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Structural basis of signal transduction mediated by various GPCRs

Research Project

Project/Area Number 17H04999
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Kofuku Yutaka  東京大学, 大学院薬学系研究科(薬学部), 助教 (80737940)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥26,130,000 (Direct Cost: ¥20,100,000、Indirect Cost: ¥6,030,000)
Fiscal Year 2020: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2019: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2018: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2017: ¥7,020,000 (Direct Cost: ¥5,400,000、Indirect Cost: ¥1,620,000)
Keywords核磁気共鳴法 / シグナル伝達 / 膜タンパク質 / Gタンパク質共役型受容体 / 脂質二重膜 / 薬学 / 生物物理 / 蛋白質 / 免疫学 / 構造生物学
Outline of Final Research Achievements

G-protein-coupled receptors (GPCRs) are seven-transmembrane proteins mediating cellular signals in response to extracellular stimuli. Although three-dimensional structures showcase snapshots that can be sampled in the process, the mechanism by which agonist-activated GPCRs interact with various effectors remains elusive. Here, we used nuclear magnetic resonance to visualize the structures of beta2-adrenergic receptor and adenosine A2A receptor. Analyses of efficacy-dependent chemical shifts of beta2-adrenergic receptor identified an equilibrium among three conformations, including one responsible for the varied signal level in each ligand-bound state. The docosahexanoic acid chains in lipid membranes redistribute the multiple conformations of adenosine A2A receptor toward those preferable for G protein binding. These results provide a structural basis for the dynamic activation of GPCRs and shed light on GPCR-mediated signal transduction.

Academic Significance and Societal Importance of the Research Achievements

医薬品の30%以上は、G蛋白質共役型受容体(GPCR)に作用して、シグナル伝達活性を変化させることで、治療効果を発揮する。本研究で得られたGPCRの構造を参考にして、下流のシグナルを伝達する分子との相互作用に、選択的に作用する化合物を作ることができれば、副作用を抑制する薬剤を、合理的に設計できる可能性が示された。また、脂質の作用を模倣することで、生体内に存在する化合物や他の薬剤がすでに結合したGPCRに対しても作用する薬剤設計の道が開け、新たな作用点および薬理作用を持つ医薬品の開発が加速することが期待される。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (19 results)

All 2021 2020 2019 2018 2017 Other

All Int'l Joint Research (1 results) Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 3 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Remarks (1 results)

  • [Int'l Joint Research] ヘルシンキ大学生物工学研(フィンランド)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] GPCRのNMR・ESR解析2021

    • Author(s)
      幸福 裕、今井 駿輔、上田 卓見、嶋田 一夫
    • Journal Title

      細胞

      Volume: 53 Pages: 280-284

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Activation of adenosine A2A receptor by lipids from docosahexaenoic acid revealed by NMR2020

    • Author(s)
      Takuya Mizumura, Keita Kondo, Masatoshi Kurita, Yutaka Kofuku, Mei Natsume, Shunsuke Imai, Yutaro Shiraishi, Takumi Ueda, Ichio Shimada
    • Journal Title

      Science Advances

      Volume: 6 Issue: 12

    • DOI

      10.1126/sciadv.aay8544

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural equilibrium underlying ligand-dependent activation of b2-adrenoreceptor2020

    • Author(s)
      Shunsuke Imai, Tomoki Yokomizo, Yutaka Kofuku, Yutaro Shiraishi, Takumi Ueda, Ichio Shimada
    • Journal Title

      Nature Chemical Biology

      Volume: 16 Issue: 4 Pages: 430-439

    • DOI

      10.1038/s41589-019-0457-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures2018

    • Author(s)
      Shimada Ichio、Ueda Takumi、Kofuku Yutaka、Eddy Matthew T.、Wuthrich Kurt
    • Journal Title

      Nature Reviews Drug Discovery

      Volume: 18 Issue: 1 Pages: 59-82

    • DOI

      10.1038/nrd.2018.180

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Deuteration and Selective Labeling of Alanine Methyl Groups of β 2-Adrenergic Receptor Expressed in a Baculovirus-Insect Cell Expression System2018

    • Author(s)
      Yutaka Kofuku, Tomoki Yokomizo, Shunsuke Imai, Yutaro Shiraishi, Mei Natsume, Hiroaki Itoh, Masayuki Inoue, Kunio Nakata, Shunsuke Igarashi, Hideyuki Yamaguchi, Toshimi Mizukoshi, Ei-Ichiro Suzuki, Takumi Ueda, Ichio Shimada
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 印刷中 Issue: 3 Pages: 185-192

    • DOI

      10.1007/s10858-018-0174-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phosphorylation-induced conformation of β2-adrenoceptor related to arrestin recruitment revealed by NMR2018

    • Author(s)
      Yutaro Shiraishi, Mei Natsume, Yutaka Kofuku, Shunsuke Imai, Kunio Nakata, Toshimi Mizukoshi, Takumi Ueda, Hideo Iwai, Ichio Shimada
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 164-164

    • DOI

      10.1038/s41467-017-02632-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 動的構造平衡に基づいたμオピオイド受容体の活性化機構の解明2021

    • Author(s)
      金子 舜、今井 駿輔、浅尾 信央、幸福 裕、上田 卓見、嶋田 一夫
    • Organizer
      日本薬学会第141年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Dynamics of G protein-coupled receptor related to various signaling revealed by NMR2019

    • Author(s)
      Kofuku Y, Shiraishi Y, Natsume M, Okude J, Sato M, Imai S, Kondo K, Mizumura T, Maeda M, Tsujishita H, Kuranaga T, Inoue M, Nakata K, Mizukoshi T, Ueda T, Iwai H, Shimada I
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 区分同位体標識を用いたβ2アドレナリン受容体のリン酸化によるシグナル制御機構の解明2018

    • Author(s)
      白石 勇太郎、夏目 芽依、幸福 裕、今井 駿輔、中田 國夫、水越 利巳、上田 卓見、岩井 秀夫、嶋田 一夫
    • Organizer
      第91回生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] β2アドレナリン受容体のリン酸化によるシグナル制御機構の解明2018

    • Author(s)
      夏目 芽依、白石 勇太郎、幸福 裕、今井 駿輔、中田 國夫、水越 利巳、上田 卓見、岩井 秀夫、嶋田 一夫
    • Organizer
      第91回生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Phosphorylation-induced conformation of β2-adrenoceptor related to arrestin recruitment revealed by NMR2018

    • Author(s)
      Yutaro Shiraishi, Mei Natsume, Yutaka Kofuku, Shunsuke Imai, Kunio Nakata, Toshimi Mizukoshi, Takumi Ueda, Hideo Iwai and Ichio Shimada
    • Organizer
      XXVIII International Conference on Magnetic Resonance in Biological Systems
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Deuteration and selective labeling of alanine methyl groups of β2-adrenergic receptor expressed in a baculovirus-insect cell expression system2018

    • Author(s)
      Yutaka Kofuku, Tomoki Yokomizo, Shunsuke Imai, Yutaro Shiraishi, Mei Natsume, Hiroaki Itoh, Masayuki Inoue, Kunio Nakata, Shunsuke Igarashi, Hideyuki Yamaguchi, Toshimi Mizukoshi, Ei-Ichiro Suzuki, Takumi Ueda and Ichio Shimada
    • Organizer
      XXVIII International Conference on Magnetic Resonance in Biological Systems
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 昆虫細胞発現系におけるアラニン選択的安定同位体標識法の開発と脂質二重膜中のβ2-アドレナリン受容体への応用2018

    • Author(s)
      中田國夫、五十嵐俊介、幸福裕、上田卓見、白石勇太郎、夏目芽依、横溝智貴、今井俊輔、水越利巳、鈴木榮一郎、嶋田一夫
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] アラニン側鎖メチル基を観測対象としたβ2-アドレナリン受容体のシグナル伝達機構の解明2018

    • Author(s)
      横溝智貴、今井俊輔、幸福裕、上田卓見、白石勇太郎、夏目芽依、中田國夫、五十嵐俊介、水越利巳、鈴木榮一郎、嶋田一夫
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] β2アドレナリン受容体のリン酸化によるシグナル制御機構の解明2018

    • Author(s)
      夏目芽依、白石勇太郎、幸福裕、今井駿輔、中田國夫、水越利巳、上田卓見、岩井秀夫、嶋田一夫
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 区分同位体標識を用いたβ2アドレナリン受容体のリン酸化によるシグナル制御機構の解明2018

    • Author(s)
      白石勇太郎、夏目芽依、幸福裕、今井駿輔、中田國夫、水越利巳、上田卓見、岩井秀夫、嶋田一夫
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 動的構造に着目したGタンパク質共役型受容体の機能解明2017

    • Author(s)
      幸福裕、上田卓見、嶋田一夫
    • Organizer
      第61回日本薬学会関東支部大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Remarks] 東京大学大学院薬学系研究科生命物理化学教室ホームページ

    • URL

      http://ishimada.f.u-tokyo.ac.jp/public_html/index_j.html

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report 2018 Annual Research Report 2017 Annual Research Report

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Published: 2017-04-28   Modified: 2022-01-27  

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