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Control performance analysis of DNA regulator and design and application of DNA combination circuits

Research Project

Project/Area Number 17K06500
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Control engineering/System engineering
Research InstitutionKyushu Institute of Technology

Principal Investigator

Nakakuki Takashi  九州工業大学, 大学院情報工学研究院, 教授 (30435664)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2019: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
KeywordsDNAレギュレータ / 生体分子反応系 / 非線形システム / 制御理論 / 特異摂動理論 / XOR回路 / オン・オフスイッチ回路 / DNAコンピューティング / レギュレータ / フィードバック / DNA分子反応系 / 人工分子反応回路 / 制御工学 / 生体生命情報学
Outline of Final Research Achievements

In this study, a new concept of “finite-time regulation property” has been defined for the regulation problem of DNA regulator. By applying the proposed coordinate transformation along with the properties of DNA strand displacement mechanism to the DNA regulator system, the non-standard singular perturbation theory has been established, which is expected to apply to various kinds of DNA regulators. In addition, a new XOR circuit that does not use the dual-rail method has been successfully designed, where a novel method for determining DNA base sequences by using mismatch base-pairs has been proposed. Furthermore, an on/off switching circuit that is needed for the motion control of a molecular robot has also been developed.

Academic Significance and Societal Importance of the Research Achievements

生体分子反応系という高次元非線形系に対して、制御理論を適用することの有用性や可能性を示すことができた。本研究を通じて、分子ロボット研究に制御理論研究者が参画する一助になれば幸いである。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (13 results)

All 2020 2019 2018 2017 Other

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results) Presentation (5 results) (of which Int'l Joint Research: 3 results) Remarks (1 results)

  • [Journal Article] Finite-time regulation property of DNA feedback regulator2020

    • Author(s)
      Nakakuki Takashi、Imura Jun-ichi
    • Journal Title

      Automatica

      Volume: 114 Pages: 108826-108826

    • DOI

      10.1016/j.automatica.2020.108826

    • NAID

      120007184455

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] XOR Gate Design Toward a Practical Complete Set for DNA Computing2020

    • Author(s)
      Nishijima Katsuhiro、Nakakuki Takashi
    • Journal Title

      New Generation Computing

      Volume: - Issue: 2 Pages: 285-301

    • DOI

      10.1007/s00354-020-00090-3

    • NAID

      120006997078

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of finite-time regulation property of biomolecular PI controller2020

    • Author(s)
      Rong Peng、Nakakuki Takashi
    • Journal Title

      Control Theory and Technology

      Volume: - Issue: 2 Pages: 135-142

    • DOI

      10.1007/s11768-020-0017-2

    • NAID

      120007043415

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Biomolecular Switch Circuits for Molecular Robots using a DNA Strand Displacement Mechanism2019

    • Author(s)
      Watanabe Keisuke、Nakakuki Takashi
    • Journal Title

      Proc. of SICE Annual Conference

      Volume: - Pages: 1334-1339

    • DOI

      10.23919/sice.2019.8859901

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Partical simulation on biomolecular reaction system in contaminating reaction field2018

    • Author(s)
      Keisuke Watanabe, Takashi Nakakuki
    • Journal Title

      18th International Conference on Control, Automation and Systems (ICCAS2018)

      Volume: -

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Stability analysis of Wnt-ERK cellular signalling by using Nyquist criterion2017

    • Author(s)
      Hidaka Taisei、Nakakuki Takashi
    • Journal Title

      Proceedings of 17th International Conference on Control, Automation and Systems

      Volume: - Pages: 675-679

    • DOI

      10.23919/iccas.2017.8204314

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] A tool for the design of DNA base sequences for molecular circuits2017

    • Author(s)
      Yoshida Yuki、Nakakuki Takashi
    • Journal Title

      Proceedings of 17th International Conference on Control, Automation and Systems

      Volume: - Pages: 669-674

    • DOI

      10.23919/iccas.2017.8204313

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] Development of automated mismatch DNA base sequence designer2018

    • Author(s)
      Yuki Yoshida, Takashi Nakakuki
    • Organizer
      THE 6th INTERNATIONAL SYMPOSIUM ON APPLIED ENGINEERING AND SCIENCES (SAES2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Stability Analysis of Wnt-ERK signal transduction system by Nyquist stability criterion2018

    • Author(s)
      Taisei Hidaka, Takashi Nakakuki
    • Organizer
      THE 6th INTERNATIONAL SYMPOSIUM ON APPLIED ENGINEERING AND SCIENCES (SAES2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Brief review on the principle implementation of P-Controller by DSD circuits2018

    • Author(s)
      Peng Rong, Takashi Nakakuki
    • Organizer
      18th International Conference on Control, Automation and Systems (ICCAS2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] ナイキスト安定判別法を用いたWnt-ERKシグナル伝達系の安定性解析2018

    • Author(s)
      日高大成, 中茎隆
    • Organizer
      第37回計測自動制御学会九州支部学術講演会
    • Related Report
      2018 Research-status Report
  • [Presentation] DNA鎖置換反応によるXOR回路の構築2017

    • Author(s)
      西島勝浩,中茎隆
    • Organizer
      計測自動制御学会 システム・情報部門 学術講演会 2017
    • Related Report
      2017 Research-status Report
  • [Remarks] 中茎研究室(Nakakuki Lab)ホームページ

    • URL

      https://tnakaku.wixsite.com/index

    • Related Report
      2019 Annual Research Report

URL: 

Published: 2017-04-28   Modified: 2021-02-19  

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