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Search for important sites in protein structure formation and elucidation of selection factors in their evolution

Research Project

Project/Area Number 17K07368
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionKyoto Prefectural University

Principal Investigator

Takano Kazufumi  京都府立大学, 生命環境科学研究科, 教授 (40346185)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2019: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsタンパク質 / 立体構造 / アミノ酸変異 / 配列アライメント / フォールディング / 進化
Outline of Final Research Achievements

In this work, in order to get broader knowledge on the relationship between amino acid substitutions and protein function/structure, we attempted to extract ‘mutable and fatal sites’ by ‘random mutation’ using ‘stable hyperthermophilic proteins’. The proteins applied were an esterase from Sulfolobus tokodaii (Sto-Est) and a subtilisin from Thermococcus kodakarensis (Tk-Sub). These proteins have been well studied for their function, structure and stability, and have also been used in random mutation experiments; we have extensive published and unpublished data on the activity and sequence for random mutations of these proteins. This study has revealed a portion of the properties at conserved sites that can be mutated and non-conserved sites that are not suitable for mutation.

Academic Significance and Societal Importance of the Research Achievements

今日、タンパク質の構造構築メカニズムに関して、計算機を用いた研究が増加してきているが、実験を通して得られる知見もまだまだ多くある。特に本研究のような網羅的解析が有効である。本研究は、研究代表者がこれまで行ってきた個々のタンパク質の安定性・フォールディング研究から構造構築網羅的解析、物性と進化の関係も含んだ新たな研究を展開するものである。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (16 results)

All 2020 2019 2018 2017

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (12 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Highly active enzymes produced by directed evolution with stability-based selection2020

    • Author(s)
      Kurahashi, R., Tanaka, S.-i.. & Takano, K.
    • Journal Title

      Enzyme and Microbial Technology

      Volume: - Pages: 109626-109626

    • DOI

      10.1016/j.enzmictec.2020.109626

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Activity-stability trade-off in random mutant proteins2019

    • Author(s)
      Kurahashi Ryo、Tanaka Shun-ichi、Takano Kazufumi
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 128 Issue: 4 Pages: 405-409

    • DOI

      10.1016/j.jbiosc.2019.03.017

    • NAID

      40022037135

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] The direction of protein evolution is destined by the stability2018

    • Author(s)
      Ota, N., Kurahashi, R., Sano, S. & Takano, K.
    • Journal Title

      Biochimie

      Volume: 150 Pages: 100-109

    • DOI

      10.1016/j.biochi.2018.05.006

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Protein Evolution is Potentially Governed by Protein Stability: Directed Evolution of an Esterase from the Hyperthermophilic Archaeon Sulfolobus tokodaii2018

    • Author(s)
      Kurahashi, R., Sano, S. & Takano, K.
    • Journal Title

      Journal of Molecular Evolution

      Volume: 86 Issue: 5 Pages: 283-292

    • DOI

      10.1007/s00239-018-9843-y

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] アミノ酸変異が及ぼすタンパク質機能への影響と配列保存度の関係2019

    • Author(s)
      水谷颯、倉橋亮、田中俊一、高野和文
    • Organizer
      日本農芸化学会関西支部第507回例会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ランダム変異浮動におけるタンパク質の活性と安定性のトレードオフ2019

    • Author(s)
      倉橋亮、田中俊一、高野和文
    • Organizer
      第19回日本蛋白質科学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Exploration of an Efficient Way to Obtain High Activity Protein by Stability Selection2019

    • Author(s)
      R. Kurahashi, S.-i. Tanaka, K. Takano
    • Organizer
      Thermophiles 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] タンパク質進化の方向を決定づける安定性2018

    • Author(s)
      太田夏子、倉橋亮、佐野智、高野和文
    • Organizer
      第18回日本蛋白質科学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Protein stability potentially governing protein evolution2018

    • Author(s)
      R. Kurahashi, S. Tanaka, S. Sano, H. Matsumura, K. Takano
    • Organizer
      SMBE (Society of Molecular Biology & Evolution) 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] タンパク質進化の命運を握る安定性2018

    • Author(s)
      倉橋亮、太田夏子、高野和文
    • Organizer
      日本進化学会第20回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Empirical search for important sites in protein structures2018

    • Author(s)
      H. Mizutani, R. Kurahashi, S. Tanaka, K. Takano
    • Organizer
      JSBBA KANSAI 5th Student Forum
    • Related Report
      2018 Research-status Report
  • [Presentation] アミノ酸変異が及ぼすタンパク質機能への影響と配列保存度の関係2018

    • Author(s)
      水谷颯、倉橋亮、田中俊一、高野和文
    • Organizer
      日本農芸化学会関西支部第507回例会
    • Related Report
      2018 Research-status Report
  • [Presentation] タンパク質進化を潜在的に支配する安定性~タンパク質工学への応用に向けて~2018

    • Author(s)
      倉橋亮、佐野智、高野和文
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Research-status Report
  • [Presentation] タンパク質の進化過程における安定性の役割2017

    • Author(s)
      太田夏子、倉橋亮、佐野智、高野和文
    • Organizer
      第17回日本蛋白質科学会
    • Related Report
      2017 Research-status Report
  • [Presentation] タンパク質進化を潜在的に支配する安定性2017

    • Author(s)
      倉橋亮、佐野智、高野和文
    • Organizer
      日本進化学会第19回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] タンパク質進化の配列空間探索に及ぼす安定性の影響2017

    • Author(s)
      太田夏子、倉橋亮、佐野智、高野和文
    • Organizer
      2017年度生命科学系学会合同年次大会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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