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Image analysis of EGF receptor signaling pathway

Research Project

Project/Area Number 17K07347
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionTokyo Women's Medical University

Principal Investigator

Tanabe Kenji  東京女子医科大学, 医学部, 准教授 (80423341)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2019: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords上皮成長因子 / 細胞内シグナル伝達 / 画像解析 / ハイコンテントスクリーニング / EGF受容体 / 化合物ライブラリー / シグナル伝達 / 化合物スクリーニング / イメージング解析 / 情報工学 / 細胞・組織 / 数理解析
Outline of Final Research Achievements

Epidermal growth factor receptor (EGFR) is one of major driver gene in cancer, and many clinically effective drugs that target EGFR-associated molecules have been developed. In this study, I combined image analysis with unsupervised machine learning to identify novel regulators involved in the EGFR pathway. Lung cancer cell line, A549, was treated with a pharmacologically active compound library to evaluate their target’s role in the pathway. Cells stimulated by EGF were fixed and stained to visualize several signaling proteins. Cell images were analyzed to evaluate cellular phenotype under the treatment of each compound. As result, three structurally different proteasome inhibitors were statistically identified to have an unique cellular phenotype. Proteasomes are known as degradative enzyme complex for ubiquitinated proteins, but its role in the EGFR pathway were still unknown. This study suggests that proteasome is an essential regulator for EGFR pathway.

Academic Significance and Societal Importance of the Research Achievements

EGFRはがんの主要な原因遺伝子の一つであり、その阻害剤が有効な抗がん剤であることが知られている。一方、EGFRの下流に位置するシグナル伝達分子の異常もがんで見つかっており、詳細な分子機構の理解が求められている。本研究では新たな制御因子としてプロテアソームを同定した。本研究で用いた画像解析のアプローチは他の様々な疾患モデルに容易に適用できるため、更なる発展・成果が期待される。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (14 results)

All 2019 2018 2017

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 1 results) Presentation (9 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Journal Article] Essential and distinct roles of phosphatidylinositol 4-kinases, Pik1p and Stt4p, in yeast autophagy2019

    • Author(s)
      Kurokawa, Y., Konishi, R., Yoshida, A., Fujii, E., Tomioku, K., Futagami, T., Tamaki, H., Tanabe, K., Fujita, A.
    • Journal Title

      Biochim. Biophys. Acta. Mol. Cell Biol. Lipids.

      Volume: 1864 Issue: 9 Pages: 1214-1225

    • DOI

      10.1016/j.bbalip.2019.05.004

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphatidylinositol 4‐phosphate on Rab7‐positive autophagosomes revealed by the freeze‐fracture replica labeling2018

    • Author(s)
      Kurokawa Yuna、Yoshida Akane、Fujii Emi、Tomioku Kanna、Hayashi Hiroki、Tanabe Kenji、Fujita Akikazu
    • Journal Title

      Traffic

      Volume: 20 Issue: 1 Pages: 82-95

    • DOI

      10.1111/tra.12623

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Image-Based Profiling Can Discriminate the Effects of Inhibitors on Signaling Pathways under Differential Ligand Stimulation2018

    • Author(s)
      Tanabe Kenji、Inagaki Ayane、Henmi Yuji、Satake Masanobu
    • Journal Title

      SLAS DISCOVERY: Advancing Life Sciences R&D

      Volume: 23 Issue: 4 Pages: 330-340

    • DOI

      10.1177/2472555217751091

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Segregation of phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate into distinct microdomains on the endosome membrane2017

    • Author(s)
      Yoshida Akane、Hayashi Hiroki、Tanabe Kenji、Fujita Akikazu
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Biomembranes

      Volume: 1859 Issue: 10 Pages: 1880-1890

    • DOI

      10.1016/j.bbamem.2017.06.014

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Microtubule Depolymerization by Kinase Inhibitors: Unexpected Findings of Dual Inhibitors2017

    • Author(s)
      Tanabe Kenji
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 18 Issue: 12 Pages: 2508-2508

    • DOI

      10.3390/ijms18122508

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] High content analysis with unsupervised machine learning to reveal a novel druggable target of EGFR pathway2019

    • Author(s)
      Kenji Tanabe
    • Organizer
      CYTO2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Image-based phenotypic profiling associated with EGF receptor trafficking and signal transduction reveals novel targets of drugs.2019

    • Author(s)
      Kenji Tanabe
    • Organizer
      SLAS2019 International Conference and Exhibition
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Image-based phenotypic profiling using a pharmacologically active compound library identify novel druggable targets.2018

    • Author(s)
      田邊賢司
    • Organizer
      日本癌学会学術総会
    • Related Report
      2018 Research-status Report
  • [Presentation] Image-based phenotypic profiling associated with EGF receptor trafficking and signal transduction reveals novel targets of drugs.2018

    • Author(s)
      Kenji Tanabe
    • Organizer
      SBI2 High Content 2018, 5th Annual Conference
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 細胞画像解析と機械学習による細胞内現象の理解と創薬への応用2018

    • Author(s)
      田邊賢司
    • Organizer
      北大・部局横断シンポジウム
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Image-based phenotypic profiling associated with EGF receptor trafficking and signal transductions reveals novel mode of action of drugs2017

    • Author(s)
      Kenji Tanabe
    • Organizer
      CBI学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Image-based compound profiling reveals functionally unrelated target molecules2017

    • Author(s)
      Kenji Tanabe
    • Organizer
      日本癌学会学術総会
    • Related Report
      2017 Research-status Report
  • [Presentation] Image-based phenotypic profiling for target deconvolution of drugs reveals novel regulatory mechanisms2017

    • Author(s)
      Kenji Tanabe
    • Organizer
      生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report
  • [Presentation] ハイコンテントアナリシスと機械学習による薬物作用機序の予測2017

    • Author(s)
      田邊賢司
    • Organizer
      スクリーニング学研究会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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