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Structural basis for the centripetal transport mechanism

Research Project

Project/Area Number 17H03665
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

KON Takahide  大阪大学, 大学院理学研究科, 教授 (30332620)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2020: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2019: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywords細胞内物質輸送 / 構造生物学 / 生物物理学 / 分子モーター / ナノマシン / ダイニン / 微小管 / 構造生命科学
Outline of Final Research Achievements

Dynein is a huge microtubule-based motor protein complex that drives a wide range of biological processes in eukaryotic cells, including cell division, cell migration and intracellular centripetal trafficking. However, the mechanism by which dynein moves along microtubules, which underlies its diverse intracellular functions, is still a mystery. In this study, we discovered a novel intermediate state in the dynein force generation process and determined its structure at near-atomic resolution. This study provides a structural basis for understanding the mechanism underlying dynein-based centripetal transport system.

Academic Significance and Societal Importance of the Research Achievements

本研究成果は、細胞内物質輸送・細胞移動・細胞分裂など本質的な生命活動の分子・原子レベルでの理解に貢献するもので、理学的な観点から十分な学術的意義があると考えられる。また本研究は、細胞内物質輸送機構の機能不全と深く関連する疾病(不妊・気道障害・神経変性疾患など)の発症機構理解への寄与も期待される。

Report

(5 results)
  • 2022 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (36 results)

All 2023 2022 2020 2019 2018 2017 Other

All Int'l Joint Research (9 results) Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 5 results) Presentation (20 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Remarks (1 results)

  • [Int'l Joint Research] University of Leeds(英国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Paul Scherrer Institut(スイス)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Connecticut/University of Georgia(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Paul Scherrer Institute(スイス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Connecticut Health Center/Emory University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Paul Scherrer Institute(スイス)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Connecticut Health Center/Emory University(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of London(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Paul Sherrer Institut(スイス)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Mutations in PIH proteins MOT48, TWI1 and PF13 define common and unique steps for preassembly of each, different ciliary dynein2020

    • Author(s)
      Ryosuke Yamamoto, Shiho Yanagi, Masahito Nagao, Yuya Yamasaki, Yui Tanaka, Winfield S. Sale, Toshiki Yagi, Takahide Kon
    • Journal Title

      PLOS Genetics

      Volume: 16 Issue: 11 Pages: e1009126-e1009126

    • DOI

      10.1371/journal.pgen.1009126

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Small stepping motion of processive dynein revealed by load-free high-speed single-particle tracking2020

    • Author(s)
      Ando J, Shima T, Kanazawa R, Shimo-Kon R, Nakamura A, Yamamoto M, Kon T, Iino R
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 1080-1080

    • DOI

      10.1038/s41598-020-58070-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular dissection of ALS-linked TDP-43: involvement of the Gly-rich domain in interaction with G-quadruplex mRNA.2020

    • Author(s)
      Ishiguro A, Kimura N, Noma T, Shimo-Kon R, Ishihama A, Kon T.
    • Journal Title

      FEBS letter

      Volume: - Issue: 14 Pages: 2254-2265

    • DOI

      10.1002/1873-3468.13800

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural and Functional Analysis of the Dynein Motor Domain2019

    • Author(s)
      Shima T., Kon, T.
    • Journal Title

      Handbook of Dynein 2nd edition (Amos, L and Hirose, K., Eds)

      Volume: 1 Pages: 37-66

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 動物細胞に共通する細胞内の輸送システム2018

    • Author(s)
      今井洋,昆隆英
    • Journal Title

      生産と技術

      Volume: 70 Pages: 73-76

    • NAID

      40021703280

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] Chlamydomonas DYX1C1/PF23 is essential for axonemal assembly and propermorphology of inner dynein arms2017

    • Author(s)
      Yamamoto, R., Obbineni, J.M., Alford, L.M., Ide, T., Owa, M., Hwang, J., Kon, T., Inaba, K., James, N., King, S.M., Ishikawa, T., Sale, W.S., Dutcher, S.K.
    • Journal Title

      PLoS Genet.

      Volume: 13 Issue: 9 Pages: e1006996-e1006996

    • DOI

      10.1371/journal.pgen.1006996

    • NAID

      120007134773

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 電子顕微鏡単粒子解析法による繊毛ダイニン新規構造の解明2023

    • Author(s)
      雷宜慈, 今井洋, 山本遼介, 重兼拓実, 下理恵子, 上村慎治, 八木俊樹, 梶村直子, 光岡薫, 昆隆英
    • Organizer
      生体運動研究合同班会議2023
    • Related Report
      2020 Annual Research Report
  • [Presentation] ダイニンメカニズム解明の新展開2022

    • Author(s)
      重兼拓実, 今井洋, 昆隆英
    • Organizer
      第11回分子モーター討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] In situ localization of a novel ciliary-dynein subunit having a light-sensing domain revealed by cryo-electron tomography2020

    • Author(s)
      Yusuke Yamamoto, Yuhei Nakagiri, Osamu Kutomi, Hiroshi Imai, Song Chihong, Kazuyoshi Murata, Kaoru Mitsuoka, Ken-ichi Wakabayashi, Takashi Ishikawa, Kazuo Inaba and Takahide Kon
    • Organizer
      顕微鏡学会第76回学術講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Release mechanism of the shutdown state of cytoplasmic dynein revealed by electron microscopy2020

    • Author(s)
      Yui Kurume, Hiroshi Imai, Kazuki Iwasaki, Shinji Kamimura, Reiko Shimo-Kon, Ryosuke Yamamoto, Takahide Kon
    • Organizer
      第58回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Novel ciliary dynein structure revealed by negative stain EM2020

    • Author(s)
      Yici Lei, Hiroshi Imai, Ryosuke Yamamoto, Akira Fukunaga, Reiko Shimo-Kon, Shinji Kamimura, Toshiki Yagi, Takahide Kon
    • Organizer
      第58回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Effects of high hydrostatic pressure on intracellular Ca2+ concentration of sea urchin live sperm2020

    • Author(s)
      Hiroshi Imai, Yumiko Kaminoe, Yoshie Harada, Takahide Kon, Masayoshi Nishiyama, Shinji Kamimura
    • Organizer
      第58回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] How could planarians glide over a substrate at a high speed?2020

    • Author(s)
      Hiroshi Imai, Toshiya Kawasaki, Chihong Song, Kazuyoshi Murata, Takahide Kon, Shinji Kamimura
    • Organizer
      第42回エアロ・アクアバイオメカニズム学会講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 高タンパク質濃度条件下のタンパク質複合体の構造を観察するための新規のネガティブ染色電子顕微鏡法2019

    • Author(s)
      今井洋,中桐侑平,Gerle,C,武藤悦子,栗栖源嗣,昆隆英
    • Organizer
      生体運動合同班会議
    • Related Report
      2018 Annual Research Report
  • [Presentation] ALS-linked G-quadruplex binding proteins TDP-43 and FUS have common and distinct roles in the molecular interaction mechanisms2019

    • Author(s)
      Ishiguro A, Kimura N, Katayama A, Kon T.
    • Organizer
      NEURO2019
    • Related Report
      2018 Annual Research Report
  • [Presentation] Structural/functional analyses on MOT7, a novel light chain of ciliary dynein f/I12019

    • Author(s)
      Yamamoto R, Nakagiri Y, Kutomi O, Imai H, Wakabayash K, Ishikawa T, Inaba K, Kon T
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] The research about movement directionality dependent on the microtubule binding domain of cytoplasmic dynein2019

    • Author(s)
      Kubo S, Shima T, Kon T, Takada S
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] A newly developed negative staining method for high protein concentration of the protein complexes2019

    • Author(s)
      Imai H, Kato T, Gerle C, Muto E, Kurisu G, Namba K, Kon T.
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Cryo-electron tomography revealed localization of a novel ciliary dynein subunit, MOT7.2019

    • Author(s)
      Yamamoto R, Nakagiri Y, Kutomi O, Imai H, Song C, Murata K, Mitsuoka K, Wakabayashi K, Ishikawa T, Inaba K, Kon T.
    • Organizer
      生理研究会「クライオ電子顕微鏡によるタンパク質の高分解能単粒子構造解析」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Guanine oxidization of G-quadruplex affects TDP-43 dependent mRNA transport2018

    • Author(s)
      Ishiguro A, Kimura N, Noma T, Kon T.
    • Organizer
      5th RNA Metabolism in Neurological Disease Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Single-particle tracking of motor domain of a processive dynein at microsecond time resolution and nanometer localization precision2018

    • Author(s)
      Ando J, Shima T, Nakamura A, Akasit V, Yamamoto M, Kon T, Iino R.
    • Organizer
      第56回日本生物物理学会年会2018
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular mechanisms of interaction between ALS causative proteins and an RNA G-quadruplex2018

    • Author(s)
      Ishiguro A, Kimura N, Noma T, Kon T.
    • Organizer
      第41回日本日本分子生物年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] A new negative staining EM method at high protein concentration for sample evaluation of cryo-EM single particle analysis2018

    • Author(s)
      Imai H, Kato T, Gerle C, Muto E, Kurisu G, Namba K, Kon T.
    • Organizer
      生理研究会「クライオ電子顕微鏡によるタンパク質の高分解能単粒子構造解析」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Struture and mechanism of dynein motors2017

    • Author(s)
      Takahide Kon
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Multiscale Simulations of Cytoplasmic Dynein: From All-atom to Continuum Mechanics2017

    • Author(s)
      Shinji Iida, Benjamin Hanson, Narutoshi Kamiya, Genji Kurisu, Takahide Kon, Haruki Nakamura, Sarah Harris
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] How does cytoplasmic dynein look like while dynein stepping along microtubules2017

    • Author(s)
      Hiroshi Imai and Takahide Kon
    • Organizer
      International Workshop Dynein 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Remarks] 大阪大学大学院理学研究科生物科学専攻・昆研究室

    • URL

      http://www.bio.sci.osaka-u.ac.jp/bio_web/lab_page/kon/

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report

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Published: 2017-04-28   Modified: 2024-01-30  

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