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Exploration of Glucosylceramide Transport Factors Using CRISPR Library

Research Project

Project/Area Number 17K07357
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Functional biochemistry
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

Yamaji TOshiyuki  国立感染症研究所, 細胞化学部, 室長 (50332309)

Project Period (FY) 2017-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywordsスフィンゴ糖脂質 / ゲノム編集 / スクリーニング / ゴルジ体 / 糖脂質 / ゲノムワイドスクリーニング / 脂質輸送 / 糖鎖 / 脂質 / 膜輸送
Outline of Final Research Achievements

In this study, we used CRISPR knockout library to search for novel factors affecting glycolipid transport. We succeeded in identifying genes involved in glycolipid metabolisms with high coverage. We succeeded in identifying SYS1, a multi-spanning transmembrane protein localized in the Golgi apparatus, in Vero cells. Knockout of SYS1 gene reduced Gb3 and instead remarkably increased GlcCer. The SYS1 knockout cells also showed a change in the morphology of the Golgi apparatus from an elongated laminar to an aggregated form, and dot-like structures of a trans-Golgi network marker TGN46 around the Golgi apparatus. This indicates that SYS1 regulates glycan biosynthesis through its involvement in the Golgi apparatus and trans-Golgi network trafficking.

Academic Significance and Societal Importance of the Research Achievements

スフィンゴ糖脂質は、高次機能や疾患に深く関与することが知られており、生体に欠かせない脂質である。スフィンゴ糖脂質の生合成酵素はほぼ同定されているものの、細胞内輸送因子に関しては未解明な点が残されており、代謝・輸送に関する因子の同定は重要な課題である。本研究により、ゴルジ体における糖鎖生合成の制御に関して重要な知見を得ており、糖鎖生物学及び細胞生物学的分野における学術的意義を示すものである。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (37 results)

All 2021 2020 2019 2018 2017

All Journal Article (15 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 12 results,  Open Access: 8 results) Presentation (22 results) (of which Int'l Joint Research: 4 results,  Invited: 8 results)

  • [Journal Article] Golgi maturation-dependent glycoenzyme recycling controls glycosphingolipid biosynthesis and cell growth via GOLPH3.2021

    • Author(s)
      Riccardo Rizzo, Domenico Russo, Kazuo Kurokawa, Alfredo Budillon, Franck Perez, Seetharaman Parashuraman, Yusuf A Hannun, Akihiko Nakano, Daniela Corda, Giovanni D’Angelo and Alberto Luini et al.,.
    • Journal Title

      The EMBO Journal

      Volume: 40 Issue: 8

    • DOI

      10.15252/embj.2020107238

    • Related Report
      2021 Annual Research Report 2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of SYS1 as a Host Factor Required for Shiga Toxin-Mediated Cytotoxicity in Vero Cells2021

    • Author(s)
      Sakuma Chisato、Sekizuka Tsuyoshi、Kuroda Makoto、Hanada Kentaro、Yamaji Toshiyuki
    • Journal Title

      Int J Mol Sci

      Volume: 22 Issue: 9 Pages: 4936-4936

    • DOI

      10.3390/ijms22094936

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Poliovirus-nonsusceptible Vero cell line for the World Health Organization global action plan2021

    • Author(s)
      Okemoto-Nakamura Y, Someya K, Yamaji T, Saito K, Takeda M, Hanada K
    • Journal Title

      Sci Rep

      Volume: 11 Issue: 1 Pages: 6746-6746

    • DOI

      10.1038/s41598-021-86050-3

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Galabiosylceramide is present in human cerebrospinal fluid2021

    • Author(s)
      Akiyama H, Ide M, Yamaji T, Mizutani Y, Niimi Y, Mutoh T, Kamiguchi H, Hirabayashi Y.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 536 Pages: 73-79

    • DOI

      10.1016/j.bbrc.2020.12.051

    • Related Report
      2020 Research-status Report
  • [Journal Article] Concise and Reliable Syntheses of Glycodendrimers via Self-Activating Click Chemistry: A Robust Strategy for Mimicking Multivalent Glycan?Pathogen Interactions2020

    • Author(s)
      Farabi K, Manabe Y, Ichikawa H, Miyake S, Tsutsui M, Kabayama K, Yamaji T, Tanaka K, Hung S-C, Fukase K.
    • Journal Title

      J Org Chem

      Volume: 85 Issue: 24 Pages: 16014-16023

    • DOI

      10.1021/acs.joc.0c01547

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Identification of Characteristic Genomic Markers in Human Hepatoma HuH-7 and Huh7.5.1-8 Cell Lines2020

    • Author(s)
      Kawamoto M#, Yamaji T#, Saito K, Shirasago Y, Satomura K, Endo T, Fukasawa M, Hanada K, Osada N.
    • Journal Title

      Front Genet

      Volume: 11 Pages: 546106-546106

    • DOI

      10.3389/fgene.2020.546106

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sphingomyelin Is Essential for the Structure and Function of the Double-Membrane Vesicles in Hepatitis C Virus RNA Replication Factories2020

    • Author(s)
      Gewaid H, Aoyagi H, Arita M, Watashi K, Suzuki R, Sakai S, Kumagai K, Yamaji T, Fukasawa M, Kato F, Hishiki T, Mimata A, Sakamaki Y, Ichinose S, Hanada K, Muramatsu M, Wakita T, Aizaki H.
    • Journal Title

      J Virol

      Volume: 94 Issue: 23

    • DOI

      10.1128/jvi.01080-20

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Blood group P1 antigen?bearing glycoproteins are functional but less efficient receptors of Shiga toxin than conventional glycolipid-based receptors2020

    • Author(s)
      Morimoto K, Suzuki N, Tanida I, Kakuta S, Furuta Y, Uchiyama Y, Hanada K, Suzuki Y, Yamaji T.
    • Journal Title

      J Biol Chem

      Volume: 295 Issue: 28 Pages: 9490-9501

    • DOI

      10.1074/jbc.ra120.013926

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative characterization of flavivirus production in two cell lines: Human hepatoma-derived Huh7.5.1-8 and African green monkey kidney-derived Vero2020

    • Author(s)
      Kyoko Saito, Masayoshi Fukasawa, Yoshitaka Shirasago, Ryosuke Suzuki, Naoki Osada, Toshiyuki Yamaji, Takaji Wakita, Eiji Konishi, Kentaro Hanada
    • Journal Title

      PLOS ONE

      Volume: 15 Issue: 4 Pages: e0232274-e0232274

    • DOI

      10.1371/journal.pone.0232274

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Preparation of Fluorescent Recombinant Shiga Toxin B Subunit and Its Application to Flow Cytometry2020

    • Author(s)
      Yamaji T
    • Journal Title

      Methods Mol Biol,

      Volume: 2132 Pages: 463-474

    • DOI

      10.1007/978-1-0716-0430-4_45

    • ISBN
      9781071604298, 9781071604304
    • Related Report
      2020 Research-status Report
  • [Journal Article] A CRISPR Screen Using Subtilase Cytotoxin Identifies SLC39A9 as a Glycan-Regulating Factor2019

    • Author(s)
      Yamaji Toshiyuki、Hanamatsu Hisatoshi、Sekizuka Tsuyoshi、Kuroda Makoto、Iwasaki Norimasa、Ohnishi Makoto、Furukawa Jun-ichi、Yahiro Kinnosuke、Hanada Kentaro
    • Journal Title

      iScience

      Volume: 15 Pages: 407-420

    • DOI

      10.1016/j.isci.2019.05.005

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chlamydia trachomatis‐infected human cells convert ceramide to sphingomyelin without sphingomyelin synthases 1 and 22019

    • Author(s)
      Tachida Yuriko、Kumagai Keigo、Sakai Shota、Ando Shuji、Yamaji Toshiyuki、Hanada Kentaro
    • Journal Title

      FEBS Letters

      Volume: 594 Issue: 3 Pages: 519-529

    • DOI

      10.1002/1873-3468.13632

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] 哺乳動物のセラミド関連脂質生合成2019

    • Author(s)
      山地俊之
    • Journal Title

      セラミド研究の新展開~基礎から応用へ~

      Volume: 0 Pages: 22-31

    • Related Report
      2019 Research-status Report
  • [Journal Article] A CRISPR screen identifies LAPTM4A and TM9SF proteins as glycolipid-regulating factors2019

    • Author(s)
      Yamaji T, Sekizuka T, Tachida Y, Sakuma C, Morimoto K, Kuroda M, Hanada K
    • Journal Title

      iScience

      Volume: 11 Pages: 409-424

    • DOI

      10.1016/j.isci.2018.12.039

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nanotubes connecting B lymphocytes: High impact of differentiation-dependent lipid composition on their growth and mechanics2017

    • Author(s)
      Toth EA, Oszvald A, Peter M, Balogh G, Osteikoetxea- Molnar A, Bozo T, Szabo-Meleg E, Nyitrai M, Derenyi I, Yamaji T, Hanada K, Vigh L, Matko J
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1862 Issue: 9 Pages: 991-1000

    • DOI

      10.1016/j.bbalip.2017.06.011

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] ゲノム編集法を用いた生体膜脂質や糖鎖の代謝及び感染症研究2021

    • Author(s)
      山地俊之
    • Organizer
      東京医科歯科大学大学院特別セミナー
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 8.Modulation of Zika virus replication via glucosylceramide 1 synthase and glycosphingolipids2021

    • Author(s)
      Brown M, Cerone J, Ogbamikael S, Yager E, Yamaji T, Barroso M, Hanada K, Konan K
    • Organizer
      Eastern Society for Pediatric Research Annual Meeting ESPR2021
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Application of genome editing technologies to studies on sphingolipid biology2021

    • Author(s)
      山地俊之
    • Organizer
      第141回日本薬学会
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 小胞体-ゴルジ体連携ゾーンにおけるCERTの機能制御に関する因子の探索2020

    • Author(s)
      水池彩、酒井祥太、山地俊之、花田賢太郎
    • Organizer
      第62回脂質生化学会
    • Related Report
      2020 Research-status Report
  • [Presentation] ヒト脳脊髄液にはガラビオシルセラミド(Gb2)が存在する2020

    • Author(s)
      秋山央子、井出三津子、山地俊之、植田晃広、新美芳樹、武藤多津郎、上口裕之、平林義雄
    • Organizer
      第62回脂質生化学会
    • Related Report
      2020 Research-status Report
  • [Presentation] スフィンゴ脂質のC型肝炎ウイルス複製における役割の解析2020

    • Author(s)
      相崎英樹、青柳東代、若江亨祥、有田峰太郎、渡士幸一、鈴木亮介、熊谷圭悟、山地俊之、深澤征義、村松正道、脇田隆字、花田賢太郎
    • Organizer
      第62回脂質生化学会
    • Related Report
      2020 Research-status Report
  • [Presentation] P1糖鎖エピトープを有する糖タンパク質の志賀毒素受容体としての機能解析2020

    • Author(s)
      森本貫太、鈴木詔子、谷田以誠、角田宗一郎、古田陽子、内山安男、花田賢太郎、鈴木佑典、山地俊之
    • Organizer
      第39回日本糖質学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] ヒトマクロファージの免疫応答における極長鎖脂肪酸鎖を含むスフィンゴ脂質の役割2020

    • Author(s)
      花房慶、中山仁志、山地俊之、岩渕和久
    • Organizer
      第39回日本糖質学会年会
    • Related Report
      2020 Research-status Report
  • [Presentation] ゲノムワイドスクリーニングによって同定された糖鎖発現制御因子の解析2019

    • Author(s)
      山地俊之、 関塚剛史、花松久寿、黒田誠、古川潤一、八尋錦之助、花田賢太郎
    • Organizer
      第38回日本糖質学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Genome-wide CRISPR screens identify novel glycan regulators2019

    • Author(s)
      Toshiyuki Yamaji, Tsuyoshi Sekizuka, Hisatoshi Hanamatsu, Makoto Kuroda, Jun-ichi Furukawa, Kinnosuke Yahiro, Kentaro Hanada
    • Organizer
      25th International Symposium on Glycoconjugates
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research
  • [Presentation] Application of genome editing technologies to studies on sphingolipid and glycan metabolisms2019

    • Author(s)
      Toshiyuki Yamaji
    • Organizer
      1st Japan-Europe Workshop on Glycosphingolipids and Membrane homeostatsis
    • Related Report
      2019 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] P1糖鎖エピトープを有した糖タンパク質の志賀毒素受容体としての機能解析2019

    • Author(s)
      森本貫太、鈴木詔子、花田賢太郎、鈴木佑典、山地俊之
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Research-status Report
  • [Presentation] CRISPRライブラリーを用いたSubtilase cytotoxinによる致死に耐性を示す細胞の樹立と受容体認識機構の解明2019

    • Author(s)
      八尋錦之助、大西真、花田賢太郎、山地俊之
    • Organizer
      第23回腸管出血性大腸菌研究会
    • Related Report
      2019 Research-status Report
  • [Presentation] ゲノムワイドCRISPR/Cas9スクリーニングシステムのin silico解析webアプリケーション2019

    • Author(s)
      関塚剛史、佐久間智理、糸川健太郎、花田賢太郎、黒田誠、山地俊之
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] 糖鎖結合性細菌毒素を用いたゲノムワイドCRISPRスクリーニング2019

    • Author(s)
      山地俊之
    • Organizer
      第93回日本細菌学会総会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] Chlamydia trachomatisは細胞内寄生に宿主のスフィンゴミエリン生合成を必要としない2018

    • Author(s)
      立田由里子, 熊谷圭悟, 酒井祥太, 山地俊之, 花田賢太郎
    • Organizer
      第60回日本脂質生化学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Chlamydia trachomatisは細胞内寄生に宿主のスフィンゴミエリン生合成を必要としない2018

    • Author(s)
      立田由里子, 熊谷圭悟, 酒井祥太, 山地俊之, 花田賢太郎
    • Organizer
      第11回セラミド研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] 遺伝子編集法を用いた宿主細胞因子の探索及び糖鎖生合成研究への応用2018

    • Author(s)
      山地俊之
    • Organizer
      第16回糖鎖科学コンソーシアムシンポジウム
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ゲノム編集法を用いた糖鎖・脂質代謝関連因子の探索2018

    • Author(s)
      山地俊之
    • Organizer
      第2回オルガネラゾーン研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Genome-Wide CRISPR Screening for Identifying Genes Involved in Glycolipid Metabolism2018

    • Author(s)
      Yamaji T, Hanada K
    • Organizer
      Gordon Research Conference on Glycolipid and Sphingolipid Biology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] CRISPRライブラリーを用いた志賀毒素の細胞障害作用に対するゲノムワイドスクリーニング2017

    • Author(s)
      山地俊之、立田由里子、佐久間智理、関塚剛史、黒田誠、花田賢太郎
    • Organizer
      第59回日本脂質生化学会
    • Related Report
      2017 Research-status Report
  • [Presentation] CRISPRライブラリーを用いた糖脂質生合成に影響を及ぼす因子の探索2017

    • Author(s)
      山地俊之、関塚剛史、佐久間智理、立田由里子、黒田誠、花田賢太郎
    • Organizer
      2017年度生命科学系学会合同年次大会 第40回日本分子生物学会年会・第90回日本生化学会大会
    • Related Report
      2017 Research-status Report
    • Invited

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Published: 2017-04-28   Modified: 2023-01-30  

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