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Development of methodology using environmental DNA to monitor insect pathogens of forest defoliating insects

Research Project

Project/Area Number 17H03826
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Forest science
Research InstitutionThe University of Tokyo

Principal Investigator

Kamata Naoto  東京大学, 大学院農学生命科学研究科(農学部), 教授 (90303255)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥15,860,000 (Direct Cost: ¥12,200,000、Indirect Cost: ¥3,660,000)
Fiscal Year 2020: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2019: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2018: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords昆虫病原性糸状菌 / 土壌DNA / 環境DNA / アンプリコン解析 / 次世代シーケンス / 菌類 / ブナ林 / 土壌 / メタゲノム解析 / 空間異質性 / OTU数 / リン酸バッファー / 昆虫病原菌 / 土壌微生物 / モニタリング / ブナアオシャチホコ / カラマツハラアカハバチ / 葉食性昆虫 / 大発生 / DNA / メタゲノム / 森林昆虫 / qPCR / インタカレータ法 / 天敵微生物 / 森林葉食性昆虫 / 定量
Outline of Final Research Achievements

Spatial variation in fungal communities in forest soils is high. Entomopathogenic fungi include important natural enemies of forest insects, but their information is limited except during outbreaks, partly because many of them live in soil. The objective of this study was to develop a method for monitoring entomopathogenic fungi in soil using environmental DNA methods. Three different methods were used to extract DNA from 0.4 g (according to a kit recipe) and 15 g (intention to collect fungal DNA more widely) of soil volume. Amplicon analysis was performed using next-generation sequencers. Contrary to expectations, the smaller the amount of soil used for extraction, the greater number of fungal OTU were detected. The results of this study indicate that the best strategy is to sample a large number of small soil samples.

Academic Significance and Societal Importance of the Research Achievements

目にみえない土壌中に生息する菌類のモニタリング手法として環境DNAを用いた次世代シーケンスによるアンプリコン解析の手法開発を検討した。抽出に用いる土壌量を増やすことにより菌類DNAをより網羅的に捕捉することを目指したが、予想とは逆に、少ない土壌量の方がより網羅的な抽出が可能であった。これは土壌量を増やすと腐植酸などの影響により抽出が阻害されることが原因の一つと考えられた。実際にこれまでも、同様の視点から大量の土壌を使ったDNA抽出技術の開発が行われてきたが、本研究の結果は、これらの研究に一石を投じるものである。

Report

(5 results)
  • 2022 Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (4 results)

All 2020 2019 2018

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (2 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] 東京大学北海道演習林における樹木のフェノロジーデータで元データが紛失した1938~1950年の期間平均値の推定2019

    • Author(s)
      鎌田直人
    • Journal Title

      東京大学演習林報告

      Volume: 140 Pages: 1-13

    • NAID

      120006594551

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 東京大学北海道演習林における1930~2010年の長期樹木フェノロジーデータ2019

    • Author(s)
      鎌田直人・木村徳志・井口和信・福岡 哲・小川 瞳・笠原久臣・芝野伸策・高橋康夫・犬飼雅子・佐々木忠兵衛・功力六郎・佐々木与八
    • Journal Title

      演習林(東大)

      Volume: 61 Pages: 45-63

    • NAID

      120006623636

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 産地試験を用いたブナとブナカイガラタマバエ とのフェノロジカルカスケード2020

    • Author(s)
      野中佳祐
    • Organizer
      日本森林学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Long-term forest insect research using litter traps: treasures in litter2018

    • Author(s)
      Naoto KAMATA
    • Organizer
      The 9th Symposium of Asian University Forest Consortium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research

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Published: 2017-04-28   Modified: 2024-01-30  

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