Murata, M. Kinoshita
    • Organizer
      The Second Symposium of Chiral Molecular Science and Technology in Chiba University -Advanced Materials Science, Biology & Nanophotonics in Chiba-
    • Related Report
      2017 Annual Research Report
  • [Presentation] 統計熱力学に基づく膜タンパク質の熱安定化変異体予測法の開発2018

    • Author(s)
      村田武士,木下正弘
    • Organizer
      CREST/さきがけ合同成果報告会,「生命を解き明かす~タンパク質構造から見えてくる世界~」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Theoretical identification of hot-spot residues to be mutated common in G protein-coupled receptors of class A2018

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Toyoda, K.Morimoto, R. Suno, S. Iwata, T. Kobayashi, T. Murata, M. Kinoshita
    • Organizer
      Biophysical Society 62nd Annual Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Unraveling protein folding mechanism by analyzing the hierarchy of models with increasing level of detail2017

    • Author(s)
      T. Hayashi, S. Yasuda, T. Skrbic, A. Giacometti, M. Kinoshita
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Physical origin of stabilization by a quadruple mutation for theadenosine A2a receptor in the active state2017

    • Author(s)
      Y. Kajiwara, S. Yasuda, M. Ikeguchi, T. Murata, M. Kinoshita
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Theoretical identification of hot-spot residues to be mutated common in G protein-coupled receptors of class A2017

    • Author(s)
      S. Yasuda, Y. Kajiwara, Y. Toyoda, K. Morimoto, R. Suno, S. Iwata, T. Kobayashi, T. Murata, M. Kinoshita
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Identification of thermostabilizing mutations for a G- protein coupled receptor in the active state2017

    • Author(s)
      S. Hikiri, R. Nakano, N. Suzuki, S. Yasuda, Y. Kajiwara, M. Kinoshita, T. Murata
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] サーモフィリックロドプシンの極めて高い熱安定性に対する統計熱力学的解析2017

    • Author(s)
      安田賢司,梶原佑太,村田武士,木下正弘
    • Organizer
      日本生体エネルギー研究会第43回討論会
    • Related Report
      2017 Annual Research Report
  • [Book] 膜タンパク質工学ハンドブック,第2編,第15節「膜タンパク質の理論的耐熱化法を開発」2020

    • Author(s)
      木下正弘
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2019 Annual Research Report
  • [Book] Springer Briefs in Molecular Science2018

    • Author(s)
      M. Kinoshita
    • Total Pages
      21
    • Publisher
      Springer
    • ISBN
      9789811084584
    • Related Report
      2018 Annual Research Report
  • [Remarks] 木下研究室-京都大学エネルギー理工学研究所

    • URL

      http://www.iae.kyoto-u.ac.jp/centerbunya/kinoshita/

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report 2017 Annual Research Report

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Published: 2017-04-28   Modified: 2021-02-19  

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