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Structural dynamics of K+ channel imaged by high-speed atomic force microscopy

Research Project

Project/Area Number 17H05058
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field General physiology
Research InstitutionKanazawa University

Principal Investigator

Sumino Ayumi  金沢大学, ナノ生命科学研究所, 助教 (80717140)

Project Period (FY) 2017-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥24,440,000 (Direct Cost: ¥18,800,000、Indirect Cost: ¥5,640,000)
Fiscal Year 2020: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2019: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥11,570,000 (Direct Cost: ¥8,900,000、Indirect Cost: ¥2,670,000)
Keywordsイオンチャネル / 高速原子間力顕微鏡 / 電位依存性チャネル / 脂質膜 / 原子間力顕微鏡 / チャネル / 生体膜
Outline of Final Research Achievements

The plan was to develop a simultaneous tip-scanning high-speed AFM and electrophysiology measurement system to observe the nanostructure and function of channels, but the fabricated tip-scanning high-speed AFM did not work stably. Therefore, we changed our plan and replaced the tip-scanning high-speed AFM with a sample-scanning high-speed AFM with stable operation. When the voltage-gated Na+ channels in lipid membranes were measured with the sample-scanning high-speed AFM, a pore domain (PD) structure was observed, in which four particles were assembled in a square shape. Surrounding them are smaller particles closely packed, which are considered to be voltage sensor domains (VSDs). In mutants with altered voltage dependence, VSD-like particles dissociate from the PD, revealing an association and dissociation of intramolecular motifs related to voltage dependence.

Academic Significance and Societal Importance of the Research Achievements

電位依存性チャネルは生理機能の維持に欠かせない重要な分子群であるが、その電位依存的な開閉の際の構造変化は不明点が多い。本研究は脂質膜中における電位センサードメインとポアドメインの位置関係を一分子レベルで直接観察した初の結果であり、電位依存的開閉機構の完全解明に向けて重要な知見となった。

Report

(5 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report

Research Products

(15 results)

All 2021 2019 2017

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 6 results) Presentation (9 results) (of which Invited: 5 results)

  • [Journal Article] Antibacterial Activity of Membrane-Permeabilizing Bactericidal Cyclodextrin Derivatives2021

    • Author(s)
      H. Yamamura, T. Hagiwara, Y. Hayashi, K. Ogawa, H. Kato T. Katsu K. Masuda A. Sumino H. Yamashita R. Jinno M. Abe A. Miyagawa
    • Journal Title

      ACS Omega

      Volume: 6(47) Pages: 31831-31842

    • DOI

      10.1021/acsomega.1c04541

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Macrocyclic Peptide-Conjugated Tip for Fast and Selective Molecular Recognition Imaging by High-Speed Atomic Force Microscopy2021

    • Author(s)
      L. Pupplin, D. Kanayama, N. Terasaka, K. Sakai, N. Kodera, K. Umeda, A. Sumino, M. Arin, W. Wei, H. Tanaka, T. Fukuma, H. Suga, K. Matsumoto, M. Shibata
    • Journal Title

      ACS Appl. Mater. Interfaces

      Volume: 13(46) Pages: 54817-54829

    • DOI

      10.1021/acsami.1c17708

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Visualisation of helical structures of poly(diphenylacetylene)s bearing chiral amide pendants by atomic force microscopy2021

    • Author(s)
      A. Yurtsever, S. Das, T. Nishimura, R. Rodriguez, D. Hirose, K. Miyata, A. Sumino, T. Fukuma, K. Maeda
    • Journal Title

      Chemical Communications

      Volume: 57(92) Pages: 12266-12269

    • DOI

      10.1039/d1cc05341h

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Essential Requirements of Biocompatible Cellulose Solvents2021

    • Author(s)
      T. Komori, H. Satria, K. Miyamura, A. Ito, M. Kamiya, A. Sumino, T. Onshi, K. Ninomiya, K. Takahashi, J. Anderson, T. Uto, K. Kuroda
    • Journal Title

      ACS Sustainable Chemistry & Engineering

      Volume: 9(35) Pages: 11825-11836

    • DOI

      10.1021/acssuschemeng.1c03438

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] High-speed AFM reveals accelerated binding of agitoxin-2 to a K+ channel by induced fit2019

    • Author(s)
      A. Sumino,T. Sumikama,T. Uchihashi,S. Oiki
    • Journal Title

      Science Advances

      Volume: 5 Pages: 1-10

    • DOI

      10.1126/sciadv.aax0495

    • NAID

      120006649788

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Channel Formation and Membrane Deformation via Sterol-Aided Polymorphism of Amphidinol 32017

    • Author(s)
      Iwamoto M, Sumino A, Shimada E, Kinoshita M, Matsumori N, Oiki S
    • Journal Title

      Sci. Rep.

      Volume: 7 Pages: 10782-10782

    • DOI

      10.1038/s41598-017-11135-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Structural Dynamics of The Cytoplasmic Domain of Transient Receptor Potential Vanilloid1(TRPV1) in Lipid Bilayer Observed by High Speed Atomic Force Microscopy (HS-AFM)2021

    • Author(s)
      D. Mukai, Y. Zhao, M. Shibata, M. Hattori, A. Sumino
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 高速原子間力顕微鏡による膜中TRPV1 チャネルの動態観察2021

    • Author(s)
      向 大地, Yimeng Zhao, 柴田 幹大, 服部 素之, 角野 歩
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 高速AFMによるサソリ毒ペプチドが効率的にK+ チャネルを阻害する仕組みの解明2019

    • Author(s)
      角野 歩, 炭竈 享司, 内橋 貴之, 老木 成稔
    • Organizer
      第42回日本分子生物学会年会 ワークショップ
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 高速AFMによる膜関連分子の動態観察2019

    • Author(s)
      角野 歩
    • Organizer
      第42回日本分子生物学会年会 フォーラム(チュートリアル企画
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] High-speed AFM reveals ligand binding dynamics on membrane proteins: accelerated binding of agitoxin-2 to a K+ channel by induced fit2019

    • Author(s)
      Ayumi Sumino
    • Organizer
      TRENDS IN MOLECULAR BIOPHYSICS OF LIVING CELLS
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 高速原子間力顕微鏡によるハブ毒液由来ホスホリパーゼA2の脂質膜分解動態の観察2019

    • Author(s)
      角野 歩, 神谷 孫斗, 上田 直子
    • Organizer
      第66回トキシンシンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] Studying ion channels in reconstituted membrane using atomic force microscopy2019

    • Author(s)
      角野 歩、炭竈 享司、内橋 貴之、老木 成稔
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 高速AFMによるサソリ毒ペプチドとK+チャネルの結合動態解析2019

    • Author(s)
      角野 歩
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 原子間力顕微鏡のイオンチャネル研究への応用2019

    • Author(s)
      角野 歩
    • Organizer
      第3回イオンチャネル研究会
    • Related Report
      2018 Annual Research Report

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Published: 2017-04-28   Modified: 2023-01-30  

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