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Rapid and accurate detection of ubiquitination using artificial ligase

Research Project

Project/Area Number 17K05942
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bio-related chemistry
Research InstitutionTokyo University of Science, Yamaguchi (2020)
Himeji Dokkyo University (2017-2019)

Principal Investigator

Miyamoto Kazuhide  山陽小野田市立山口東京理科大学, 薬学部, 教授 (10415317)

Co-Investigator(Kenkyū-buntansha) 砂川 真弓 (湯浅真弓)  姫路獨協大学, 薬学部, 助手 (40444509)
Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsユビキチン化 / バイオマーカ / がん診断 / ユビキチン
Outline of Final Research Achievements

Ubiquitin-conjugating (E2) enzymes of the ubiquitination pathway are associated with various cancers, such as leukemia, lung cancer, and gastric cancer. However, to date, detection of E2 activities is not practicable for capturing the pathological conditions of cancers due to complications related to the enzymatic cascade reaction. To overcome this hurdle, I have recently investigated a novel strategy for measuring E2 activities. Artificial RING fingers (ARFs) were developed to conveniently detect E2 activities during the ubiquitination reaction. ARFs were created by grafting the active sites of ubiquitin-ligating (E3) enzymes onto amino acid sequences with 38 residues. The use of the immunochromatography of the ARF and allowed us to monitor E2 activities using acute promyelocytic leukemia (APL)-derived cells following treatment with the anticancer drug bortezomib.

Academic Significance and Societal Importance of the Research Achievements

生体内のユビキチン化反応のE2(ユビキチン結合酵素)活性を簡便に捉えることができる新しい検出システムの開発を進めている。血液・組織中のE2活性を測定すれば新たながん診断の指標となりうることは広く認識されながらも、ユビキチン化が複雑なカスケード反応であるという理由から、これまでE2活性を定量的に計測するのは困難とされてきた。世界で初めて、人工的にユビキチンリガーゼを分子設計し、これを活用した簡便なE2活性の定量的な検出システムの開発に成功した。今後の更なる研究の発展により、ユビキチン化活性に基づいた新たながん診断、例えば、医薬品の効果を治療前に予測できるがん診断が可能になると期待されている。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (60 results)

All 2021 2020 2019 2018 2017 Other

All Journal Article (19 results) (of which Peer Reviewed: 19 results,  Open Access: 1 results) Presentation (37 results) (of which Int'l Joint Research: 6 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Solution structure of the zinc finger domain of human RNF144A ubiquitin ligase2020

    • Author(s)
      Kazuhide Miyamoto*, Kaori Migita, and Kazuki Saito
    • Journal Title

      Protein Science

      Volume: 29 Issue: 8 Pages: 1836-1842

    • DOI

      10.1002/pro.3903

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of Ubiquitination Activities using ARF on Micro Bioactive Analyzer2020

    • Author(s)
      Kazuhide Miyamoto
    • Journal Title

      Peptide Science

      Volume: -

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Zinc finger domain of the human DTX protein adopts a unique RING fold2019

    • Author(s)
      Miyamoto Kazuhide、Fujiwara Yuma、Saito Kazuki
    • Journal Title

      Protein Science

      Volume: 28 Issue: 6 Pages: 1151-1156

    • DOI

      10.1002/pro.3610

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Exploring amino acid residues for regulating E2 specificities of artificial RING fingers.2019

    • Author(s)
      Ayumi Yamashita, Kazuki Saito, Kazuhide Miyamoto*
    • Journal Title

      Pept. Sci.

      Pages: 63-63

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Detection of ubiquitination activities of artificial RING fingers in human breast cancer cells.2019

    • Author(s)
      Kazuhide Miyamoto*, Arisa Nakatani, Mayumi Sunagawa, Kazuki Saito
    • Journal Title

      Pept. Sci.

      Pages: 62-62

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Preparation of the silkmoth prothoracicotropic hormone receptor, Torso, a receptor tyrosine kinase with a novel dimer structure.2019

    • Author(s)
      Airi Uechi, Shoko Nakamichi, Yuma Yamabana, Mayumi Sunagawa, Yuri Ishigaki, Kazuhide Miyamoto, Kazuki Saito
    • Journal Title

      Pept. Sci.

      Pages: 32-32

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Unique RING finger structure from the human HRD1 protein2019

    • Author(s)
      Miyamoto Kazuhide、Taguchi Yukari、Saito Kazuki
    • Journal Title

      Protein Science

      Volume: 28 Issue: 2 Pages: 448-453

    • DOI

      10.1002/pro.3532

    • Related Report
      2019 Research-status Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Unique auto-ubiquitination activities of artificial RING fingers in cancer cells2018

    • Author(s)
      4.Kazuhide Miyamoto*, Arisa Nakatani, Mayumi Sunagawa, and Kazuki Saito
    • Journal Title

      Protein Science

      Volume: 27(9) Issue: 9 Pages: 1704-1709

    • DOI

      10.1002/pro.3452

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Design of a system for monitoring ubiquitination activities of E2 enzymes using engineered RING finger proteins2018

    • Author(s)
      Kazuhide Miyamoto*, Kazuki Saito
    • Journal Title

      Methods in Molecular Biology

      Volume: 1867 Pages: 75-87

    • DOI

      10.1007/978-1-4939-8799-3_6

    • ISBN
      9781493987986, 9781493987993
    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Detection of ubiquitination activities of artificial RING fingers in human breast cancer cells.2018

    • Author(s)
      Kazuhide Miyamoto*, Arisa Nakatani, Mayumi Sunagawa, Kazuki Saito
    • Journal Title

      Peptide Science

      Pages: 62-62

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Exploring amino acid residues for regulating E2 specificity of artificial RING fingers2018

    • Author(s)
      Ayumi Yamashita, Kazuki Saito, and Kazuhide Miyamoto*
    • Journal Title

      Peptide Science

      Pages: 63-63

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Preparation of the silkmoth prothoracicotropic hormone receptor, Torso, which is a receptor tyrosine kinase with novel dimer structure.2018

    • Author(s)
      Airi Uechi, Shoko Nakamichi, Yuma Yamabana, Mayumi Sunagawa, Yuri Ishigaki, Kazuhide Miyamoto, Kazuki Saito*
    • Journal Title

      Peptide Science

      Pages: 32-32

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Concise machinery for monitoring ubiquitination activities using novel artificial RING fingers2018

    • Author(s)
      Miyamoto Kazuhide、Saito Kazuki
    • Journal Title

      Protein Science (Invited Review)

      Volume: 27 Issue: 8 Pages: 1354-1363

    • DOI

      10.1002/pro.3427

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Detection of E2 activities in cancer cells using an artificial E3 ligase2018

    • Author(s)
      Ayumi Yamashita, Kazuki Saito, Kazuhide Miyamoto
    • Journal Title

      Pept. Sci.

      Pages: 152-153

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Cellular effects of artificial ubiquitin ligases on cancer cells.2018

    • Author(s)
      Mayumi Sunagawa, Ayumi Yamashita, Kazuki Saito, Kazuhide Miyamoto
    • Journal Title

      Mayumi Sunagawa, Ayumi Yamashita, Kazuki Saito, Kazuhide Miyamoto*:

      Pages: 124-125

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Solution structure of the PHD finger from the human KIAA1045 protein2018

    • Author(s)
      Kazuhide Miyamoto, Ayumi Yamashita, Kazuki Saito
    • Journal Title

      Protein Science

      Volume: 27 Issue: 5 Pages: 903-1012

    • DOI

      10.1002/pro.3389

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] The unique N‐terminal zinc finger of synaptotagmin‐like protein 4 reveals FYVE structure2017

    • Author(s)
      Kazuhide Miyamoto, Arisa Nakatani, Kazuki Saito
    • Journal Title

      Protein Science

      Volume: 26 Issue: 12 Pages: 2451-2457

    • DOI

      10.1002/pro.3301

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] The zinc finger domain of RING finger protein 141 reveals a unique RING fold2017

    • Author(s)
      Kazuhide Miyamoto, Airi Uechi, Kazuki Saito
    • Journal Title

      Protein Science

      Volume: 26 Issue: 8 Pages: 1681-1686

    • DOI

      10.1002/pro.3201

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of Molecular Design Strategy of Artificial Ubiquitin-ligases — Toward Cancer Diagnosis Based on Ubiquitination Activities —2017

    • Author(s)
      宮本 和英, 砂川 真弓, 齋藤 一樹
    • Journal Title

      BUNSEKI KAGAKU

      Volume: 66 Issue: 6 Pages: 393-402

    • DOI

      10.2116/bunsekikagaku.66.393

    • NAID

      130005746056

    • ISSN
      0525-1931
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Detection of ubiquitination activities in cancer cells using artificial RING fingers2021

    • Author(s)
      Kazuhide Miyamoto
    • Organizer
      65TH Annual Meeting of Biophysical Society
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Detection of ubiquitination activities using ARF on micro Bioactive analyzer2020

    • Author(s)
      宮本和英
    • Organizer
      第57回ペプチド討論会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 人工分子ARFを活用するユビキチン化活性の検出法2020

    • Author(s)
      宮本和英, 中谷有沙, 黒涼菜, 齋藤一樹
    • Organizer
      分析イノベーション交流会
    • Related Report
      2019 Research-status Report
  • [Presentation] Auto-ubiquitination of artificial ring fingers in human breast cancer cells.2019

    • Author(s)
      宮本和英, 中谷有沙, 田口由加里, 齋藤一樹
    • Organizer
      第56回ペプチド討論会
    • Related Report
      2019 Research-status Report
  • [Presentation] 乳がん細胞膜中のユビキチン結合酵素活性の検出2019

    • Author(s)
      宮本和英
    • Organizer
      第78回日本癌学会学術総会
    • Related Report
      2019 Research-status Report
  • [Presentation] ブレビバチルス菌を用いたカイコガ前胸腺刺激ホルモンの分泌発現とその構造確認2019

    • Author(s)
      下田佳苗, 石垣悠里, 此上祥史, 宮本和英, 片岡宏誌, 齋藤一樹
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 自己ユビキチン化能を有する人工RING fingerの作製法2019

    • Author(s)
      宮本和英, 中谷有沙, 齋藤一樹
    • Organizer
      第71回日本生物工学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] 人工分子ARFを活用した乳がん細胞のユビキチン化活性検出2019

    • Author(s)
      宮本和英, 黒涼菜, 田口由加里, 中谷有沙, 齋藤一樹
    • Organizer
      第32回バイオメディカル分析シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 人工分子ARFを活用したユビキチン結合酵素活性の特異的検出2019

    • Author(s)
      黒涼菜, 田口由加里, 齋藤一樹, 宮本和英
    • Organizer
      第32回バイオメディカル分析シンポジウム
    • Related Report
      2019 Research-status Report
  • [Presentation] 複雑なジスルフィド構造を有するカイコガ前胸腺刺激ホルモンの大量調製法の確立 ~分泌型発現系を備えたブレビバチルス菌の利用~2019

    • Author(s)
      下田佳苗, 石垣悠里, 此上祥史, 片岡宏誌, 宮本和英, 齋藤一樹
    • Organizer
      第66回日本生化学会近畿支部例会
    • Related Report
      2019 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼを活用した乳がん細胞のE2活性検出2019

    • Author(s)
      宮本和英, 中谷有沙, 齋藤一樹
    • Organizer
      第79回分析化学討論会
    • Related Report
      2019 Research-status Report
  • [Presentation] 人工分子ARFが有するユビキチン結合酵素の特異的認識能の改変2019

    • Author(s)
      田口由加里、齋藤一樹、宮本和英
    • Organizer
      日本薬学会139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 人工分子ARFを用いるユビキチン結合酵素活性の検出2019

    • Author(s)
      宮本和英,中谷有沙、山下歩美、齋藤一樹
    • Organizer
      日本薬学会139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] あらかじめジスルフィド架橋で二量化したチロシンキナーゼ型レセプター・Torsoの大量調製2019

    • Author(s)
      中道祥子,上地愛理,山端裕真,石垣悠里,宮本和英,齋藤一樹
    • Organizer
      日本薬学会139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Detection of ubiquitination activities of artificial RING fingers in human breast cancer cells.2018

    • Author(s)
      Kazuhide Miyamoto, Arisa Nakatani, Mayumi Sunagawa, Kazuki Saito
    • Organizer
      10th International Peptide Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Exploring amino acid residues for regulating E2 specificity of artificial RING fingers2018

    • Author(s)
      Ayumi Yamashita, Kazuki Saito, and Kazuhide Miyamoto
    • Organizer
      10th International Peptide Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Preparation of the silkmoth prothoracicotropic hormone receptor, Torso, which is a receptor tyrosine kinase with novel dimer structure.2018

    • Author(s)
      Airi Uechi, Shoko Nakamichi, Yuma Yamabana, Mayumi Sunagawa, Yuri Ishigaki, Kazuhide Miyamoto, Kazuki Saito
    • Organizer
      10th International Peptide Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 乳がん細胞のユビキチン化に関与するE2活性の検出2018

    • Author(s)
      宮本和英,中谷有沙、齋藤一樹
    • Organizer
      第8回新アミノ酸分析研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] 細胞膜貫通領域のジスルフィド架橋を介して二量化しているチロシンキナーゼ型レセ プター・Torsoの大量調製2018

    • Author(s)
      上地愛理,中道祥子,山端裕真,砂川真弓,石垣悠里,宮本和英,齋藤一樹
    • Organizer
      第35回関西ペプチドセミナー
    • Related Report
      2018 Research-status Report
  • [Presentation] 人工RINGフィンガーが有するE2特異的認識能の検討2018

    • Author(s)
      山下歩美, 田口由加里, 齋藤一樹, 宮本和英
    • Organizer
      第68回日本薬学会近畿支部総会
    • Related Report
      2018 Research-status Report
  • [Presentation] これまでにはなかった二量化様式のチロシンキナーゼ型レセプター・Torsoの大量調製法の確立2018

    • Author(s)
      上地愛理, 中道祥子, 砂川真弓, 宮本和英, 齋藤一樹
    • Organizer
      第68回日本薬学会近畿支部総会
    • Related Report
      2018 Research-status Report
  • [Presentation] ブレビバチルス菌を用いたカイコガ前胸腺刺激ホルモンの大量調製法の確立 ~複雑なジスルフィド構造を有するリコンビナントタンパク質の発現・調製~2018

    • Author(s)
      石垣悠里, 下田佳苗, 此上祥史, 片岡宏誌, 宮本和英, 齋藤一樹
    • Organizer
      第68回日本薬学会近畿支部総会
    • Related Report
      2018 Research-status Report
  • [Presentation] Unique ubiquitination reaction of artificial E3 ligases in cancer cells2018

    • Author(s)
      宮本和英、山下美歩、齋藤一樹
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Research-status Report
  • [Presentation] 複雑なジスルフィド構造を有するカイコガ前胸腺刺激ホルモンPTTHの、ブレビバチルス菌を用いた大量調製2018

    • Author(s)
      石垣悠里、下田佳苗、此上祥史、片岡宏誌、宮本和英、齋藤一樹
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼのE2特異性を担うアミノ酸残基の探索2018

    • Author(s)
      山下歩美,齋藤一樹,宮本和英
    • Organizer
      第31回バイオメディカル分析科学シンポジウム
    • Related Report
      2018 Research-status Report
  • [Presentation] 膜貫通領域のジスルフィド架橋で二量化しているチロシンキナーゼ型レセプターTorso の大量調製2018

    • Author(s)
      上地愛理,砂川真弓,宮本和英,齋藤一樹
    • Organizer
      日本生化学会大会近畿支部
    • Related Report
      2018 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼを用いる特異的なE2活性検出の検討2018

    • Author(s)
      宮本和英、山下歩美、齋藤一樹
    • Organizer
      第78回分析化学討論会
    • Related Report
      2018 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼを活用するがん診断への挑戦2018

    • Author(s)
      宮本和英
    • Organizer
      日本薬学会 第138年会 一般シンポジウム 「がん診断・治療に貢献する次世代分析法開発への挑戦」【シンポジウム主催】
    • Related Report
      2017 Research-status Report
  • [Presentation] Molecular design of artificial RING fingers for detecting ubiquitination activities.2018

    • Author(s)
      Kazuhide Miyamoto, Ayumi Yamashita, Kazuki Saito
    • Organizer
      62nd Annual Meeting of the Biophysical Society
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 人工RINGフィンガーを用いた簡便なE2活性の検出法2017

    • Author(s)
      山下歩美, 齋藤一樹, 宮本和英
    • Organizer
      第34回関西地区ペプチドセミナー
    • Related Report
      2017 Research-status Report
  • [Presentation] Measuring E2 activities by artificial RING fingers in cancer cells.2017

    • Author(s)
      Mayumi Sunagawa, Arisa Nakatani, Kazuki Saito, Kazuhide Miyamoto
    • Organizer
      Consortium of Biological Sciences 2017 (ConBio2017)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 人工ユビキチンリガーゼを活用したユビキチン化活性の検出2017

    • Author(s)
      山下歩美, 齋藤一樹, 宮本和英
    • Organizer
      新アミノ酸分析研究会 第7回学術講演会
    • Related Report
      2017 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼのがん細胞における効果2017

    • Author(s)
      砂川真弓, 山下歩美, 齋藤一樹, 宮本和英
    • Organizer
      第54回ペプチド討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] 人工E3リガーゼを用いるがん細胞のE2活性の検出2017

    • Author(s)
      山下歩美, 齋藤一樹, 宮本和英
    • Organizer
      第54回ペプチド討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] 人工ユビキチンリガーゼを用いたがん細胞のユビキチン化活性の測定2017

    • Author(s)
      砂川真弓, 中谷有沙, 齋藤一樹, 宮本和英
    • Organizer
      第67回日本薬学会近畿支部総会・大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 人工E3リガーゼのユビキチン化反応に基づくがんのスクリーニング2017

    • Author(s)
      宮本和英
    • Organizer
      第76回日本癌学会学術総会
    • Related Report
      2017 Research-status Report
  • [Presentation] ユビキチン化活性の検出に用いる人工ユビキチンリガーゼの設計法2017

    • Author(s)
      宮本和英, 砂川真弓, 齋藤一樹
    • Organizer
      第77回分析化学討論会
    • Related Report
      2017 Research-status Report
  • [Book] Zinc Finger Proteins (Methods and Protocols)2018

    • Author(s)
      Kazuhide Miyamoto* et al. (Editor Jia Liu)
    • Total Pages
      276
    • Publisher
      Springer Nature
    • Related Report
      2018 Research-status Report
  • [Remarks] 山陽小野田市立 山口東京理科大学

    • URL

      http://www.socu.ac.jp/departments/faculty/kazuhide-miyamoto.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] 生物分析化学研究室

    • URL

      https://www.himeji-du.ac.jp/faculty/f_lab/bioanalysis/

    • Related Report
      2019 Research-status Report
  • [Remarks] 姫路獨協大学薬学部生物分析化学研究室

    • URL

      http://www.himeji-du.ac.jp/faculty/dp_pharm/pharm/bioanalysis/

    • Related Report
      2017 Research-status Report

URL: 

Published: 2017-04-28   Modified: 2022-01-27  

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