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In crystallo thermodynamic analysis of the cofactor conformational change of copper amine oxidase

Research Project

Project/Area Number 17K07317
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka Medical College

Principal Investigator

Murakawa Takeshi  大阪医科大学, 医学部, 助教 (90445990)

Co-Investigator(Kenkyū-buntansha) 林 秀行  大阪医科大学, 医学部, 教授 (00183913)
馬場 清喜  公益財団法人高輝度光科学研究センター, タンパク質結晶解析推進室, 主幹研究員 (00437344)
Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsトパキノン / HAG法 / 銅含有アミン酸化酵素 / アミン酸化酵素 / X線結晶構造解析 / 蛋白質 / 酵素 / 結晶 / 反応中間体
Outline of Final Research Achievements

Many of the protein X-ray crystallographic analyses are currently performed at cryogenic temperatures to reduce the radiation damage. However, the obtained structures are ambiguous in terms of temperature information. In this study, we applied the humid air and glue-coating (HAG) method, which was initially developed as a protein crystal-mounting method applicable to noncryogenic X-ray crystallography, to thermodynamically analyze the conformational change of the cofactor in noncryocooled crystals of bacterial copper amine oxidase. The temperature-controlled HAG method provides a technique for thermodynamic analysis of conforma- tional changes occurring in protein crystals that are hardly scrutinized by conventional cryogenic X-ray crystallography.

Academic Significance and Societal Importance of the Research Achievements

本研究成果により,機能している状態のタンパク質の構造変化を,熱力学的に理解する一般的な手法が開発された.今後さらに,各種タンパク質の機能を,立体構造や平衡状態の変化をもとに解明し,有用酵素の作製や酵素を阻害する薬剤の開発などにも役立たせる基礎的な方法論として発展が期待できる.また,今まで結晶構造は溶液構造と異なり非生理的なのではないかという懸念があったが,今回の解析で,むしろ結晶構造の方が細胞内のタンパク質の状態を反映しているという重要な知見も得られた.

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (7 results)

All 2020 2019 2018 2017

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (5 results) (of which Invited: 1 results)

  • [Journal Article] Unique protonation states of aspartate and topaquinone in the active site of copper amine oxidase2020

    • Author(s)
      Shoji Mitsuo、Murakawa Takeshi、Boero Mauro、Shigeta Yasuteru、Hayashi Hideyuki、Okajima Toshihide
    • Journal Title

      RSC Advances

      Volume: 10 Issue: 63 Pages: 38631-38639

    • DOI

      10.1039/d0ra06365g

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase2018

    • Author(s)
      Murakawa Takeshi、Baba Seiki、Kawano Yoshiaki、Hayashi Hideyuki、Yano Takato、Kumasaka Takashi、Yamamoto Masaki、Tanizawa Katsuyuki、Okajima Toshihide
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Issue: 1 Pages: 135-140

    • DOI

      10.1073/pnas.1811837116

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Presentation] 銅含有アミン酸化酵素触媒機構の ”in crystallo” 熱力学的解析2019

    • Author(s)
      村川武志
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 銅含有アミン酸化酵素触媒機構の“in crystallo”熱力学的解析2019

    • Author(s)
      村川武志,馬場清喜,河野能顕,林秀行,矢野貴人,熊坂崇,山本雅貴,谷澤克行,岡島俊英
    • Organizer
      日本蛋白質科学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 銅アミン酸化酵素の補酵素生合成における初期反応中間体の解析2018

    • Author(s)
      佐々木康,村川武志,谷澤克行,岡島俊英,
    • Organizer
      酵素補酵素研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] In crystallo thermodynamic analysisによる銅アミン酸化酵素の反応機構解析2018

    • Author(s)
      村川武志,馬場清喜,河野能顕,林秀行,矢野貴人,熊坂崇,山本雅貴,谷澤克行,岡島俊英,
    • Organizer
      酵素補酵素研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] 銅含有アミン酸化酵素における触媒反応中のプロトン化状態についての理論的解明2017

    • Author(s)
      庄司光男,村川武志,重田育照,岡島俊英
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2022-01-27  

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