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Applications of Raman Optical Activity to Biomolecular Sciences

Research Project

Project/Area Number 17K05756
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionSaga University

Principal Investigator

Unno Masashi  佐賀大学, 理工学部, 教授 (50255428)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords振動分光 / 生物物理 / 光受容タンパク質 / 量子化学計算 / 分子分光学 / 生物物理学 / 国際研究者交流 / キラリティ
Outline of Final Research Achievements

Many biological cofactors, such as light-absorbing chromophores in photoreceptors, are intrinsically planar molecules. A protein environment, however, causes structural distortions of the cofactor, and such structural changes can lead to a modulation of chemical properties of the cofactor to maximize its biological activity. In this project, we have constructed a near-infrared excited Raman optical activity (ROA) spectrometer with a scattered circular polarization scheme. Using this state-of-the-art ROA spectrometer, We found that a hydrogen out-of-plane ROA band provides a spectroscopic ruler for the out-of-plane distortion of the chromophore that is embedded in a protein environment.

Academic Significance and Societal Importance of the Research Achievements

タンパク質は生体内におけるさまざまな機能に関与しており、生命現象の解明という基礎研究から生体分子の工業的な応用や医療にも関係する極めて重要な生体分子の一つである。従って、タンパク質の活性部位構造を明らかにすることは生命科学における重要な研究課題であり、我々はラマン光学活性分光とよばれる手法を用いることで、色素タンパク質の活性部位構造を解析する新しい研究手段を開発することに成功した。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (51 results)

All 2019 2018 2017 Other

All Int'l Joint Research (6 results) Journal Article (15 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 15 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (28 results) (of which Int'l Joint Research: 4 results,  Invited: 3 results) Remarks (2 results)

  • [Int'l Joint Research] Oklahoma State University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] RMIT大学(オーストラリア)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] オクラホマ州立大学/ノースイースタン大学(米国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] サンカルロス連邦大学(ブラジル)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] RMIT大学(オーストラリア)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] オクラホマ州立大学(米国)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Size-dependent separation of graphene oxide by deformation of packed-gel in a chromatographic column2019

    • Author(s)
      Takaoka Yuji、Esaki Shohei、Sakaguchi Koichi、Fujisawa Tomotsumi、Unno Masashi、Morisada Shintaro、Ohto Keisuke、Kawakita Hidetaka
    • Journal Title

      Separation Science and Technology

      Volume: 55 Issue: 7 Pages: 1356-1363

    • DOI

      10.1080/01496395.2019.1586726

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the Deprotonated Pyrrole Nitrogen of the Bilin-Based Photoreceptor by Raman Spectroscopy with an Advanced Computational Analysis2019

    • Author(s)
      Osoegawa Shinsuke、Miyoshi Risako、Watanabe Kouhei、Hirose Yuu、Fujisawa Tomotsumi、Ikeuchi Masahiko、Unno Masashi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 印刷中 Issue: 15 Pages: 3242-3247

    • DOI

      10.1021/acs.jpcb.9b00965

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functional importance of the oligomer formation of the cyanobacterial H+ pump Gloeobacter rhodopsin2019

    • Author(s)
      Iizuka Azusa、Kajimoto Kousuke、Fujisawa Tomotsumi、Tsukamoto Takashi、Aizawa Tomoyasu、Kamo Naoki、Jung Kwang-Hwan、Unno Masashi、Demura Makoto、Kikukawa Takashi
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 10711-10711

    • DOI

      10.1038/s41598-019-47178-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Low-Temperature Raman Spectroscopy of Halorhodopsin from Natronomonas pharaonis: Structural Discrimination of Blue-Shifted and Red-Shifted Photoproducts2019

    • Author(s)
      Fujisawa Tomotsumi、Kiyota Hayato、Kikukawa Takashi、Unno Masashi
    • Journal Title

      Biochemistry

      Volume: 58 Issue: 40 Pages: 4159-4167

    • DOI

      10.1021/acs.biochem.9b00643

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protochromic absorption changes in the two-cysteine photocycle of a blue/orange cyanobacteriochrome2019

    • Author(s)
      Teppei Sato, Takashi Kikukawa, Risako Miyoshi, Kousuke Kajimoto, Chinatsu Yonekawa, Tomotsumi Fujisawa, Masashi Unno, Toshihiko Eki, Yuu Hirose
    • Journal Title

      J. Biol. Chem

      Volume: 294 Issue: 49 Pages: 18909-18922

    • DOI

      10.1074/jbc.ra119.010384

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ize-dependent separation of graphene oxide by deformation of packed-gel in a chromatographic column2019

    • Author(s)
      Yuji Takaoka、Shohei Esaki、Koichi Sakaguchi、Tomotsumi Fujisawa、Masashi Unno、Shintaro Morisada、Keisuke Ohto、Hidetaka Kawakita
    • Journal Title

      Separation Science and Technology

      Volume: 印刷中

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spectroscopic ruler for measuring active-site distortions based on Raman optical activity of a hydrogen out-of-plane vibration2018

    • Author(s)
      Haraguchi Shojiro、Shingae Takahito、Fujisawa Tomotsumi、Kasai Noritaka、Kumauchi Masato、Hanamoto Takeshi、Hoff Wouter D.、Unno Masashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 115 Issue: 35 Pages: 8671-8675

    • DOI

      10.1073/pnas.1806491115

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Low-temperature Raman spectroscopy reveals small chromophore distortion in primary photointermediate of proteorhodopsin2018

    • Author(s)
      Fujisawa Tomotsumi、Abe Masahiro、Tamogami Jun、Kikukawa Takashi、Kamo Naoki、Unno Masashi
    • Journal Title

      FEBS Letters

      Volume: 592 Issue: 18 Pages: 3054-3061

    • DOI

      10.1002/1873-3468.13219

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Hydrogen Bonding Environments in the Photocycle Process around the Flavin Chromophore of the AppA-BLUF domain2018

    • Author(s)
      Iwata Tatsuya、Nagai Takashi、Ito Shota、Osoegawa Shinsuke、Iseki Mineo、Watanabe Masakatsu、Unno Masashi、Kitagawa Shinya、Kandori Hideki
    • Journal Title

      Journal of the American Chemical Society

      Volume: 140 Issue: 38 Pages: 11982-11991

    • DOI

      10.1021/jacs.8b05123

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Raman Optical Activity Reveals Carotenoid Photoactivation Events in the Orange Carotenoid Protein in Solution2017

    • Author(s)
      Fujisawa Tomotsumi、Leverenz Ryan L.、Nagamine Momoka、Kerfeld Cheryl A.、Unno Masashi
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 139 Issue: 30 Pages: 10456-10460

    • DOI

      10.1021/jacs.7b05193

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hydrogen Bonding Environment of the N3?H Group of Flavin Mononucleotide in the Light Oxygen Voltage Domains of Phototropins2017

    • Author(s)
      Iwata Tatsuya、Nozaki Dai、Yamamoto Atsushi、Koyama Takayuki、Nishina Yasuzo、Shiga Kiyoshi、Tokutomi Satoru、Unno Masashi、Kandori Hideki
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 24 Pages: 3099-3108

    • DOI

      10.1021/acs.biochem.7b00057

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Transient Resonance Raman Spectroscopy of a Light-Driven Sodium-Ion-Pump Rhodopsin from Indibacter alkaliphilus2017

    • Author(s)
      Kajimoto Kousuke、Kikukawa Takashi、Nakashima Hiroki、Yamaryo Haruki、Saito Yuta、Fujisawa Tomotsumi、Demura Makoto、Unno Masashi
    • Journal Title

      J. Phys. Chem. B

      Volume: 121 Issue: 17 Pages: 4431-4437

    • DOI

      10.1021/acs.jpcb.7b02421

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of an Azo-Based Photosensitizer Activated under Mild Hypoxia for Photodynamic Therapy2017

    • Author(s)
      Piao Wen、Hanaoka Kenjiro、Fujisawa Tomotsumi、Takeuchi Satoshi、Komatsu Toru、Ueno Tasuku、Terai Takuya、Tahara Tahei、Nagano Tetsuo、Urano Yasuteru
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 139 Issue: 39 Pages: 13713-13719

    • DOI

      10.1021/jacs.7b05019

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Broadband Stimulated Raman Spectroscopy in the Deep Ultraviolet Region2017

    • Author(s)
      H. Kuramochi, T. Fujisawa, S. Takeuchi, T. Tahara
    • Journal Title

      Chemical Physics Letters

      Volume: 印刷中 Pages: 543-546

    • DOI

      10.1016/j.cplett.2017.02.015

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Development of an Azoreductase-based Reporter System with Synthetic Fluorogenic Substrates2017

    • Author(s)
      Narae Shin, Kenjiro Hanaoka, Wen Piao, Takuya Miyakawa, Tomotsumi Fujisawa, Satoshi Takeuchi, Shodai Takahashi, Toru Komatsu, Tasuku Ueno, Takuya Terai, Tahei Tahara, Masaru Tanokura, Tetsuo Nagano, Yasuteru Urano
    • Journal Title

      ACS Chem. Biol.

      Volume: 12 Issue: 2 Pages: 558-563

    • DOI

      10.1021/acschembio.6b00852

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 分子動力学計算と量子化学計算を用いた光受容タンパク質RcaEの発色団の脱プロトン化部位の同定2019

    • Author(s)
      三好 理紗子,小副川 晋介,渡邉 亘平,広瀬 侑,藤澤 知績,池内 昌彦,海野 雅司
    • Organizer
      九重分子科学セミナー2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] 同位体標識p-クマル酸を用いたPhotoactive Yellow Proteinのラマン光学活性スペクトルの帰属2019

    • Author(s)
      石井 寿斗,原口 翔次郎,Jie Ren,新ヶ江 貴仁,藤澤 知績,花本 猛士,Wouter D. Hoff,海野 雅司
    • Organizer
      九重分子科学セミナー2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Raman Optical Activity of the Hydrogen Out-of-plane Vibration as a Reporter for Chromophore Distortions in a Photoreceptor Protein2019

    • Author(s)
      Unno, Masashi; Fujisawa, Tomotsumi; Haraguchi, Shojiro; Ishii, Hisato; Hoff, Wouter D.
    • Organizer
      10th International Conference for Advanced Vibrational Spectroscopy (ICAVS10)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Raman optical activity observes a clear structural change of active site caused by trimer formation of halorhodopsin2019

    • Author(s)
      Shogo Ogawa, Tomotsumi Fujisawa, Takashi Kikukawa, Masashi Unno
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Identification of the Deprotonated Pyrrole Nitrogen of the Bilin-Based Photoreceptor by Raman Spectroscopy with MD+QM/MM Analysis2019

    • Author(s)
      Risako Miyoshi, Shinsuke Osoegawa, Kouhei Watanabe, Yuu Hirose, Tomotsumi Fujisawa, Masahiko Ikeuchi, Masashi Unno
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Near-IR Raman optical activity spectroscopy of inward proton pump rhodopsin2019

    • Author(s)
      Ryosuke Kuroiwa, Tomotsumi Fujusawa, Yuki Sudo, Megumi Kamimura, Saki Inoue, Masashi Unno
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Protochromic Absorption Changes in Two-Cys Photocycle of the Blue/Orange Cyanobacteriochrome2019

    • Author(s)
      Teppei Sato, Takashi Kikukawa, Risako Miyoshi, Kosuke Kajimoto, Chinatsu Yonekawa, Tomotsumi Fujisawa, Masashi Unno, Toshihiko Eki, Yuu Hirose
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ラマン光学活性分光法を用いた光駆動型内向きプロトンポンプロドプシンの活性部位の構造解析2019

    • Author(s)
      _岩亮介,藤澤知績,須藤雄気,井上紗季,上村愛美,海野雅司
    • Organizer
      第42回溶液化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] ラマン光学活性で観るハロロドプシン多量体化に伴う活性部位の構造変化2019

    • Author(s)
      小川将吾,藤澤知績,菊川峰志,海野雅司
    • Organizer
      第42回溶液化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] ラマン光学活性分光法を用いた「内向き」プロトンポンプRmXeRの活性部位の構造解析2018

    • Author(s)
      黒岩亮介、藤澤知績、海野雅司、須藤雄気、井上紗希
    • Organizer
      九重分子科学セミナー2018
    • Related Report
      2018 Research-status Report
  • [Presentation] ラマン光学活性で観るハロロドプシン多量体形成における活性部位の構造変化2018

    • Author(s)
      小川将吾、藤澤知績、海野雅司、菊川峰志
    • Organizer
      九重分子科学セミナー2018
    • Related Report
      2018 Research-status Report
  • [Presentation] Raman optical activity spectroscopy of a new microbial rhodopsin with inward proton transport activity2018

    • Author(s)
      Tomotsumi Fujisawa, Ryosuke Kuroiwa, Megumi Kamimura, Saki Inoue, Yuki Sudo, Masashi Unno
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Research-status Report
  • [Presentation] Raman Optical Activity of the Hydrogen Out-of-plane Vibration is a Sensitive Probe of Chromophore Distortions in a Photoreceptor Protein2018

    • Author(s)
      Shojiro Haraguchi, Takahito Shingae, Tomotsumi Fujisawa, Noritaka Kasai, Masato Kumauchi, Takeshi Hanamoto, Wouter D. Hoff, and Masashi Unno
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Research-status Report
  • [Presentation] Assignment of Hydrogen Out-of-Plane Vibration of the p-Coumaric Acid Chromophore in Photoactive Yellow Protein2018

    • Author(s)
      Hisato Ishii, Shojiro Haraguchi, Jie Ren, Takahito Shingae, Tomotsumi Fujisawa, Takeshi Hanamoto, Wouter D. Hoff, Masashi Unno
    • Organizer
      26th International Conference on Raman Spectroscopy
    • Related Report
      2018 Research-status Report
  • [Presentation] A Spectroscopic Ruler for Measuring Active Site Distortions based on Raman Optical Activity of a Hydrogen Out-of-Plane Vibration2018

    • Author(s)
      Shojiro Haraguchi, Takahito Shingae, Tomotsumi Fujisawa, Noritaka Kasai, Masato Kumauchi, Takeshi Hanamoto, Wouter D. Hoff, Masashi Unno
    • Organizer
      6th International Conference on Vibrational Optical Activity
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Chromophore structural change in the primary photointermediate of sodium-pump rhodopsin studied by low-temperature Raman spectroscopy2018

    • Author(s)
      Yushi Nakamizo, Takashi Kikukawa, Tomotsumi Fujisawa, Masashi Unno
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Distinctively small distortion of retinal chromophore in K intermediate of proteorhodopsin observed by low-temperature Raman spectroscopy2018

    • Author(s)
      Tomtotsumi Fujisawa, Jun Tamogami, Takashi Kikukawa, Masashi Unno
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Poly(L-Proline)IIコンフォメーションをもつテトラアラニンのラ マン光学活性分光2018

    • Author(s)
      古田雅 和・藤澤知績・浦郷寛康・新ヶ江貴仁・高橋 聡・BLANCH Ewan・海野雅司
    • Organizer
      日本化学会 第98春季年会 (2018)
    • Related Report
      2017 Research-status Report
  • [Presentation] Anharmonically-coupled low frequency mode in green fluorescent protein: the assignment by QM/MM calculation2018

    • Author(s)
      FUJISAWA, Tomotsumi; UNNO, Masashi
    • Organizer
      日本化学会 第98春季年会 (2018)
    • Related Report
      2017 Research-status Report
  • [Presentation] 同位体標識 p-クマル酸を再構成した Photoactive Yellow Protein の振動スペクトルと帰属2018

    • Author(s)
      石井寿斗・原口翔次郎・Ren Jie・新ヶ江貴仁・藤澤知績・花本猛士・Hoff Wouter D.・海野雅司
    • Organizer
      日本化学会 第98春季年会 (2018)
    • Related Report
      2017 Research-status Report
  • [Presentation] ナトリウムポンプ型ロドプシン中間体の過渡共鳴ラマン分光法による研究2017

    • Author(s)
      梶本航介、菊川峰志、中島弘貴、山領春輝、斉藤優太、藤澤知績、出村誠、海野雅司
    • Organizer
      九重分子科学セミナー2017
    • Related Report
      2017 Research-status Report
  • [Presentation] Raman Optical Activity of Short Peptides Analyzed by Quantum Chemical Calculations Combined with Molecular Dynamics Simulations2017

    • Author(s)
      Masashi Unno
    • Organizer
      16th International Conference on Chiroptical Spectroscopy 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Active Site Structures of Photoactive Yellow Protein Revealed by Spectroscopy and QM/MM Calculations2017

    • Author(s)
      Shojiro Haraguchi, Jie Ren, Tomotsumi Fujisawa, Wouter D. Hoff, Masashi Unno
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Transient Resonance Raman Spectroscopy of a Light-Driven Sodium-Ion-Pump Rhodopsin from Indibacter alkaliphilus2017

    • Author(s)
      Kousuke Kajimoto, Takashi Kikukawa, Hiroki Nakashima, Haruki Yamaryo, Yuta Saito, Tomotsumi Fujisawa, Makoto Demura, Masashi Unno
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Raman optical activity probes the conformation of the retinal chromophore in microbial rhodopsins2017

    • Author(s)
      Junpei Matsuo, Takashi Kikukawa, Tomotsumi Fujisawa, Masashi Unno
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Evidence for close-to-open photoactivation of orange carotenoid protein from ultraviolet resonance Raman spectroscopy2017

    • Author(s)
      Yushi Nakamizo, Momoka Nagamine, Tomotsumi Fujisawa, Cheryl Kerfeld, Masashi Unno
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Functional importance of trimer formation of light-driven H+ pump Gloeobacter rhodopsin2017

    • Author(s)
      Azusa Iizuka, Takashi Kikukawa, Kousuke Kajimoto, Tomotsumi Fujisawa, Takashi Tsukamoto, Tomoyasu Aizawa, Naoki Kamo, Masashi Unno
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Raman optical activity of the hydrogen out-of-plane mode is a sensitive probe of chromophore distortions in a photoreceptor protein2017

    • Author(s)
      Masashi Unno
    • Organizer
      SciX2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] 佐賀大学 海野ー藤澤研究室

    • URL

      http://biophysics.chem.saga-u.ac.jp/

    • Related Report
      2018 Research-status Report
  • [Remarks] 佐賀大学 海野-藤澤研究室ホームページ

    • URL

      http://biophysics.chem.saga-u.ac.jp/

    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2022-02-21  

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