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Rapid freezing quench and ESR studies of biological molecules in transient states

Research Project

Project/Area Number 17K05758
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical chemistry
Research InstitutionOsaka City University

Principal Investigator

Matsuoka Hideto  大阪市立大学, 大学院理学研究科, 特任准教授 (90414002)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2019: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsESR / スピンラベル / タンパク質 / 核酸 / 構造変化 / 電子スピン共鳴 / 距離測定 / 生体超分子 / 構造生物 / 生体分子 / 急速凍結 / 構造解析 / 生物物理 / 光合成
Outline of Final Research Achievements

Pulsed ESR dipolar spectroscopy (PDS) methodology was extended to cases where the high-field approximation breaks down. Equations for the dipolar coupling constant was derived. It was shown on a heme protein that a PDS method called relaxation-induced dipolar modulation enhancement is well-suited to measuring such spectra and that the experimentally obtained dipolar spectra are in full agreement with the derived equations. We introduced a spin labeling strategy based on click chemistry in solution that, in combination with enzymatic ligation, allows highly efficient labeling of complex. Conformations of the preQ1 aptamer and its dynamics were monitored by ESR and PDS in the frozen state. A rapid freezing equipment was successfully constructed, and applied to the reaction of metmyoglobin with sodium azide, which was monitored by ESR.

Academic Significance and Societal Importance of the Research Achievements

本研究では、ESRを用いた構造解析のための、新しい解析手法やスピンラベル化法の提唱、ならびに急速凍結システムの構築を行った。対象とした系は、リボスイッチやイオンチャンネルなど、その構造変化の観測が実際に様々な分野で注目されているものであり、本研究成果は、関連分野にインパクトを与えるものであった。また、本研究で報告した研究手法は、構造変化を伴う生体反応の分子レベルでの追跡に有用なものとして、今後も活用されるものと期待できる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (35 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (5 results) Journal Article (8 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 8 results) Presentation (22 results) (of which Int'l Joint Research: 10 results,  Invited: 6 results)

  • [Int'l Joint Research] ボン大学(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] 国際トモグラフィセンター(ロシア連邦)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] ボン大学/欧州高度教育研究センター(ドイツ)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] 国際トモグラフィセンター(ロシア連邦)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] ボン大学/欧州高度教育研究センター/フライブルク大学(ドイツ)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Trityl-Aryl-Nitroxide-Based Genuinely g-Engineered Biradicals, As Studied by Dynamic Nuclear Polarization, Multifrequency ESR/ENDOR, Arbitrary Wave Generator Pulse Microwave Waveform Spectroscopy, and Quantum Chemical Calculations2019

    • Author(s)
      Sato Kazunobu、Hirao Rei、Timofeev Ivan、Krumkacheva Olesya、Zaytseva Elena、Rogozhnikova Olga、Tormyshev Victor M.、Trukhin Dmitry、Bagryanskaya Elena、Gutmann Torsten、Klimavicius Vytautas、Buntkowsky Gerd、Sugisaki Kenji、Nakazawa Shigeaki、Matsuoka Hideto、Toyota Kazuo、Shiomi Daisuke、Takui Takeji
    • Journal Title

      The Journal of Physical Chemistry A

      Volume: 123 Issue: 34 Pages: 7507-7517

    • DOI

      10.1021/acs.jpca.9b07169

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pulsed EPR Dipolar Spectroscopy under the Breakdown of the High‐Field Approximation: The High‐Spin Iron(III) Case2019

    • Author(s)
      Abdullin Dinar、Matsuoka Hideto、Yulikov Maxim、Fleck Nico、Klein Christoph、Spicher Sebastian、Hagelueken Gregor、Grimme Stefan、L?tzen Arne、Schiemann Olav
    • Journal Title

      Chemistry. A European Journal

      Volume: 25 Issue: 37 Pages: 1-10

    • DOI

      10.1002/chem.201900977

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Isostructural M(II) complexes (M = Mn, Fe, Co) with field-induced slow magnetic relaxation for Mn and Co complexes2019

    • Author(s)
      Uchida Kaiji、Cosquer Goulven、Sugisaki Kenji、Matsuoka Hideto、Sato Kazunobu、Breedlove Brian K.、Yamashita Masahiro
    • Journal Title

      Dalton Transactions

      Volume: 48 Issue: 32 Pages: 12023-12030

    • DOI

      10.1039/c8dt02150c

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] EPR and DEER Characterization of New Mixed Weakly Coupled Nitroxide Triradicals for Molecular Three-Spin Qubits2019

    • Author(s)
      Zaytseva Elena、Timofeev Ivan、Krumkacheva Olesya、Parkhomenko Dmitryi、Mazhukin Dmitrii、Sato Kazunobu、Matsuoka Hideto、Takui Takeji、Bagryanskaya Elena
    • Journal Title

      Applied Magnetic Resonance

      Volume: 印刷中 Issue: 8 Pages: 967-976

    • DOI

      10.1007/s00723-019-01125-9

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] High-Yield Spin Labeling of Long RNAs for Electron Paramagnetic Resonance Spectroscopy2018

    • Author(s)
      Kerzhner Mark、Matsuoka Hideto、Wuebben Christine、Famulok Michael、Schiemann Olav
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 20 Pages: 2923-2931

    • DOI

      10.1021/acs.biochem.8b00040

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ESR analyses of picket fence Mn^II and 6th ligand coordinated Fe^III porphyrins (S = 5/2) and a Co^II(hfac) complex (S = 3/2) with sizable ZFS parameters revisited: A full spin Hamiltonian approach and quantum chemical calculations2018

    • Author(s)
      Yamane Takeshi、Sugisaki Kenji、Matsuoka Hideto、Sato Kazunobu、Toyota Kazuo、Shiomi Daisuke、Takui Takeji
    • Journal Title

      Dalton Transactions

      Volume: 47 Issue: 46 Pages: 16429-16444

    • DOI

      10.1039/c8dt02988a

    • NAID

      120006776860

    • URL

      https://ocu-omu.repo.nii.ac.jp/records/2019797

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Time-Resolved Electron Paramagnetic Resonance and Theoretical Investigations of Metal-Free Room-Temperature Triplet Emitters2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 139 Issue: 37 Pages: 12968-12975

    • DOI

      10.1021/jacs.7b04561

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Analyses of sizable ZFS and magnetic tensors of high spin metallocomplexes2017

    • Author(s)
      Takeshi Yamane, Kenji Sugisaki, Tomoki Nakagawa, Hideto Matsuoka, Takahisa Nishio, Shigemori Kinjyo, Nobuyuki Mori, Satoshi Yokoyama, Chika Kawashima, Naoki Yokokura, Kazunobu Sato, Yuki Kanzaki, Daisuke Shiomi, Kazuo Toyota, David H. Dolphin, Wei-Ching Lin, Charles A. McDowell, Makoto Tadokoroc, Takeji Takui
    • Journal Title

      Phys Chem Chem Phys

      Volume: 19 Issue: 36 Pages: 24769-24791

    • DOI

      10.1039/c7cp03850j

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Surface recombination model for electron lifetime in intrinsic diamond2020

    • Author(s)
      K. Konishi、I. Akimoto、H. Matsuoka、Ian Friel、J. Isberg、N. Naka
    • Organizer
      Hasselt Diamond Workshop 2020
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Correlation between p-conjugation network and luminescence of fused phenazine derivatives2019

    • Author(s)
      H. Matsuoka、H. Matsui、 O. Schiemann、 K. Sugisaki
    • Organizer
      EUROISMAR 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] りん光性有機EL発光体の開発に向けた フェナジン誘導体の励起状態研究2019

    • Author(s)
      松岡秀人、松井大樹、秋元郁子
    • Organizer
      SEST2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] ナフタレンジイミド誘導体の励起状態のダイナミクス2019

    • Author(s)
      芝野祐樹、神崎祐貴、秋元郁子、松岡秀人
    • Organizer
      SEST2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Q-band ESR装置を用いた光キャリアのサイクロトロン共鳴2019

    • Author(s)
      秋元郁子、 中暢子、 松岡秀人
    • Organizer
      SEST2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Rapid-scan法によるNV-センターESR信号の高効率測定2019

    • Author(s)
      牧祐介、松岡秀人、秋元郁子
    • Organizer
      SEST2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] トラップされた電子・正孔スピンのトンネル再結合とスピン間ダイポール相互作用2019

    • Author(s)
      秋元郁子、松岡秀人、関谷隆夫
    • Organizer
      第30回光物性研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ランダウ準位の不均一広がりを考慮した ダイヤモンドの真性キャリア移動度の抽出2019

    • Author(s)
      小西一貴、秋元郁子、松岡秀人、Ian Friel、J. Isberg D、中暢子
    • Organizer
      日本物理学会2019年秋季大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 室温でりん光を示すメタルフリー有機EL発光体の電子状態とスピンダイナミクス研究2019

    • Author(s)
      松岡 秀人、松井 大樹、Olav Schiemann
    • Organizer
      日本化学会第99春季年会
    • Related Report
      2018 Research-status Report
  • [Presentation] PELDOR with Microsecond Time Resolution2018

    • Author(s)
      Tobias Hett、Tobias Zbik、Hideto Matsuoka、Reinhard Seifert、Benjamin Kaupp、Olav Schiemann
    • Organizer
      APES-IES2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Conventional ESR Analyses of Sizable ZFS Tensors in Metal Ionic High Spin Systems in Harmony with Quantum Chemical Calculations: Applications to Some Important High Spin Metallocomplexes2018

    • Author(s)
      Takeshii Yamane、Kenji Sugisaki、Hideto Matsuoka、Kazunobu Sato、Kazuo Toyota、Daisuke Shiomi、 Takeji Takui
    • Organizer
      APES-IES2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Double electron-electron resonance with arbitrary-waveform pulses: application to randomly distributed electron and hole spins in a semiconductor2018

    • Author(s)
      Ikuko Akimoto、Hideto Matsuoka、Takao Sekiya
    • Organizer
      APES-IES2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] - Time-resolved EPR, Optical, and Quantum Chemical Studies of pi-conjugated phenazine derivatives2018

    • Author(s)
      Hideto Matsuoka、Hiroki Matsui、Olav Schiemann、Kenji Sugisaki
    • Organizer
      APES-IES2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ホスホニウム基を有する安定なナフタレンジイミドの電子構造とダイナミクスの研究2018

    • Author(s)
      崎山 弾、巽 俊輔、杉崎 研司、松岡 秀人、佐藤 和信、豊田 和男、塩見 大輔、Sharvan Kumar、Sudhir Kumar Keshri、Yogendra Kumar、Pritam Mukhopadhyay、工位 武治
    • Organizer
      SEST2019
    • Related Report
      2018 Research-status Report
  • [Presentation] ピリジンおよびベンゼンが縮環したフェナジンの時間分解EPRおよび発光測定2018

    • Author(s)
      松井大樹、杉崎研司、Olav Schiemann、佐藤和信、松岡秀人
    • Organizer
      SEST2019
    • Related Report
      2018 Research-status Report
  • [Presentation] 縮環フェナジン類におけるπ共役ネットワークと発光の相関2018

    • Author(s)
      松岡秀人、松井大樹、Olav Schiemann、杉崎研司
    • Organizer
      SEST2019
    • Related Report
      2018 Research-status Report
  • [Presentation] Excited Triplet States of Metal-Free Emitters for OLEDs2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Frank Neese, Sigurd Hoeger, Olav Schiemann
    • Organizer
      AWEST2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Metal-Free Room-Temperature Triplet Emitters as Studied by Time-Resolved EPR and Quantum Chemical Calculations2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Organizer
      The 11th Japanese-Russian workshop
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Time-Resolved EPR and Theoretical Investigations of Metal-Free Dual Singlet-Triplet Emitters in OLEDs2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Organizer
      MOLMAG2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Time-Resolved EPR and Theoretical Investigations of Metal-Free Triplet Emitters for Organic Light Emitting Diodes2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Organizer
      MDMR2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 室温でりん光を示す有機EL発光物質の時間分解EPR および理論計算による研究2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Wolfram Ratzke, John M. Lupton, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Organizer
      第11回分子科学討論会2017
    • Related Report
      2017 Research-status Report
  • [Presentation] メタルフリーOELD発光体の時間分解ESRおよび理論計算による研究2017

    • Author(s)
      Hideto Matsuoka, Marius Retegan, Lisa Schmitt, Wolfram Ratzke, John M. Lupton, Sigurd Hoeger, Frank Neese, Olav Schiemann
    • Organizer
      SEST2017
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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