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Structural studies on meta-stable conformations of bisected glycan

Research Project

Project/Area Number 17K07303
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University (2019)
The University of Tokyo (2017-2018)

Principal Investigator

Nagae Masamichi  大阪大学, 微生物病研究所, 助教 (60619873)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords構造生物学 / 糖鎖生物学 / X線結晶構造解析 / X線結晶構造解析
Outline of Final Research Achievements

Polysaccharides are composed of various monosaccharide residues linked with glycosidic bonds. The 3D structures of polysaccharide are supposed to exist as dynamic equilibrium of multiple conformations. Compared with nucleic acids and proteins, the investigation of the relationship between sequence and 3D structure of polysaccharide has been not fully understood yet. This is because of high flexibility of 3D structure of polysaccharide and technical difficulties of structural analyses. In this proposal, I proposed the structural analysis of N-glycan which is representative glycan in mammals by X-ray crystallography. I and co-workers clarified several atomic structures of N-glycan and its related glycoproteins in this three years. Especially, we reported the crystal structure of cancer-associated glycosyltransferase GnT-V in complex with ligand N-glycan. This report has the potential to clarify the relationship between cancer specific glycan and its behavior.

Academic Significance and Societal Importance of the Research Achievements

糖鎖の配列と構造の相関は生体高分子に関する基礎研究であり、一見すると社会的な成果の還元が難しいように思われるかもしれない。しかし我々の体の中には数百種類の糖転移酵素が常時働いており、複雑な化学構造を持つ糖鎖が数多く存在する。驚くべきことにこれらの糖鎖の生理学的な意義は未だ不明な点だらけである。私の研究は生体内に豊富に存在するN型糖鎖に焦点を当て、その糖鎖の構造および改変メカニズムを形の情報から明らかにすることを目的にしていた。今回の研究を通してがん悪性化に関与する糖転移酵素の立体構造を明らかにすることができた。この成果は将来的な糖鎖の機能の解明につながることが期待される。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (13 results)

All 2020 2019 2018 2017

All Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 9 results,  Open Access: 6 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] 3D Structure and Function of Glycosyltransferases Involved in N-glycan Maturation2020

    • Author(s)
      Nagae Masamichi、Yamaguchi Yoshiki、Taniguchi Naoyuki、Kizuka Yasuhiko
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 2 Pages: 437-437

    • DOI

      10.3390/ijms21020437

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR2020

    • Author(s)
      Omahdi Zakaria、Horikawa Yuto、Nagae Masamichi、Toyonaga Kenji、Imamura Akihiro、Takato Koichi、Teramoto Takamasa、Ishida Hideharu、Kakuta Yoshimitsu、Yamasaki Sho
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 17 Pages: 5807-5817

    • DOI

      10.1074/jbc.ra120.012491

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Aspects of Carbohydrate Recognition Mechanisms of C-Type Lectins2019

    • Author(s)
      Nagae Masamichi、Yamaguchi Yoshiki
    • Journal Title

      Current Topics in Microbiology and Immunology

      Volume: 1 Pages: 1-30

    • DOI

      10.1007/82_2019_181

    • ISBN
      9783030622367, 9783030622374
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of protein landscapes around N-glycosylation sites from the PDB repository for understanding the structural basis of N-glycoprotein processing and maturation2018

    • Author(s)
      Suga Akitsugu、Nagae Masamichi、Yamaguchi Yoshiki
    • Journal Title

      Glycobiology

      Volume: 28 Issue: 10 Pages: 774-785

    • DOI

      10.1093/glycob/cwy059

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V2018

    • Author(s)
      Nagae Masamichi、Kizuka Yasuhiko、Mihara Emiko、Kitago Yu、Hanashima Shinya、Ito Yukishige、Takagi Junichi、Taniguchi Naoyuki、Yamaguchi Yoshiki
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 3380-3380

    • DOI

      10.1038/s41467-018-05931-w

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biophysical Analyses for Probing Glycan-Protein Interactions2018

    • Author(s)
      Nagae Masamichi、Yamaguchi Yoshiki
    • Journal Title

      Adv. Exp. Med. Biol.

      Volume: 1104 Pages: 119-147

    • DOI

      10.1007/978-981-13-2158-0_7

    • ISBN
      9789811321573, 9789811321580
    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.2017

    • Author(s)
      Nagae M, Mishra SK, Hanashima S, Tateno H, Yamaguchi Y
    • Journal Title

      Glycobiology

      Volume: 27(12) Issue: 12 Pages: 1120-1133

    • DOI

      10.1093/glycob/cwx081

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy2017

    • Author(s)
      M.Nagae, S.K.Mishra, M.Neyazaki, R.Oi, A.Ikeda, N.Matsugaki, S.Akashi, H.Manya, M.Mizuno, H.Yagi, K.Kato, T.Senda, T.Endo, T.Nogi, and Y.Yamaguchi
    • Journal Title

      Genes Cells

      Volume: - Issue: 4 Pages: 348-359

    • DOI

      10.1111/gtc.12480

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Crystallographic analysis of murine p24γ2 Golgi dynamics domain2017

    • Author(s)
      Nagae M, Liebschner D, Yamada Y, Morita-Matsumoto K, Matsugaki N, Senda T, Fujita M, Kinoshita T, Yamaguchi Y
    • Journal Title

      Proteins

      Volume: 85 Issue: 4 Pages: 764-70

    • DOI

      10.1002/prot.25242

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Structural studies of cancer-associated glycosyltransferase, GnT-V2018

    • Author(s)
      Nagae Masamichi、Kizuka Yasuhiko、Mihara Emiko、Kitago Yu、Hanashima Shinya、Ito Yukishige、Takagi Junichi、Taniguchi Naoyuki、Yamaguchi Yoshiki
    • Organizer
      10th Asian Community of Glycoscience and Glycotechnology
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 癌化に関連する糖転移酵素GnT-Vの結晶構造解析2018

    • Author(s)
      長江雅倫、木塚康彦、三原恵美子、北郷悠、花島慎弥、伊藤幸成、高木淳一、谷口直之、山口芳樹
    • Organizer
      第37回日本糖質学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] がん悪性化を促進する糖転移酵素GnT-VのX線結晶構造解析2018

    • Author(s)
      長江雅倫、木塚康彦、三原恵美子、北郷悠、花島慎弥、伊藤幸成、高木淳一、谷口直之、山口芳樹
    • Organizer
      日本結晶学会平成30年度年会
    • Related Report
      2018 Research-status Report
  • [Presentation] ジストログリカノパチー原因遺伝子産物Protein O-Mannosyl Kinase (POMK)の構造解析2017

    • Author(s)
      長江雅倫、Sushil K. Mishra、根谷崎牧子、大井里香、池田明美、松垣直宏、明石知子、萬谷博、弘瀬友理子、水野真盛、矢木宏和、加藤晃一、千田俊哉、遠藤玉夫、禾晃和、山口芳樹
    • Organizer
      日本糖質学会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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