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Basic analysis of characteristics of circulating free DNA on cancer patients

Research Project

Project/Area Number 17K07197
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Tumor diagnostics
Research InstitutionSaga University

Principal Investigator

Aragane Naoko  佐賀大学, 医学部, 准教授 (20321846)

Co-Investigator(Kenkyū-buntansha) 佐藤 明美  佐賀大学, 医学部, 助教 (20568357)
中村 朝美  佐賀大学, 医学部, 助教 (90457490)
Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2019: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordscirculating free DNA / EGFR / extracellular vesicle / circulating tumor DNA / EGFR T790M / metastasis / 液体生検 / 肺癌
Outline of Final Research Achievements

We reported bimodal peaks of long fragment circulating free DNA (cfDNA) of 5 kb and short fragment cfDNA of 170 bp in patients with advanced lung cancer, and the amount of long fragment cfDNA is significantly higher in patients with distant metastasis. Long fragment cfDNA was found concomitant with extracellular vesicles (EVs). In human plasma samples, long fragment cfDNA was observed in the same fraction as long fraction detected from conditioned media, and short fragment cfDNA existed in the supernatant after centrifugation at 100,000g. Concentration of ctDNA in the supernatant was two times higher than that in plasma isolated by the conventional procedure. Long fragment cfDNA associated with tumor progression might therefore be released into peripheral blood, and it is possible that the long fragment cfDNA escapes degradation by co-existing with EVs. Examination of the biological characteristics of long fragment cfDNA is a logical subject of further investigation.

Academic Significance and Societal Importance of the Research Achievements

circulating tumor DNA (ctDNA) を用いたliquid biopsyは世界中で注目され2016年9月米国ではFDAで承認された。しかし、薬剤耐性化後の組織は腫瘍不均一性が高く、再生検との耐性化遺伝子変異一致率は60-70%前後である。また、遠隔転移を伴わい局所進行がんでは、liquid biopsyによるctDNA検出率は依然として低い。至適治療を行うためにはliquid biopsyの診断精度の向上が望まれる。本研究の成果のより、ctDNAをより効率的に分離できればliquid biopsyの精度改善につながる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (13 results)

All 2019 2018

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 6 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 1 results) Book (2 results)

  • [Journal Article] Discontinuation due to immune-related adverse events is a possible predictive factor for immune checkpoint inhibitors in patients with non-small cell lung cancer.2019

    • Author(s)
      1.Komiya K, Nakamura T, Abe T, Ogusu S, Nakashima C, Takahashi K, Kimura S, Sueoka-Aragane N
    • Journal Title

      Thorac Cancer.

      Volume: 10 Issue: 9 Pages: 1798-1804

    • DOI

      10.1111/1759-7714.13149

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanisms of acquired resistance to afatinib clarified with liquid biopsy.2018

    • Author(s)
      1.Nakamura T, Nakashima C, Komiya K, Kitera K, Hirai M, Kimura S, Aragane N.
    • Journal Title

      PLoS One

      Volume: 13 Issue: 12 Pages: e0209384-e0209384

    • DOI

      10.1371/journal.pone.0209384

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phase II trial of gefitinib plus pemetrexed after relapse using first-line gefitinib in patients with non-small cell lung cancer harboring EGFR gene mutations2018

    • Author(s)
      2.Uchibori K, Satouchi M, Sueoka-Aragane N, Urata Y, Sato A, Imamura F, Inoue T, Tachihara M, Kobayashi K, Katakami N, Kokan C, Hirashima T, Iwanaga K, Mori M, Aoe K, Morita S, Negoro S
    • Journal Title

      Lung Cancer

      Volume: 124 Pages: 65-70

    • DOI

      10.1016/j.lungcan.2018.07.031

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Investigation of appropriate pre-analytical procedure for circulating free DNA from liquid biopsy2018

    • Author(s)
      3.Sato A, Nakashima C, Abe T, Kato J, Hirai M, Nakamura T, Komiya K, Kimura S, Sueoka E, Sueoka-Aragane N
    • Journal Title

      Oncotarget

      Volume: 9 Issue: 61 Pages: 31904-31914

    • DOI

      10.18632/oncotarget.25881

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Automated DNA extraction using cellulose magnetic beads can improve EGFR point mutation detection with liquid biopsy by efficiently recovering short and long DNA fragments2018

    • Author(s)
      4.Nakashima C, Sato A, Abe T, Kato J, Hirai M, Nakamura T, Komiya K, Sueoka E, Kimura S, Sueoka-Aragane N
    • Journal Title

      Oncotarget

      Volume: 9 Issue: 38 Pages: 25181-25192

    • DOI

      10.18632/oncotarget.25388

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Current Status and Problems of T790M Detection, a Molecular Biomarker of Acquired Resistance to EGFR Tyrosine Kinase Inhibitors, with Liquid Biopsy and Re-biopsy2018

    • Author(s)
      5.Komiya K, Nakashima C, Nakamura T, Hirakawa H, Abe T, Ogusu S, Takahashi K, Takeda Y, Egashira Y, Kimura S, Sueoka-Aragane N
    • Journal Title

      Anticancer Res

      Volume: 38 Issue: 6 Pages: 3559-3566

    • DOI

      10.21873/anticanres.12628

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 肺がん患者における血漿遊離DNAの特性2019

    • Author(s)
      安部友範、中島千穂、荒金尚子
    • Organizer
      第59回日本呼吸器学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Characteristics of circulating tumor DNA in lung cancer patients2019

    • Author(s)
      Abe T, Nakashima C, Sato A, Harada Y, Sueoka E, Kimura K, Sueoka-Aragane N
    • Organizer
      American Association for Cancer Research Annual Meeting 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リキッドバイオプシーにおける検体保管とパネル検査2019

    • Author(s)
      荒金尚子
    • Organizer
      第5回クリニカルバイオバンク学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] How does circulating tumor DNA exist in peripheral blood?2019

    • Author(s)
      Abe T, Nakashima C, Sato A, Harada Y, Sueoka E, Kimura K, Sueoka-Aragane N
    • Organizer
      78th Annual Meeting of the Japanese Cancer Association
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 肺がん患者における血漿遊離DNAの生物学的特性の検討2019

    • Author(s)
      安部友範、中島千穂、佐藤明美、末岡栄三朗、木村晋也、荒金尚子
    • Organizer
      第60回日本肺癌学会学術集会
    • Related Report
      2019 Annual Research Report
  • [Book] 呼吸器内科2019

    • Author(s)
      荒金尚子
    • Total Pages
      6
    • Publisher
      科学評論社
    • Related Report
      2019 Annual Research Report
  • [Book] 呼吸器疾患 診断治療アプローチ2018

    • Author(s)
      荒金尚子
    • Total Pages
      5
    • Publisher
      中山書店
    • ISBN
      9784521745251
    • Related Report
      2018 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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