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Recognition mechanism of carrier protein by acyltransferase

Research Project

Project/Area Number 17K07747
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

Miyanaga Akimasa  東京工業大学, 理学院, 助教 (10623126)

Project Period (FY) 2017-04-01 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords結晶構造解析 / ポリケタイド / 微生物酵素 / タンパク質間相互作用 / クロスリンク / ポリケタイド合成酵素
Outline of Final Research Achievements

Acyltransferases (ATs) are key determinants of building block specificity in polyketide biosynthesis. Despite the importance of protein-protein interactions between AT and carrier protein (CP) during the acyltransfer reaction, the mechanism of CP recognition by AT had been poorly understood. In this study, we chemically synthesized pantetheineamide-type cross-linking probe to capture transient AT-CP complex in its functional state, and successfully determined the crystal structure of AT-CP complex of disorazole polyketide synthase (PKS). The crystal structure of the disorazole AT-CP complex provides the first detailed insights into the protein-protein interactions between a trans-acting AT and CP in trans-AT PKS assembly lines. We also showed that the pantetheineamide-type cross-linking probe is useful for structural characterization of adenylation domain-CP complexes.

Academic Significance and Societal Importance of the Research Achievements

ポリケタイド化合物の生合成において、アシル基転移酵素はポリケタイド骨格の構成単位となるアシル基の種類を決定づける重要な酵素である。本研究では、ポリケタイド合成酵素におけるアシル基転移酵素とキャリアータンパク質の間のタンパク質間相互作用の詳細を明らかにすることに成功した。得られた構造情報を利用することにより、非天然型ポリケタイド化合物の微生物生産を目的とした合理的なポリケタイド合成酵素の改変が期待できる。

Report

(5 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (16 results)

All 2021 2020 2019 2018 2017

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results)

  • [Journal Article] Structural Characterization of Complex of Adenylation Domain and Carrier Protein by Using Pantetheine Cross-Linking Probe2020

    • Author(s)
      Miyanaga Akimasa、Kurihara Shohei、Chisuga Taichi、Kudo Fumitaka、Eguchi Tadashi
    • Journal Title

      ACS Chemical Biology

      Volume: 15 Issue: 7 Pages: 1808-1812

    • DOI

      10.1021/acschembio.0c00403

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Engineered Aryl Acid Adenylation Domain with an Enlarged Substrate Binding Pocket2019

    • Author(s)
      Ishikawa, F., Miyanaga, A., Kitayama, H., Nakamura, S., Nakanishi, I., Kudo, F., Eguchi, T., Tanabe, G.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 58 Issue: 21 Pages: 6906-6910

    • DOI

      10.1002/anie.201900318

    • Related Report
      2019 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structural Basis of Protein-Protein Interactions between a trans-Acting Acyltransferase and Acyl Carrier Protein in Polyketide Disorazole Biosynthesis2018

    • Author(s)
      Miyanaga Akimasa、Ouchi Risako、Ishikawa Fumihiro、Goto Ena、Tanabe Genzoh、Kudo Fumitaka、Eguchi Tadashi
    • Journal Title

      Journal of the American Chemical Society

      Volume: 140 Issue: 25 Pages: 7970-7978

    • DOI

      10.1021/jacs.8b04162

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Protein-protein interactions in polyketide synthase-nonribosomal peptide synthetase hybrid assembly lines2018

    • Author(s)
      Miyanaga Akimasa、Kudo Fumitaka、Eguchi Tadashi
    • Journal Title

      Natural Product Reports

      Volume: 35 Issue: 11 Pages: 1185-1209

    • DOI

      10.1039/c8np00022k

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Structure and function of polyketide biosynthetic enzymes: various strategies for production of structurally diverse polyketides2017

    • Author(s)
      Miyanaga Akimasa
    • Journal Title

      Biosci Biotechnol Biochem.

      Volume: 81 Issue: 12 Pages: 2227-2236

    • DOI

      10.1080/09168451.2017.1391687

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] マクロラクタム抗生物質ヒタチマイシン生合成におけるアデニル化酵素とキャリアタンパク質間相互認識機構2021

    • Author(s)
      千菅太一、宮永顕正、栗原将平、安達成彦、川崎政人、守屋俊夫、千田俊哉、工藤史貴、江口正
    • Organizer
      2020年度量子ビームサイエンスフェスタ
    • Related Report
      2020 Annual Research Report
  • [Presentation] ビセニスタチン生合成におけるアシル基転移酵素VinKとアシルキャリアタンパク質間の相互作用解析2020

    • Author(s)
      川田浩一、千菅太一、宮永顕正、工藤史貴、江口正
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Research-status Report
  • [Presentation] マクロラクタム抗生物質ヒタチマイシン生合成におけるアデニル化酵素とアシルキャリアプロテインの相互作用の解析2020

    • Author(s)
      栗原将平、宮永顕正、工藤史貴、江口正
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Research-status Report
  • [Presentation] Structural basis of protein-protein interactions between acyltransferase and acyl carrier protein in trans-AT polyketide synthases2019

    • Author(s)
      宮永顕正
    • Organizer
      2nd China-Japan Joint Symposium on Natural Product Biosynthesis
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] ジソラゾール生合成におけるアシル基転移酵素とアシルキャリアプロテイン間の相互作用解析2019

    • Author(s)
      後藤絵菜、大内理紗子、宮永顕正、工藤史貴、江口正
    • Organizer
      日本化学会第99春季年会
    • Related Report
      2018 Research-status Report
  • [Presentation] ポリケタイド生合成におけるアシルキャリアータンパク質認識機構の解析2018

    • Author(s)
      宮永顕正
    • Organizer
      第19回酵素応用シンポジウム
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Cross-linking reaction to investigate protein-protein interaction in polyketide synthases2018

    • Author(s)
      後藤絵菜、大内理紗子、宮永顕正、工藤史貴、江口正
    • Organizer
      The 3rd A3 Foresight Symposium on "Chemical & Synthetic Biology of Natural Products"
    • Related Report
      2018 Research-status Report
  • [Presentation] ポリケチド生合成におけるアシル基転移酵素とアシルキャリアタンパク質のクロスリンク反応の検討2018

    • Author(s)
      大内理紗子、石川文洋、後藤絵菜、木村真希、宮永顕正、田邉元三、工藤史貴、江口正
    • Organizer
      日本化学会第98春季年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 放線菌が生産するポリケタイド化合物のユニークな生合成マシナリー2017

    • Author(s)
      宮永顕正
    • Organizer
      第4回天然物化学研究会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] ポリケタイド化合物の分子多様性を生み出す生合成酵素の構造機能研究2017

    • Author(s)
      宮永顕正
    • Organizer
      日本農芸化学会 関東支部2017年度第1回支部例会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Structural analysis of macrolactam biosynthetic enzymes2017

    • Author(s)
      宮永顕正
    • Organizer
      The 2nd A3 Foresight Symposium on "Chemical & Synthetic Biology of Natural Products"
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2017-04-28   Modified: 2022-01-27  

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