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Hologenome analyses of microbiota in periodontitis and peri-implantitis

Research Project

Project/Area Number 17H06662
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Periodontology
Research InstitutionTokyo Medical and Dental University

Principal Investigator

Shiba Takhiko  東京医科歯科大学, 歯学部附属病院, 特任助教 (90802306)

Research Collaborator TAKEUCHI yasuo  
WATANABE takayasu  
KOYANAGI tatsuro  
Project Period (FY) 2017-08-25 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords歯周炎 / インプラント周囲炎 / メタゲノム解析 / 次世代シーケンサー / ネットワーク解析 / 複合感染症 / Dysbiosis / メタ16S解析 / 細菌叢 / ホロゲノム / メタトランスクリプトーム / メタトランスクリプトーム解析 / 次世代シークエンサー / スーパーコンピューター / 歯学 / 細菌 / 微生物 / ゲノム
Outline of Final Research Achievements

Plaque samples were obtained from the site of peri-implantitis and periodontitis in the same oral cavity. Genomic information of the bacteria from the sites was comprehensively analyzed. These analysis results were compared and we clarified the causes of difference between the two diseases.
DNA was extracted from the samples. Metagenomic analysis was performed to analyze whole genome information and meta 16S rDNA analysis was performed to specify the bacterial species. The results were integrated and the network analysis was performed.
The profiles of bacterial species were similar in the two diseases.However, the core network structures, the bacterial species that form the core network structure, and the functional composition of the microbiome were different in both diseases.

Academic Significance and Societal Importance of the Research Achievements

インプラント周囲炎は歯周炎と類似した臨床症状を呈するが、インプラント周囲炎は歯周炎に比べ罹患率が高い。加えて、歯周炎では有効な治療効果が得られた方法を駆使しても必ずしも良好な結果が得られないことが報告されている。歯周炎は様々な全身疾患との関連が考えられており、インプラント周囲炎に関与する細菌もまた全身の健康に影響を与えると推測される。本研究により疾患特異的な代謝状態、具体的な病原細菌叢のもつ機能を評価し、治療の標的となる細菌種、機能遺伝子を特定し新規予防・治療法の開発を行う。インプラント周囲炎原因の究明と新規治療法開発は喫緊の課題であり、本研究は国民の今後のQOL向上に寄与すると考えられる。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • Research Products

    (20 results)

All 2019 2018 2017 Other

All Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 6 results,  Open Access: 5 results) Presentation (10 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Deep sequencing reveals specific bacterial signatures in the subgingival microbiota of healthy subjects2019

    • Author(s)
      Ikeda Eri、Shiba Takahiko、Ikeda Yuichi、Suda Wataru、Nakasato Akinori、Takeuchi Yasuo、Azuma Miyuki、Hattori Masahira、Izumi Yuichi
    • Journal Title

      Clinical Oral Investigations

      Volume: 23 Issue: 3 Pages: 1489-1493

    • DOI

      10.1007/s00784-019-02805-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional dysbiosis within dental plaque microbiota in cleft lip and palate patients2019

    • Author(s)
      Funahashi Kenta、Shiba Takahiko、Watanabe Takayasu、Muramoto Keiko、Takeuchi Yasuo、Ogawa Takuya、Izumi Yuichi、Sekizaki Tsutomu、Nakagawa Ichiro、Moriyama Keiji
    • Journal Title

      Progress in Orthodontics

      Volume: 20 Issue: 1 Pages: 11-11

    • DOI

      10.1186/s40510-019-0265-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Influence of Porphyromonas gingivalis in gut microbiota of streptozotocin-induced diabetic mice2019

    • Author(s)
      Ohtsu Anri、Takeuchi Yasuo、Katagiri Sayaka、Suda Wataru、Maekawa Shogo、Shiba Takahiko、Komazaki Rina、Udagawa Sayuri、Sasaki Naoki、Hattori Masahira、Izumi Yuichi
    • Journal Title

      Oral Diseases

      Volume: 25(3) Issue: 3 Pages: 868-880

    • DOI

      10.1111/odi.13044

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Endotoxemia by Porphyromonas gingivalis Injection Aggravates Non-alcoholic Fatty Liver Disease, Disrupts Glucose/Lipid Metabolism, and Alters Gut Microbiota in Mice2018

    • Author(s)
      Sasaki Naoki、Katagiri Sayaka、Komazaki Rina、Watanabe Kazuki、Maekawa Shogo、Shiba Takahiko、Udagawa Sayuri、Takeuchi Yasuo、Ohtsu Anri、Kohda Takashi、Tohara Haruka、Miyasaka Naoyuki、Hirota Tomomitsu、Tamari Mayumi、Izumi Yuichi
    • Journal Title

      Frontiers in Microbiology

      Volume: 9 Pages: 2470-2470

    • DOI

      10.3389/fmicb.2018.02470

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Effect of Porphyromonas gingivalis infection in the placenta and umbilical cord in pregnant mice with low birth weight2018

    • Author(s)
      Udagawa Sayuri、Katagiri Sayaka、Maekawa Shogo、Takeuchi Yasuo、Komazaki Rina、Ohtsu Anri、Sasaki Naoki、Shiba Takahiko、Watanabe Kazuki、Ishihara Kazuyuki、Sato Noriko、Miyasaka Naoyuki、Izumi Yuichi
    • Journal Title

      Acta Odontologica Scandinavica

      Volume: 15 Issue: 6 Pages: 1-9

    • DOI

      10.1080/00016357.2018.1426876

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Periodontal pathogenic bacteria, Aggregatibacter actinomycetemcomitans affect non-alcoholic fatty liver disease by altering gut microbiota and glucose metabolism2017

    • Author(s)
      Komazaki Rina、Katagiri Sayaka、Takahashi Hirokazu、Maekawa Shogo、Shiba Takahiko、Takeuchi Yasuo、Kitajima Yoichiro、Ohtsu Anri、Udagawa Sayuri、Sasaki Naoki、Watanabe Kazuki、Sato Noriko、Miyasaka Naoyuki、Eguchi Yuichiro、Anzai Keizo、Izumi Yuichi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 13950-13950

    • DOI

      10.1038/s41598-017-14260-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 網羅的な細菌叢解析による歯周炎とインプラント周囲炎の菌叢構造比較2019

    • Author(s)
      駒津匡二,芝 多佳彦,渡辺孝康,小柳達郎,根本 昂,佐藤博紀.前川祥吾,片桐さやか,竹内康雄,岩田隆紀
    • Organizer
      第150回日本歯科保存学会
    • Related Report
      2018 Annual Research Report
  • [Presentation] インプラント周囲炎細菌叢データにおける歯周病原細菌 CRISPR の免疫対象検索2019

    • Author(s)
      渡辺孝康,芝 多佳彦,中野善夫
    • Organizer
      第92回日本細菌学会総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Evaluation of core microbiome and clinical approach in peri-implantitis2019

    • Author(s)
      芝 多佳彦
    • Organizer
      Dentiste Expo 2019 Paris
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] オミックス解析による口腔内複合感染症の病因および病態機序の解明.2018

    • Author(s)
      芝 多佳彦, 竹内康雄, 片桐さやか, 駒津匡二, 小柳達郎, 根本 昂, 青木 章
    • Organizer
      第83回 口腔病学会学術大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] The clinical application of the novel diagnosis and treatment flowchart for peri-implantitis: Part 1 clinical application to mild case.2018

    • Author(s)
      芝 多佳彦,髙木 徹,小柳達郎,谷口陽一,前川祥吾,澤田幸作,片桐さやか,竹内康雄,青木 章,和泉雄一
    • Organizer
      EuroPerio9
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The clinical application of a novel diagnosis and treatment flowchart for peri-implantitis: Part 2 - application to moderate cases.2018

    • Author(s)
      小柳達郎,谷口陽一,髙木 徹,芝多佳彦,,澤田幸作,竹内康雄,青木 章,和泉雄一
    • Organizer
      EuroPerio9
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The clinical application of the novel diagnosis and treatment flowchart for peri-implantitis: Part 3 clinical application on severe case.2018

    • Author(s)
      谷口陽一,小柳達郎,澤田幸作,芝 多佳彦,髙木 徹,青木 章,竹内康雄,山田 梓,和泉雄一
    • Organizer
      EuroPerio9
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] インプラント周囲炎は歯周炎と同じか? ~細菌学的検討~2018

    • Author(s)
      和泉雄一, 芝多佳彦, 竹内康雄
    • Organizer
      臨床歯周病学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] インプラント周囲炎と歯周炎の原因菌をめぐって2017

    • Author(s)
      芝多佳彦, 竹内康雄, 和泉雄一
    • Organizer
      日本歯科医師会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 口唇口蓋裂におけるデンタルプラーク細菌叢のメタトランスクリプトーム解析2017

    • Author(s)
      舩橋健太,渡辺孝康,芝多佳彦,村本慶子,小川卓也,竹内康雄,和泉雄一,森山啓司
    • Organizer
      歯科基礎医学会
    • Related Report
      2017 Annual Research Report
  • [Book] 歯科衛生士の力でここまでできる 非外科的歯周治療2018

    • Author(s)
      Marisa Roncati (原著), 青木 章, 竹内康雄, 秋月達也, 水谷幸嗣, 片桐さやか, 池田裕一, 妻沼有香, 前 川祥吾, 芝 多佳彦, 永田瑞, 佐藤博紀, 大津杏里, 松浦孝典, 三上理沙子, 大川敏生, 小野晴彦, 金子潤平, 関根 聡, 土岡弘明, 平山富興
    • Total Pages
      352
    • Publisher
      クインテッセンス出版
    • ISBN
      4781206093
    • Related Report
      2018 Annual Research Report
  • [Book] 聞くに聞けない歯周病治療1002018

    • Author(s)
      小方頼昌, 若松尚吾, 江尻健一郎, 岡田祐輔, 高塩智子, 斎田寛之, 鎌田征之, 梅田 誠, 申 基喆, 酒井和人, 富田幸代, 齋藤 淳, 色川大輔, 鈴木瑛一, 石川 聡, 芝 多佳彦, 澤辺正規, 佐藤末奈子, 熱田 亙, 山脇史寛, 川名部大, 鈴木浩之, 林 直 也, 沼部幸博, 下條美穂子, 大八木孝昌, 土岡弘明, 村井治, 八重柏隆, 澁谷俊昭
    • Total Pages
      174
    • Publisher
      デンタルダイヤモンド社
    • ISBN
      4885103983
    • Related Report
      2018 Annual Research Report
  • [Book] 歯科医師・歯科衛生士のためのClinical Handbook2018

    • Author(s)
      Paul A. Levi, 木下淳博, 長澤敏行, 青木 章, 小林宏明, 竹内康雄, 秋月達也, 水谷幸嗣, 片桐さやか, 池田裕一, 妻沼有香, 前川祥吾, 芝 多 佳彦, 須藤 毅顕, 永田 瑞, 星 嵩, 城戸大輔, 佐藤博紀, 大津杏里, 柿崎 翔, 池田恵莉, 駒崎利奈, 須藤明日香, 丸山緑子, 野田昌宏, 松浦孝典, 三上理沙子, 矢野孝星, 宇田川小百合, 坪川正樹, 高木 徹
    • Total Pages
      220
    • Publisher
      医歯薬出版
    • ISBN
      4263445287
    • Related Report
      2018 Annual Research Report
  • [Remarks] 東京医科歯科大学研究情報データベース

    • URL

      http://reins.tmd.ac.jp/html/100011966_ja.html

    • Related Report
      2018 Annual Research Report

URL: 

Published: 2017-08-25   Modified: 2020-03-30  

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