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Development of quantitative analysis method for biofilm using DNA and RNA information, which is applied to evaluation of infection diseases about medical materials.

Research Project

Project/Area Number 17K01442
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Medical engineering assessment
Research InstitutionSuzuka National College of Technology

Principal Investigator

Ogawa Akiko  鈴鹿工業高等専門学校, 生物応用化学科, 准教授 (90455139)

Project Period (FY) 2017-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2019: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsバイオフィルム / 定量法 / 遺伝子発現 / マイクロアレイ法 / RNA-seq法 / 定量 / マイクロアレイ / RNA-seq / 遺伝子発現解析 / 大腸菌 / 表皮ブドウ球菌 / RNA / 微生物 / 医療機器
Outline of Final Research Achievements

Biofilm formation in body-inserted medical devices is a major cause of chronic infections. As a preventive measure, it would be beneficial to provide materials with a biofilm prevention function, and it would be extremely helpful to have a quantitative evaluation of this function. In this study, we endeavored to construct a biofilm quantification method using gene expression changes associated with bacterial biofilm formation as an indicator. We also sought to comprehensively compare RNA expression levels between the suspended state and the biofilm-forming state using the E. coli K-12 strain as a model bacterium. Our findings suggest that gene expression changes may be useful for biofilm quantification. Moreover, we observed that not only genes involved in biofilm formation but also those involved in sugar, amino acid, and nitrogen metabolism are effective.

Academic Significance and Societal Importance of the Research Achievements

カテーテルなどの体内挿入型医療器具上では、バイオフィルム形成に端を発する感染症が生じやすい。バイオフィルムは細菌と細胞外高分子基質で構成された膜であり、抗生物質耐性をもつ。そこで、医療器具にバイオフィルム形成抑制効果を付与が大切であり、その効果を定量的に評価する必要がある。本研究では、バイオフィルム定量法としてバイオフィルム形成に伴う細菌の遺伝子発現の変動を利用してきた。本法は医療器具の種類に依らずバイオフィルム定量が可能であり、バイオフィルム形成過程を多様な代謝系の動きとして捉えることが可能なため、新たなバイオフィルム形成抑制技術にもつながっていく。

Report

(7 results)
  • 2023 Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (28 results)

All 2022 2021 2020 2019 2018 2017

All Journal Article (13 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 13 results,  Open Access: 9 results) Presentation (15 results) (of which Int'l Joint Research: 7 results,  Invited: 3 results)

  • [Journal Article] Marine Biofilm Model Comprising a Loop-Type Biofilm Reactor and a Halomonas Strain HIG FST4 1, an Active Biofilm-Forming Bacterium2022

    • Author(s)
      Ogawa, Akiko Hosaka, Shoya Kanematsu, Hideyuki Yoshitake, Michiko
    • Journal Title

      Coatings

      Volume: 12 Issue: 10 Pages: 1605-1614

    • DOI

      10.3390/coatings12101605

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biofilm Formation Plays a Crucial Rule in the Initial Step of Carbon Steel Corrosion in Air and Water Environments2020

    • Author(s)
      Akiko Ogawa, Keito Takakura, Nobumitsu Hirai, Hideyuki Kanematsu, Daisuke Kuroda, Takeshi Kogo, Katsuhiko Sano, Satoshi Terada
    • Journal Title

      Materials

      Volume: 13 Issue: 4 Pages: 923-945

    • DOI

      10.3390/ma13040923

    • Related Report
      2020 Research-status Report 2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] In-situ detection based on the biofilm hydrophilicity for environmental biofilm formation2019

    • Author(s)
      Tanaka, Nobuyuki Kogo, Takeshi Hirai, Nobumitsu Ogawa, Akiko Kanematsu, Hideyuki Takahara, Junko Awazu, Akane Fujita, Nobuko Haruzono, Yoshihide Ichida, Shunji Tanaka, Yo
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 8070-8081

    • DOI

      10.1038/s41598-019-44167-6

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation for Immunity of Biomaterials Based on Raman Spectroscopy2018

    • Author(s)
      Hideyuki Kanematsu, Yuta Sakagami, Dana M. Barry, Michiko Yoshitake, Akiko Ogawa, Nobumitsu Hirai, Takeshi Kogo, Daisuke Kuroda, Yoshimitsu Mizunoe
    • Journal Title

      Proceedings of Materials Science and Technology 2018 (MS&T18), Columbus, Ohio, the USA

      Volume: MS&T18 Pages: 1482-1489

    • DOI

      10.7449/2018mst/2018/mst_2018_1482_1489

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Biofilm Formation of a Polymer Brush Coating with Ionic Liquids Compared to a Polymer Brush Coating with a Non-Ionic Liquid2018

    • Author(s)
      Kanematsu Hideyuki、Oizumi Atsuya、Sato Takaya、Kamijo Toshio、Honma Saika、Barry Dana、Hirai Nobumitsu、Ogawa Akiko、Kogo Takeshi、Kuroda Daisuke、Sano Katsuhiko、Tsunashima Katsuhiko、Lee Seung-Hyo、Lee Myeong-Hoon
    • Journal Title

      Coatings

      Volume: 8 Issue: 11 Pages: 398-398

    • DOI

      10.3390/coatings8110398

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The issue with using DNA profiling as a sole method for investigating the role of marine biofilms in corrosion of metallic materials2018

    • Author(s)
      Makama, Zakari, Celikkol, Sukriye, Ogawa, Akiko, Gaylarde, Christine,, Beech, Iwona
    • Journal Title

      International Biodeterioration & Biodegradation

      Volume: 135 Pages: 33-38

    • DOI

      10.1016/j.ibiod.2018.09.007

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Microbiome Analysis of Biofilms of Silver Nanoparticle-Dispersed Silane-Based Coated Carbon Steel Using a Next-Generation Sequencing Technique2018

    • Author(s)
      Akiko Ogawa, Keito Takakura, Katsuhiko Sano, Hideyuki Kanematsu, Takehiko Yamano, Toshikazu Saishin, Satoshi Terada
    • Journal Title

      antibiotics (MPDI)

      Volume: 7 Issue: 4 Pages: 91-100

    • DOI

      10.3390/antibiotics7040091

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Electrochemical Responses of Graphene with Biofilm Formation on Various Metallic Substrates by Using Laboratory Biofilm Reactors2018

    • Author(s)
      Hideyuki Kanematsu, Kodai Shindo, Dana M. Barry, Nobumitsu Hirai, Akiko Ogawa, Daisuke Kuroda, Takeshi Kogo, Katsuhiko Sano, Hajime Ikegai and Yoshimitsu Mizunoe
    • Journal Title

      ECS Transactions

      Volume: 85 Issue: 13 Pages: 491-498

    • DOI

      10.1149/08513.0491ecst

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Polymer Brush Made by Ionic Liquids and the Inhibition Effects for Biofilm Formation2018

    • Author(s)
      Hideyuki Kanematsu, Atsuya Oizumi, Takaya Sato, Toshio Kamijo, Saika Honma, Dana M. Barry, Nobumitsu Hirai, Akiko Ogawa, Takeshi Kogo, Daisuke Kuroda, and Katsuhiko Tsunashima
    • Journal Title

      ECS Transactions

      Volume: 85 Issue: 13 Pages: 1089-1095

    • DOI

      10.1149/08513.1089ecst

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Effect of Sulfur Content on Microbial Composition and Biodegradation of a Brazilian Diesel and Biodiesel Blend (B10)2017

    • Author(s)
      de Azambuja, Aline O., Cazarolli, Juciana C., de Quadros, Patricia D., Bucker, Francielle, Correa, Camila, Casagranda, Juliano C., Ferrao, Marco F., Celikkol, Sukriye, Ogawa, Akiko, Bonifay, Vincent, Sunner, Jan A., Beech, Iwona B., Bento, Fatima M.
    • Journal Title

      Energy & Fuels

      Volume: 31 Issue: 11 Pages: 12305-12316

    • DOI

      10.1021/acs.energyfuels.7b02287

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 微生物が関わる金属腐食2017

    • Author(s)
      小川亜希子
    • Journal Title

      生物工学会誌

      Volume: 95 Pages: 608-611

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microbiomes of Biofilms on Decorative Siliceous Stone: Drawbacks and Advantages of Next Generation Sequencing2017

    • Author(s)
      Akiko Ogawa, Sukriye Celikkol-Aydin, Christine Gaylarde, Jose Antonio, Baptista-Neto, Iwona Beech
    • Journal Title

      Current Micobiology

      Volume: 74 Issue: 7 Pages: 848-853

    • DOI

      10.1007/s00284-017-1257-3

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Microbial communities on painted wet and dry external surfaces of a historic fortress in Niteroi, Brazil2017

    • Author(s)
      Ogawa, Akiko, Celikkol-Aydin, Sukriye, Gaylarde, Christine, Baptista-Neto, Jose Antonio, Beech, Iwona
    • Journal Title

      International Biodeterioration & Biodegradation

      Volume: 123 Pages: 164-173

    • DOI

      10.1016/j.ibiod.2017.06.018

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Applying the zinc nanoparticles and copper suboxide nanoparticles for siloxane-based coated aluminium plates to inhibit biofilm formation under a seawater condition2021

    • Author(s)
      Akiko Ogawa, Katsuhiko Sano, Masaki Iino, Hideyuki Kanematsu
    • Organizer
      INTERFINISH2020
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] 製鋼スラグの組成とバイオフィルムを形成する細菌叢との関連2019

    • Author(s)
      小川亜希子、田中礼士、鈴木賢紀、平井信充
    • Organizer
      日本鉄鋼協会秋季大会シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] Staphylococcus epidermidis biofilm formation in radio frequency alternating electromagnetic field2019

    • Author(s)
      H.Miura, K.Yokoi, H. Kanematsu, N.Hirai, T.Kogo, A.Ogawa, D.Kuroda, N.Wada, K.Sano
    • Organizer
      MRS-J 2019
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] バイオフィルム形成に対するシランコーティングの影響2019

    • Author(s)
      田堀 朱音、佐野 勝彦、小川 亜希子、矢野 真弓、廣部 崚馬、寺田 聡
    • Organizer
      第21回化学工学会学生発表会東京大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 細菌叢または遺伝子発現情報からバイオフィルムを解析する2019

    • Author(s)
      小川亜希子
    • Organizer
      第5回SUMS-NITS医工連携研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Application of Silane-Based Coating to Biomaterials for Inhibiting Biofilm Induced Infection2018

    • Author(s)
      Akiko Ogawa, Akane Tahori, Mayumi Yano, Ryouma Hirobe, Satoshi Terada, Daisuke Kuroda, Katsuhiko Sano, Hideyuki Kanematsu
    • Organizer
      The 31rd Annual and international meeting of the Japanese association of animal cell technology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ポリマーブラシ コーティングとそのバイオフィルム形成挙動2018

    • Author(s)
      大泉敦也、兼松秀行、佐藤貴哉、上条利夫、本田彩夏、平井信充、小川亜希子、幸後健、黒田大介、佐野勝彦、綱島克彦、Dana Barry
    • Organizer
      第28回 日本MRS年次大会
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 異なる構造を持つシラン系樹脂へのバイオフィルム付着性2018

    • Author(s)
      佐野勝彦、兼松秀行、平井信充、黒田大介、小川亜希子、幸後健
    • Organizer
      第28回 日本MRS年次大会
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 5種類の細菌とそれが作るバイオフィルム形成の差異について2018

    • Author(s)
      兼松秀行、小川亜希子、平井信充、幸後健、黒田大介、佐野勝彦、Dana Barry
    • Organizer
      第28回 日本MRS年次大会
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 定量PCRを利用した バイオフィルム定量系の構築2017

    • Author(s)
      宮本康太郎、小川亜希子
    • Organizer
      新領域創成研究会2017 おおさか
    • Related Report
      2017 Research-status Report
  • [Presentation] 生体材料のバイオフィルム感染症とコーティング剤によるその抑制2017

    • Author(s)
      小川亜希子、矢野真弓、佐野勝彦、兼松秀行
    • Organizer
      化学工学会第49回秋季大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] LBRによる材料上でのバイオフィルム作製と解析2017

    • Author(s)
      宇佐美将誉、小川亜希子
    • Organizer
      日本鉄鋼協会第174回秋季大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 大腸菌のバイオフィルム形成と遺伝子発現との関連2017

    • Author(s)
      宇佐美将誉、小川亜希子
    • Organizer
      日本鉄鋼協会第174回秋季大会「鉄鋼スラグ等各種材料上へのバイオフィルム形成挙動の評価・分析とその有効利用」
    • Related Report
      2017 Research-status Report
  • [Presentation] 表皮ブドウ球菌を用いた遺伝子発現情報利用によるバイオフィルム定量系の構築2017

    • Author(s)
      宮本康太郎、小川亜希子
    • Organizer
      異分野融合シンポジウム 微生物を基軸とした環境と電気と金属
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Atmospheric Corrosion of Various Spray Coated Specimens and Biofilms2017

    • Author(s)
      H. Kanematsu, A. Ogawa, T. Kogo, D. Kuroda, N. Hirai
    • Organizer
      Annual Meeting of Japan Thermal Spray Society. 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2017-04-28   Modified: 2025-01-30  

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