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Regulatory mechanisms and physiological roles of programmed cell death in pith parenchyma of Gramineae crops

Research Project

Project/Area Number 17H05019
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Science in genetics and breeding
Research InstitutionThe University of Tokyo

Principal Investigator

Fujimoto Masaru  東京大学, 大学院農学生命科学研究科(農学部), 准教授 (60554475)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥24,830,000 (Direct Cost: ¥19,100,000、Indirect Cost: ¥5,730,000)
Fiscal Year 2019: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2018: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2017: ¥12,090,000 (Direct Cost: ¥9,300,000、Indirect Cost: ¥2,790,000)
Keywordsイネ科作物 / ソルガム / 茎柔組織 / プログラム細胞死 / マスター転写因子 / イネ科 / 転写因子 / イネ / 柔組織 / 細胞死 / 育種学
Outline of Final Research Achievements

Pith parenchyma cells store water in many plants. These cells are important for producing sugar and ethanol from the sugar juice of grass stems. In this study, we identified a gene, long referred to as D, in a promising energy grass, Sorghum bicolor, that is responsible for reducing stem water content. Sorghum varieties with functional D had stems enriched with dry, dead pith parenchyma cells, whereas those with non-functional D had stems enriched with juicy, living pith parenchyma cells. D encodes a NAC transcription factor, which activates the autolytic enzymes involved in programmed cell death of plants. These results suggest that D is the master transcriptional switch for executing programmed death of pith parenchyma cells in sorghum stems. Thus, identifying D will provide a new approach to breeding crops for sugar and ethanol production.

Academic Significance and Societal Importance of the Research Achievements

製糖・エネルギー作物における茎水分含量の増大は,糖やエタノール生産の原料に用いる茎搾汁液の生産量や生産効率の向上につながります.本研究の成果は,乾汁性決定遺伝子機能の調節を標的とした,糖やエタノール生産用作物の効率的な品種改良や,新たな資源作物開発への道を拓くものとして期待されます.また,茎柔組織の大規模なプログラム細胞死は,イネ科作物のみならず,広範の植物種で観察される現象であり,本研究の成果は,未だ不明な点の多い,その生理的意義や制御機構の理解に大きく貢献するものです。

Report

(4 results)
  • 2020 Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (12 results)

All 2021 2020 2019 2018 Other

All Journal Article (10 results) (of which Peer Reviewed: 8 results,  Open Access: 5 results) Presentation (1 results) Remarks (1 results)

  • [Journal Article] FMT, a protein that affects mitochondrial distribution, interacts with translation-related proteins in Arabidopsis thaliana2021

    • Author(s)
      Ayabe Hiroki、Kawai Narumi、Shibamura Mitsuhiro、Fukao Yoichiro、Fujimoto Masaru、Tsutsumi Nobuhiro、Arimura Shin-ichi
    • Journal Title

      Plant Cell Reports

      Volume: 40 Issue: 2 Pages: 327-337

    • DOI

      10.1007/s00299-020-02634-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dissecting the Genetic Architecture of Biofuel-related Traits in a Sorghum Breeding Population2020

    • Author(s)
      Ishimori M, Takanashi H, Hamazaki K, Atagi Y, Kajiya-Kanegae H, Fujimoto M, Yoneda J, Tokunaga T, Tsutsumi N, Iwata H
    • Journal Title

      G3

      Volume: 10 Issue: 12 Pages: 4565-4577

    • DOI

      10.1534/g3.120.401582

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Impacts of dominance effects on genomic prediction of sorghum hybrid performance2020

    • Author(s)
      Ishimori M, Hattori T, Yamazaki K, Takanashi H, Fujimoto M, Kajiya-Kanegae H, Yoneda J, Tokunaga T, Fujiwara T, Tsutsumi N, Iwata H.
    • Journal Title

      Breeding Science

      Volume: 70 Issue: 5 Pages: 605-616

    • DOI

      10.1270/jsbbs.20042

    • NAID

      130007962583

    • ISSN
      1344-7610, 1347-3735
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis2020

    • Author(s)
      Fujimoto Masaru、Ebine Kazuo、Nishimura Kohji、Tsutsumi Nobuhiro、Ueda Takashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Issue: 40 Pages: 25150-25158

    • DOI

      10.1073/pnas.2011152117

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RAD-seq-Based High-Density Linkage Map Construction and QTL Mapping of Biomass-Related Traits in Sorghum using the Japanese Landrace Takakibi NOG.2020

    • Author(s)
      Kajiya-Kanegae H, Takanashi H, Fujimoto M, Ishimori M, Ohnishi N, Wacera W F, Omollo EA, Kobayashi M, Yano K, Nakano M, Kozuka T, Kusaba M, Iwata H, Tsutsumi N, Sakamoto W
    • Journal Title

      Plant Cell Physiol.

      Volume: 61 Issue: 7 Pages: 1262-1272

    • DOI

      10.1093/pcp/pcaa056

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of salt tolerance on biomass production in a large population of sorghum accessions2020

    • Author(s)
      Yamazaki Kiyoshi、Ishimori Motoyuki、Kajiya-Kanegae Hiromi、Takanashi Hideki、Fujimoto Masaru、Yoneda Jun-ichi、Yano Kentaro、Koshiba Taichi、Tanaka Ryokei、Iwata Hiroyoshi、Tokunaga Tsuyoshi、Tsutsumi Nobuhiro、Fujiwara Toru
    • Journal Title

      Breeding Science

      Volume: 70 Issue: 2 Pages: 167-175

    • DOI

      10.1270/jsbbs.19009

    • NAID

      130007833812

    • ISSN
      1344-7610, 1347-3735
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular mechanisms for pith cell death of sorghum stems2019

    • Author(s)
      藤本 優, 米丸 淳一, 堤 伸浩
    • Journal Title

      Regulation of Plant Growth & Development

      Volume: 54 Issue: 1 Pages: 66-70

    • DOI

      10.18978/jscrp.54.1_66

    • NAID

      130007668424

    • ISSN
      1346-5406, 2189-6305
    • Related Report
      2018 Annual Research Report
  • [Journal Article] Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana2019

    • Author(s)
      Shimada Takashi L、Betsuyaku Shigeyuki、Inada Noriko、Ebine Kazuo、Fujimoto Masaru、Uemura Tomohiro、Takano Yoshitaka、Fukuda Hiroo、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Issue: 7 Pages: 1514-1524

    • DOI

      10.1093/pcp/pcz058

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ソルガムの茎糖液含量を規定する遺伝子2019

    • Author(s)
      藤本 優,佐塚隆志,米丸淳一,堤 伸浩
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 77 Pages: 112-115

    • NAID

      40021840498

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Transcriptional switch for programmed cell death in pith parenchyma of sorghum stems.2018

    • Author(s)
      Fujimoto M, Sazuka T, Oda Y, Kawahigashi H, Wu J, Takanashi H, Ohnishi T, Yoneda JI, Ishimori M, Kajiya-Kanegae H, Hibara KI, Ishizuna F, Ebine K, Ueda T, Tokunaga T, Iwata H, Matsumoto T, Kasuga S, Yonemaru JI, Tsutsumi N
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 115 Issue: 37

    • DOI

      10.1073/pnas.1807501115

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 遺伝子型×環境交互作用モデルによるソルガムのゲノミック予測2020

    • Author(s)
      石森元幸, 山﨑清志, 高梨秀樹, 鐘ヶ江弘 美, 藤本優, 米田淳一, 徳永毅, 藤原徹, 堤伸浩, 岩田洋佳
    • Organizer
      日本育種学会・第137回講演会
    • Related Report
      2018 Annual Research Report
  • [Remarks] ソルガムにおける乾汁性決定遺伝子の発見~糖やエタノールの生産性向上に関わる100年来の謎を解明~

    • URL

      https://www.a.u-tokyo.ac.jp/topics/2018/20180828-1.html

    • Related Report
      2017 Annual Research Report

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Published: 2017-04-28   Modified: 2022-01-27  

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