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Analysis of dynamic structural rearrangements of functioning ion channels by fluorescent unnatural amino acid

Research Project

Project/Area Number 17H04021
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General physiology
Research InstitutionNational Institute for Physiological Sciences

Principal Investigator

KUBO YOSHIHIRO  生理学研究所, 分子細胞生理研究領域, 教授 (80211887)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2019: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2018: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2017: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
KeywordsATP受容体チャネル / 蛍光非天然アミノ酸 / 動的構造変化 / 生体分子 / イオンチャネル
Outline of Final Research Achievements

ATP receptor channel P2X2 shows voltage-dependent gating, in spite of the absence of canonical voltage-sensor in the molecule. We approached the molecular mechanisms by voltage-clamp fluorometry analysis using unnatural Fluorescent Amino Acid (fUAA). When fUAA was introduced at Ala337 by mutagenesis in the transmembrane domain 2 (TM2), voltage dependent fluorescence change was observed. As the change was linear in the recorded voltage range, it was shown that it is not due to conformational change of P2X2 protein but due to an electrochromic effect of fUAA, and that 337 position is located at a converged electric field. As it is known Phe44 in TM1 is close to Ala337 in the presence of ATP, and as we showed the importance of the interaction between Ala337 and Phe44 for activation by mutagenesis, it was suggested that the interaction between them in the strong electric field is voltage-dependent and that it underlies the voltage-dependent gating of P2X2.

Academic Significance and Societal Importance of the Research Achievements

ATP受容体チャネルP2X2は、典型的な膜電位センサーが無いにも関わらず、未知のメカニズムにより膜電位依存的ゲーティングを示す。本研究では、この根源的な謎にアプローチした。本研究の特徴として、非天然蛍光アミノ酸を分子内に導入し、膜電位固定下で蛍光測光を行い、膜電位依存的構造変化等を捉える革新的な方法論を用いた点があげられる。本研究で得られた知見、および確立した方法論は、今後、膜タンパク質研究に広く敷衍しうる可能性を有する。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (39 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (4 results) Journal Article (10 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 10 results,  Open Access: 3 results) Presentation (25 results) (of which Int'l Joint Research: 13 results,  Invited: 3 results)

  • [Int'l Joint Research] Weizmann Institute of Science(イスラエル)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Sussex University(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of California Berkeley(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] McGill University(カナダ)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Non-sedating antihistamines block G-protein-gated inwardly rectifying K+ channels.2019

    • Author(s)
      Chen IS, Liu C, Tateyama M, Karbat I, Uesugi M, Reuveny E, Kubo Y
    • Journal Title

      Br J Pharmacol

      Volume: 176 Issue: 17 Pages: 3161-3179

    • DOI

      10.1111/bph.14717

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Phosphoinositides modulate the voltage dependence of two-pore channel 32019

    • Author(s)
      Shimomura T, Kubo Y
    • Journal Title

      J Gen Physiol

      Volume: 151 Issue: 8 Pages: 986-1006

    • DOI

      10.1085/jgp.201812285

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Congenital goitrous hypothyroidism is caused by dysfunction of the iodide transporter SLC26A72019

    • Author(s)
      Ishii Jun、Suzuki Atsushi、Kimura Toru、Tateyama Michihiro、Tanaka Tatsushi、Yazawa Takuya、Arimasu Yu、Chen I-Shan、Aoyama Kohei、Kubo Yoshihiro、Saitoh Shinji、Mizuno Haruo、Kamma Hiroshi
    • Journal Title

      Communications Biology

      Volume: 2 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s42003-019-0503-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional properties of axolotl transient receptor potential ankyrin 1 revealed by the heterologous expression system2019

    • Author(s)
      Oda M, Ogino H, Kubo Y, Saitoh O
    • Journal Title

      Neuroreport

      Volume: 30 Issue: 5 Pages: 323-330

    • DOI

      10.1097/wnr.0000000000001197

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] SLO potassium channels antagonize premature decision making in C. elegans2018

    • Author(s)
      Aoki I, Tateyama M, Shimomura T, Ihara K, Kubo Y, Nakano S, Mori I.
    • Journal Title

      Commun Biol.

      Volume: 1 Issue: 1 Pages: 123-123

    • DOI

      10.1038/s42003-018-0124-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gi/o-coupled muscarinic receptors co-localize with GIRK channel for efficient channel activation.2018

    • Author(s)
      Tateyama M, Kubo Y
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 9 Pages: e0204447-e0204447

    • DOI

      10.1371/journal.pone.0204447

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Two mutations at different positions in the CNBH domain of the hERG channel accelerate deactivation and impair the interaction with the EAG domain.2018

    • Author(s)
      Kume S, Shimomura T, Tateyama M, Kubo Y
    • Journal Title

      Journal of Physioloby

      Volume: 596 Issue: 19 Pages: 4629-4650

    • DOI

      10.1113/jp276208

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural properties determining low K+affinity of the selectivity filter in the TWIK1 K+channel2018

    • Author(s)
      Tsukamoto Hisao、Higashi Masahiro、Motoki Hideyoshi、Watanabe Hiroki、Ganser Christian、Nakajo Koichi、Kubo Yoshihiro、Uchihashi Takayuki、Furutani Yuji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Issue: 18 Pages: 6969-6984

    • DOI

      10.1074/jbc.ra118.001817

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ivermectin and its target molecules: shared and unique modulation mechanisms of ion channels and receptors by ivermectin.2018

    • Author(s)
      Chen IS, Kubo Y.
    • Journal Title

      J Physiol

      Volume: 印刷中 Issue: 10 Pages: 1833-1845

    • DOI

      10.1113/jp275236

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ivermectin activates GIRK channels in a PIP2 -dependent, Gβγ-independent manner and an amino acid residue at the slide helix governs the activation.2017

    • Author(s)
      Chen, I.S., Tateyama, M., Fukata, Y., Uesugi, M., & Kubo, Y.
    • Journal Title

      Journal of Physiology

      Volume: 595 Issue: 17 Pages: 5895-5912

    • DOI

      10.1113/jp274871

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] Inhibitory mechanisms of G-protein-gated inwardly rectifying K+ channel by antihistamines2020

    • Author(s)
      Chen IS, Liu C, Tateyama M, Karbat I, Uesugi M, Reuveny E, Kubo Y
    • Organizer
      Biophysical Society 64th Annual Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] PI(3,4)P2-dependent modulation of voltage dependence in Two-Pore Chanel 32020

    • Author(s)
      Shimomura T, Kubo Y
    • Organizer
      Biophysical Society 64th Annual Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Relative voltage sensor activation kinetics determines the effects of sensor neutralization in voltage-gated sodium channels2020

    • Author(s)
      Brake, N, Manchino A, Yan Y, Shimomura T, Kubo Y, Bowie D, Khadra A
    • Organizer
      Biophysical Society 64th Annual Meeting
    • Related Report
      2019 Annual Research Report
  • [Presentation] PI(3,4)P2- and voltage-dependent gating of two-pore Na+ channel 32020

    • Author(s)
      Shimomura T, Hirazawa K, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Chen IS, Kubo Y2020

    • Author(s)
      Roles of the pore helix in the regulation mechanisms of gating of GIRK channels
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analysis of the structural dynamics of Two-pore Na+ channel 32020

    • Author(s)
      Hirazawa K, Shimomura T, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Activation of the THIK-2 channels by Gi/o and Gq coupled receptors2020

    • Author(s)
      Tateyama M, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Physiological roles of Prrt3, an orphan metabotropic receptor: Comprehensive behavioral test battery analysis using homozgous full gene knock-out mice derived from flox mice2020

    • Author(s)
      Yamamoto T, Hattori S, Zhou L, Natsume R, Konno K, Chen IS, Watanabe M, Sakimura K, Miyakawa T, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] ATP- and voltage-dependent gating of P2X2 receptor analyzed by voltage-clamp fluorometry2020

    • Author(s)
      Andriani RT, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Modulation of ion channel function by Sigma-1 receptor, a multimodal membrane protein2020

    • Author(s)
      Liu C, Chen IS, Murrell-Lagnado R, Kubo Y
    • Organizer
      The 97th Annual Meeting of the Physiological Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] ATP-and voltage-dependent gating of P2X2 receptor analyzed by voltage-clamp fluorometry2019

    • Author(s)
      Andriani RT, Kubo Y
    • Organizer
      The 7th International Ion Channel Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phosphoinositides modulate the voltage dependence of Two-Pore Channel 32019

    • Author(s)
      Kubo Y
    • Organizer
      The 7th International Ion Channel Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Phosphoinositides modulate the voltage dependence in Two-Pore Na+ Channel 32019

    • Author(s)
      Kubo Y
    • Organizer
      The Ion Channel Modulation Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A key interaction for modulation of voltage dependence by phosphoinositides in two-pore channel 32019

    • Author(s)
      Shimomura T, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of dynamic structural rearrangements of Two-Pore Na+ Channel 3 by voltage clamp fluorometry2019

    • Author(s)
      Hirazawa K, Shimomura T, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Voltage-clamp fluorometry analyses of voltage-dependent gating of ATP receptor channel P2X22019

    • Author(s)
      Rizki AT, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effects of antihistamine drugs on G-protein-gated inwardly rectifying K+ channels2019

    • Author(s)
      Chang L, Chen IS, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Metabotropic glutamate receptor mGlu2 regulates signaling via Gq-coupled serotonergic receptor2019

    • Author(s)
      Tateyama M, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Regulation mechanisms of G-protein-gated inwardly rectifying K+channel by small molecules2019

    • Author(s)
      Chen IS, Liu C, Kubo Y
    • Organizer
      9th FAOPS congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analyses of the structural rearrangements of P2X2 receptor by voltage-clamp fluorometry using fUAA fluorophore - quencher pairing2018

    • Author(s)
      Andriani RT, Kubo Y
    • Organizer
      第95回日本生理学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Modulation of the voltage dependence by phosphoinositides in Two-Pore Na+ Channel 32018

    • Author(s)
      Shimomura T, Kubo Y
    • Organizer
      第95回日本生理学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Novel regulation mechanisms of the GIRK channel activity by small molecules2018

    • Author(s)
      Chen IS, Kubo Y
    • Organizer
      第95回日本生理学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] FRET analyses of the effect of Phe860Glu mutation on the interaction between the N- and C- terminal cytoplasmic domains in hERG channel2018

    • Author(s)
      Kume S, Tateyama M, Kubo Y
    • Organizer
      第95回日本生理学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Effects and activation mechanisms of ivermectin on G-protein-gated inwardly rectifying potassium channels.2018

    • Author(s)
      Chen IS, Tateyama M, Fukata Y, Uesugi M, Kubo Y
    • Organizer
      62nd Annual Meeting of Biophysical Society
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Activation mechanisms and binding sites of ivermectin in G-protein-gated inwardly rectifying potassium channels2017

    • Author(s)
      Kubo Y
    • Organizer
      IUPS 38th World Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited

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Published: 2017-04-28   Modified: 2021-02-19  

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