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Development of molecular detection method for heterotrophic nitrifying bacteria using pod as the target gene and its application to the environmental dynamics analysis

Research Project

Project/Area Number 17K00517
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Environmental dynamic analysis
Research InstitutionShizuoka University

Principal Investigator

Fujiwara Taketomo  静岡大学, 創造科学技術大学院, 教授 (80209121)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords硝化 / 窒素サイクル / 土壌 / 微生物 / 従属栄養性硝化 / POD / 子嚢菌 / 従属栄養硝化 / 細菌 / 土壌微生物 / 窒素循環 / 環境動態
Outline of Final Research Achievements

Pyruvic oxime dioxygenase (POD) is a key enzyme participating in a heterotrophic nitrification. Using designed specific primers, we attempted PCR amplification of the POD gene using environmental DNA collected from various kinds of soil. All the products obtained were POD genes from Beauveria bassiana, a eukaryotic microorganism of the phylum Ascomycota. Further we conducted biochemical analysis of the recombinant of B. bassiana POD, and the cultivation experiments using the isolate of B. bassiana. Those results indicate that B. bassiana may be significantly involved in heterotrophic nitrification which is highly active especially in the acidic forest soils.

Academic Significance and Societal Importance of the Research Achievements

降水量が多く森林に富む日本は、酸性土壌に広く覆われている。酸性土壌における硝化作用は従属栄養性の微生物の寄与が大きいことが知られている。ところが独立栄養性硝化の分子機構や微生物生態がよく理解されているのに対して、従属栄養性硝化に関してはほとんど不明なまま残されている。本研究によって、従属栄養性硝化微生物に関する生態学的な評価や生化学的分析が可能となった。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (14 results)

All 2019 2018 2017 Other

All Int'l Joint Research (1 results) Journal Article (3 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (9 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (1 results)

  • [Int'l Joint Research] Florida Gulf Coast University(米国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] Draft Genome Sequence of Nitrosococcus oceani Strain NS58, a Marine Ammonia-Oxidizing Gammaproteobacterium Isolated from Tokyo Bay Sediment2019

    • Author(s)
      Dohra H, Arai K, Urakawa H, Fujiwara T
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 35 Pages: 1-3

    • DOI

      10.1128/mra.00923-19

    • NAID

      120006727110

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Glycerol Enhances Growth and Antimicrobial Properties of Two Selected Vibrio Bacteria Associated with the Coral Montipora digitata.2018

    • Author(s)
      Nguyen DT, Casareto BE, Ramphul C, Toyoda K, Suzuki T, Fujiwara T and Suzuki Y
    • Journal Title

      Research Journal of Microbiology

      Volume: 13 Issue: 3 Pages: 127-137

    • DOI

      10.3923/jm.2018.127.137

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Growth phenotype analysis of heme synthetic enzymes in a halophilic archaeon, Haloferax volcanii.2017

    • Author(s)
      Kosugi N, Araki T, Fujita J, Tanaka S, Fujiwara T.
    • Journal Title

      PLoS One

      Volume: 12(12) Issue: 12 Pages: e0189913-e0189913

    • DOI

      10.1371/journal.pone.0189913

    • NAID

      120006606186

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 子嚢菌による従属栄養硝化2019

    • Author(s)
      金田悠太郎、藤原健智
    • Organizer
      2019年度日本土壌微生物学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 海洋性硝化細菌によるN2O生成の酸性化への応答2019

    • Author(s)
      豊田栄、松井智哉、藤原健智、吉田尚弘
    • Organizer
      2019年度日本地球化学会第66回年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Characterization of the bacterial consortium associated with massive corals2019

    • Author(s)
      Fujiwara T
    • Organizer
      “Winners and losers on coral reefs on the wake of climate change”. University of Mauritius, Rep. Mauritius, March 15, 2019
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 高度好塩性アーキアHaloferax volcaniiにおけるヘム生合成経路の分析2018

    • Author(s)
      藤原健智、荒木琢磨、小杉直樹、小柳勇、田中達、藤田純平
    • Organizer
      第19回極限環境生物学会2018年度大会(2018年12月8日~9日、くにびきメッセ・ 島根県松江市)
    • Related Report
      2018 Research-status Report
  • [Presentation] 好塩性アーキアの嫌気呼吸系を制御する転写因子群の網羅的機能解析2018

    • Author(s)
      小栁勇、藤原健智
    • Organizer
      第19回極限環境生物学会2018年度大会(2018年12月8日~9日、くにびきメッセ・ 島根県松江市)
    • Related Report
      2018 Research-status Report
  • [Presentation] 従属栄養硝化の鍵酵素であるPOD (pyruvic oxime dioxygenase) の分子的および生化学的性質2017

    • Author(s)
      辻野修平、上松千紗都、道羅英夫、藤原健智
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Research-status Report
  • [Presentation] 好塩性アーキアにおける嫌気的呼吸の発現制御メカニズムの網羅的解析2017

    • Author(s)
      小柳勇、藤原健智
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Research-status Report
  • [Presentation] Growth phenotype analysis of heme synthetic enzymes in a halophilic archaeon, Haloferax volcanii2017

    • Author(s)
      荒木琢磨、小杉直樹、藤田純平、田中達、藤原健智
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Research-status Report
  • [Presentation] 様々な従属栄養性硝化菌に存在するピルビン酸オキシム酸素添加酵素の分子的性質の比較2017

    • Author(s)
      東祐一、辻野修平、清水遼、金田悠太郎、藤原健智
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Research-status Report
  • [Remarks] 静岡大学理学部生物科学科藤原研究室HP

    • URL

      http://www.ipc.shizuoka.ac.jp/~sbtfuji/TF-lab-J.html

    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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