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The mechanism of nucleosome structure regulated by G-quadruplex

Research Project

Project/Area Number 17K05930
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionShizuoka University

Principal Investigator

Oyoshi Takanori  静岡大学, 理学部, 准教授 (80406529)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsグアニン四重鎖 / ヌクレオソーム / テロメア / ヒストン修飾 / RGG領域 / DNA構造 / DNA結合タンパク質 / エピジェネティクス / 核酸結合タンパク質 / ヘテロクロマチン
Outline of Final Research Achievements

G-quadruplex (G4) binding protein, TLS/FUS, led to trimethylation of histone H4 at lysine 20 at the heterochromatin of telomeres and downregulation of transcription of telomeric repeat-containing RNA. To investigate the effect of structure of the arginine-glycine-glycine repeat (RGG) domain in TLS/FUS for G4 binding, we analyzed the G4 binding activities of proteins purified in a buffer with high concentrations of urea and KCl to disrupt the β-spiral structure of RGG domain. It reveals that the G4-specific binding abilities of TLS/FUS require β-spiral structure formation of RGG domain. Furthermore, we investigated the effect of the RNA recognition motif (RRM) and RGG domain of nucleolin on G4 binding and formation. Our findings indicate that Phe in RGG domain is responsible for G4 binding and folding. Moreover, RRM potentially binds to a guanine-rich single strand and folds the G4 with a 5′-terminal and 3′-terminal single strand containing guanine.

Academic Significance and Societal Importance of the Research Achievements

遺伝情報を有するDNAやRNAは、単純な1本鎖や典型的な右巻き二本鎖構造だけでなく、細胞内でさまざまな局所構造を形成している。特に、染色体末端構造のテロメアや特定の遺伝子のグアニン塩基が豊富なDNAは、グアニン四重鎖構造を形成して、現代の高齢化社会で問題になっているガンや神経性疾患に関わることが知られている。本研究では、このような疾患に関わっているグアニン四重鎖に結合するタンパク質の機能と構造的特徴、さらにグアニン四重鎖認識機構を明らかにした。これらの結果は、グアニン四重鎖が関わる疾患機構の解明につながるだけでなく、グアニン四重鎖構造を標的とする薬剤の開発に大きく貢献できると考えられる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (22 results)

All 2020 2019 2018 2017 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results,  Open Access: 5 results) Presentation (8 results) (of which Invited: 4 results) Remarks (3 results)

  • [Journal Article] RNA sequence and length contribute to RNA-induced conformational change of TLS/FUS2020

    • Author(s)
      Hamad Nesreen、Mashima Tsukasa、Yamaoki Yudai、Kondo Keiko、Yoneda Ryoma、Oyoshi Takanori、Kurokawa Riki、Nagata Takashi、Katahira Masato
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 2629-2629

    • DOI

      10.1038/s41598-020-59496-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Roles of the RGG Domain and RNA Recognition Motif of Nucleolin in G-Quadruplex Stabilization2020

    • Author(s)
      Masuzawa Tatsuki、Oyoshi Takanori
    • Journal Title

      ACS Omega

      Volume: 5 Issue: 10 Pages: 5202-5208

    • DOI

      10.1021/acsomega.9b04221

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Modulation of histone modifications and G-quadruplex structures by G-quadruplex-binding proteins2020

    • Author(s)
      Oyoshi Takanori、Masuzawa Tatsuki
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: - Issue: 1 Pages: 39-44

    • DOI

      10.1016/j.bbrc.2020.02.178

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and structure determination of a new cytotoxic peptide, curacozole, from Streptomyces curacoi based on genome mining.2019

    • Author(s)
      Kaweewan, I., Komaki, H., Hemmi, H., Hoshino, K., Hosaka, T., Isokawa, G., Oyoshi, T., and Kodani, S.
    • Journal Title

      J Antibiot

      Volume: 72 Issue: 1 Pages: 1-7

    • DOI

      10.1038/s41429-018-0105-4

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] G-quadruplex Binding Ability of TLS/FUS Depends on the β-Spiral Structure of the RGG Domain.2018

    • Author(s)
      Yagi, R., Miyazaki, T., and Oyoshi, T.
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: 12 Pages: 5894-5901

    • DOI

      10.1093/nar/gky391

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiplicity in Long Noncoding RNA Biomedical Sciences2018

    • Author(s)
      3.R. Kurokawa, R. Komiya, T. Oyoshi, Y. Matsuno, H. Tani, M. Katahira, K. Hitachi, Y. Iwashita, T. Yamashita, K. Kondo, R. Yoneda, Y. Yamaoki, N. Ueda, T. Mashima, N. Kobayashi, T. Nagata, A. Kiyoishi, M. Miyake, F. Kano, M. Murata1, N. Hamad, K. Sasaki, N. Shoji
    • Journal Title

      Biomedical Sciences

      Volume: 4 Issue: 2 Pages: 18-23

    • DOI

      10.11648/j.bs.20180402.11

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA2018

    • Author(s)
      Kondo Keiko、Mashima Tsukasa、Oyoshi Takanori、Yagi Ryota、Kurokawa Riki、Kobayashi Naohiro、Nagata Takashi、Katahira Masato
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 2864-2864

    • DOI

      10.1038/s41598-018-21142-1

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] G-quadruplex Binding Ability of TLS/FUS Depends on the β-Spiral Structure of the RGG Domain2018

    • Author(s)
      Yagi, R., Miyazaki, T., Oyoshi, T.
    • Journal Title

      Nucleic Acids Research

      Volume: 印刷中

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Bcl-XL-binding helical peptides possessing D-Ala residues at their C-termini with the advantage of long-lasting intracellular stabilities.2017

    • Author(s)
      Nogami, K., Tokumaru, H., Isokawa, G., Oyoshi, T., Fujimoto, K., and Inouye, M
    • Journal Title

      ChemComm

      Volume: 53 Issue: 89 Pages: 12104-12107

    • DOI

      10.1039/c7cc06904a

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Simple and Sensitive 19F NMR Approach for Studying the Interaction of RNA G-Quadruplex with Ligand Molecule and Protein2017

    • Author(s)
      H. L. Bao, T. Ishizuka, A. Iwanami, T. Oyoshi, Y. Xu*
    • Journal Title

      ChemistrySelect

      Volume: - Issue: 15 Pages: 4170-4175

    • DOI

      10.1002/slct.201700711

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Epigenetics regulated by DNA damage repair protein TLS/FUS2017

    • Author(s)
      Oyoshi, T., and Kino, K.
    • Journal Title

      Radiation Biology Research Communications

      Volume: 52 Pages: 227-238

    • NAID

      40021362455

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] メチル化によって制御されるTLS/FUSのRGG領域の核酸結合性の解析2020

    • Author(s)
      大吉崇文、増澤樹、八木涼太、河合信之輔
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] RGGモチーフによるグアニン四重鎖RNA凝集体形成機構2019

    • Author(s)
      大吉崇文、増澤樹、岩波文佳
    • Organizer
      第13回バイオ関連化学シンポジウム
    • Related Report
      2019 Annual Research Report
  • [Presentation] Is DNA a double-stranded helix? -The relationship between DNA local conformations and epigenetics-2019

    • Author(s)
      大吉崇文
    • Organizer
      第60回歯工学連携講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Arg-Gly-Gly繰り返し領域によって制御される非ワトソンクリック型核酸の機能2018

    • Author(s)
      大吉崇文
    • Organizer
      有用物質合成研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] グアニン四重鎖結合タンパク質によるエピジェネティクス制御機構2018

    • Author(s)
      大吉崇文
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 非ワトソン・クリック型塩基対が広げる遺伝情報2018

    • Author(s)
      大吉崇文
    • Organizer
      日本薬学会東海支部講演会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] RGG繰り返し領域の核酸結合性の制御機構2017

    • Author(s)
      大吉崇文
    • Organizer
      第12回バイオ関連化学シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] グアニン四重鎖DNAとRNAに特異的に結合するタンパク質の開発2017

    • Author(s)
      大吉崇文
    • Organizer
      日本ケミカルバイオロジー学会 第12回年会
    • Related Report
      2017 Research-status Report
  • [Remarks] 大吉研究室

    • URL

      https://wwp.shizuoka.ac.jp/oyoshilaboratory/

    • Related Report
      2019 Annual Research Report
  • [Remarks] 静岡大学理学部大吉研究室

    • URL

      https://wwp.shizuoka.ac.jp/oyoshilaboratory/

    • Related Report
      2018 Research-status Report
  • [Remarks] 静岡大学教員データベース

    • URL

      http://tdb.shizuoka.ac.jp/ResearcherDB/public/Default2.aspx?id=11049&l=0

    • Related Report
      2017 Research-status Report

URL: 

Published: 2017-04-28   Modified: 2021-02-19  

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