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High-resolution structural studies of electron transfer reaction mechanism in the redox cycle of NADH-cytochrome b5 reductase

Research Project

Project/Area Number 17K07325
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionNational Institutes for Quantum and Radiological Science and Technology

Principal Investigator

HIRANO Yu  国立研究開発法人量子科学技術研究開発機構, 量子生命科学領域, 主幹研究員(定常) (80710772)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords中性子回折 / X線回折 / 酸化還元 / 高分解能 / 酸化還元酵素 / 中性子構造解析 / X線構造解析 / 蛋白質 / 中性子構造 / X線構造
Outline of Final Research Achievements

High-resolution structural analyses were performed for NADH-cytochrome b5 reductase (b5R) and cytochrome b5 (b5) found in mammalian endoplasmic reticulum. The b5R and b5 redox system is involved in some metabolic processes including lipid synthesis. We have successfully determined high-resolution neutron and X-ray crystal structures for several redox states of b5R. The high-resolution structure analyses provide insights for understanding molecular mechanisms of the hydrogen movement that has important roles in the b5R redox cycle. Additionally, we could obtain high quality crystals of b5 with large volumes. Therefore, we will be able to perform high-resolution neutron structure analyses to visualize hydrogen atoms that have key roles in the b5 redox reaction.

Academic Significance and Societal Importance of the Research Achievements

タンパク質の高分解能構造解析例は限られているが、X線と中性子両方の特徴を生かした高精度構造解析は、酸化還元酵素の機能理解において重要な手法である。本研究によって、b5Rとb5を対象として酸化還元反応系全体に高精度構造解析の領域を拡張でき、これまで断片的な情報に基づき議論されてきた酸化還元反応機構に対し新しい知見を提供できると考えられる。また酸化還元反応機構の詳細理解が進むことで、b5R-b5系の関与する疾患への治療方法開発のみならず、b5R、b5を含む酸化還元酵素を利用したバイオ燃料電池の電極材料開発といった応用研究への貢献も期待できる。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (20 results)

All 2021 2020 2019 2018 2017

All Journal Article (1 results) Presentation (19 results) (of which Int'l Joint Research: 4 results,  Invited: 6 results)

  • [Journal Article] 量子構造生物学の創成と挑戦2020

    • Author(s)
      玉田太郎、平野優
    • Journal Title

      月刊オプトロニクス

      Volume: 39 Pages: 92-97

    • Related Report
      2020 Annual Research Report
  • [Presentation] 超高分解能X線構造解析、結合電子密度が見えた2021

    • Author(s)
      平野優
    • Organizer
      第419回CBI学会研究講演会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] NADH-シトクロムb5還元酵素反応系の高分解能立体構造解析2021

    • Author(s)
      平野優
    • Organizer
      2020年度第2回iBIX研究会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] High-resolution structure analysis of NADH-cytochrome b5 reductase2020

    • Author(s)
      Yu Hirano, Kazuo Kurihara, Katsuhiro Kusaka, Andreas Ostermann, Shigenobu Kimura, Kunio Miki, Taro Tamada
    • Organizer
      The 20th annual meeting of the Protein Science Society of Japan
    • Related Report
      2020 Annual Research Report
  • [Presentation] 高分解能立体構造解析で迫る酸化還元酵素の反応機構2020

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      第93回日本生化学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 高電位鉄硫黄タンパク質の高分解能X線構造解析2020

    • Author(s)
      平野優
    • Organizer
      iBIX-JAXA-KEK物構研-QST合同タンパク質研究会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] NADH-シトクロムb5還元酵素の結晶構造解析2020

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      日本結晶学会令和2年度年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 量子構造生物学の創成を目指した酸化還元タンパク質の高精度立体構造解析2020

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      量子生命科学会第2回大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 酸化還元タンパク質の水素原子を含めた立体構造解析2019

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      量子生命科学会第1回大会
    • Related Report
      2019 Research-status Report
  • [Presentation] NADHシトクロムb5還元酵素反応系の高分解能構造解析2019

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      第19回日本蛋白質科学会年会、第71回日本細胞生物学大会合同年会
    • Related Report
      2019 Research-status Report
  • [Presentation] NADHシトクロムb5還元酵素反応系の結晶構造解析2019

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      日本結晶学会令和元年度年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Structural studies of the NADH-cytochrome b5 reductase2019

    • Author(s)
      Yu Hirano, Kazuo Kurihara, Katsuhiro Kusaka, Andreas Ostermann, Shigenobu Kimura, Kunio Miki, Taro Tamada
    • Organizer
      3rd QST International Symposium
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] X-ray and neutron structure analyses of redox proteins at high-resolutions2018

    • Author(s)
      Yu Hirano
    • Organizer
      3rd International Symposium of Quantum Beam Science at Ibaraki University
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 酸化型NADHシトクロムb5還元酵素の中性子構造解析2018

    • Author(s)
      平野優、栗原和男、日下勝弘、木村成伸、三木邦夫、玉田太郎
    • Organizer
      第18回日本蛋白質科学会年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Neutron structure analysis of NADH cytochrome b5 reductase2018

    • Author(s)
      Yu Hirano, Kazuo Kurihara, Andreas Ostermann, Katsuhiro Kusaka, Shigenobu Kimura, Kunio Miki, Taro Tamada
    • Organizer
      German Conference for Research with Synchrotoron Radiation, Neutrons and Ion Beams at Large Facilities
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] NADHシトクロムb5還元酵素の高分解能構造解析2018

    • Author(s)
      平野優、栗原和男、日下勝弘、Andreas Ostermann、木村成伸、三木邦夫、玉田太郎
    • Organizer
      日本結晶学会2018年度年会
    • Related Report
      2018 Research-status Report
  • [Presentation] Neutron crystal structure studies of the oxidized form of NADH-cytochrome b5 reductase2018

    • Author(s)
      Yu Hirano, Kazuo Kurihara, Andreas Ostermann, Katsuhiro Kusaka, Shigenobu Kimura, Kunio Miki, Taro Tamada
    • Organizer
      Conference of Asian Crystallographic Association
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] X線と中性子を利用した酸化還元タンパク質の高分解能立体構造解析2018

    • Author(s)
      平野優
    • Organizer
      2017年度日本生物物理学会北海道支部例会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 酸化型NADHシトクロムb5還元酵素の中性子構造解析2017

    • Author(s)
      平野優、栗原和男、日下勝弘、木村成伸、三木邦夫、玉田太郎
    • Organizer
      平成29年度日本結晶学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] NADHシトクロムb5還元酵素の中性子構造解析2017

    • Author(s)
      平野優、栗原和男、日下勝弘、木村成伸、三木邦夫、玉田太郎
    • Organizer
      日本中性子科学会第17回年会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2022-01-27  

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