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Understanding and quantification of the solubility of cellulose investigated by molecular dynamics simulation

Research Project

Project/Area Number 17K07873
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Wood science
Research InstitutionYokohama National University

Principal Investigator

Ueda Kazuyoshi  横浜国立大学, 大学院工学研究院, 名誉教授 (40223458)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2019: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2018: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2017: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsセルロース / 分子動力学シミュレーション / 溶解自由エネルギー / 溶媒和自由エネルギー / セルロース誘導体 / 溶解性
Outline of Final Research Achievements

Cellulose is one of the most abundant renewable resources and the research for the application of it as a future energy and new materials has been performing for long years. However, there still exist some unsolved problems even in the basic properties of it. One of such problem is the solubility of cellulose in water. In this work,molecular dynamics simulation of oligomer cellulose had been performed and the dissolution free energy of cellulose oligomers in water were evaluated.
The results well reproduced the experimental behavior of the solubility of the cellulose oligomers in water. The reason of the low solubility of cellulose oligomers in water was attributed to the large contribution of the sublimation free energy compared to that of solvation free energy. That is, the dissociation of the cellulose from the amorphous solid state is the key for the dissolution of cellulose in water.

Academic Significance and Societal Importance of the Research Achievements

セルロースは再生、持続可能な資源であるが、実用化に向けては溶媒などに対する溶解性が低い問題点がある。本研究では、セルロースのオリゴマーを用いて自由エネルギー計算による溶解性の定量化方法の確立と、溶解機構の解明を行った。溶解性はセルロース化学の基礎的な問題でありながら、その機構や溶解性の熱力学的評価は未だ解明されていなかった問題であり、溶解自由エネルギーにより溶解性が精度よく評価できたことは、今後のセルロース科学の基盤情報を与えるものとして学術的意義があるのみならず、今後のセルロースの溶解性向上を検討するうえで、有益な指針を示すものと考える。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (25 results)

All 2020 2019 2018 2017

All Journal Article (21 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 21 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] 分子模型キットからのコンピュータ解析用3次元構造ファイル取得を支援するMm2cMLソフトウェアの開発2020

    • Author(s)
      矢部誠、陳 佳韻,、上田一義、武田穣
    • Journal Title

      J. Comput. Chem. Jpn.

      Volume: in press

    • NAID

      130007872627

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterization of cellulose nanofibers isolated from spent coffee grounds and their composite films with poly(vinyl alcohol): a new non-wood source2020

    • Author(s)
      Noriko Kanai, Takumi Honda, Naoki Yoshihara, Toshiyuki Oyama, Akira Naito, Kazuyoshi Ueda, Izuru Kawamura*
    • Journal Title

      Cellulose

      Volume: 27 Issue: 9 Pages: 5017-5028

    • DOI

      10.1007/s10570-020-03113-w

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of insertion of bathocuproine buffer layer at grating-structured cathode-organic-layer interface in bulk-heterojunction solar cells2020

    • Author(s)
      Masaru Sakomura, Yuya Yokokura, Yusuke Takagi and Kazuyoshi Ueda
    • Journal Title

      AIP Advances

      Volume: 10 Issue: 1 Pages: 015144-015144

    • DOI

      10.1063/1.5129351

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] β-diketiminato-based pincer-type nickel(II) complex: Synthesis and catalytic performance in the cross-coupling reaction of aryl fluorides with aryl Grignard reagents2019

    • Author(s)
      Nobutaka Kurisu, Erika Asano, Yuki Hatayama, Youji Kurihara, Toru Hashimoto, Kei Funatsu, Kazuyoshi Ueda, Yoshitaka Yamaguchi
    • Journal Title

      European Journal of Inorganic Chemistry

      Volume: - Issue: 1 Pages: 126-133

    • DOI

      10.1002/ejic.201801179

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DFT study of the influence of acetyl groups of cellulose acetate on its intrinsic birefringence and wavelength dependence2019

    • Author(s)
      Hayakawa Daichi、Gouda Hiroaki、Hirono Shuichi、Ueda Kazuyoshi
    • Journal Title

      Carbohydrate Polymers

      Volume: 207 Pages: 122-130

    • DOI

      10.1016/j.carbpol.2018.11.074

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of PolyParGen Software to Facilitate the Determination of Molecular Dynamics Simulation Parameters for Polymers2019

    • Author(s)
      Makoto Yabe, Kazuki Mori, Kazuyoshi Ueda, and Minoru Takeda
    • Journal Title

      Journal of Computer Chemistry, Japan -International Edition

      Volume: 5 Issue: 0 Pages: n/a

    • DOI

      10.2477/jccjie.2018-0034

    • NAID

      130007611638

    • ISSN
      2189-048X
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A comparative study of interactions of antimicrobial peptides L- and D-phenylseptin with 1,2-dimyristoyl-sn-glycero-3-phosphocholine2019

    • Author(s)
      Batsaikhan Mijiddorj, Yuta Matsuo, Hisako Sato, Kazuyoshi Ueda, Izuru Kawamura*
    • Journal Title

      Applied Science

      Volume: 9 Issue: 13 Pages: 2601-2601

    • DOI

      10.3390/app9132601

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Synthesis and reactivity of [M(η3-allyl)(η2-amidinato)(CO)2(phosphonium ylide)] (M = Mo, W): Investigation of the ligand properties of phosphonium ylides2018

    • Author(s)
      Takaki Daichi、Ogata Kenichi、Kurihara Youji、Ueda Kazuyoshi、Hashimoto Toru、Yamaguchi Yoshitaka
    • Journal Title

      Inorganica Chimica Acta

      Volume: 471 Pages: 310-315

    • DOI

      10.1016/j.ica.2017.11.019

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] The role of d - allo -isoleucine in the deposition of the anti- Leishmania peptide bombinin H4 as revealed by 31 P solid-state NMR, VCD spectroscopy, and MD simulation2018

    • Author(s)
      Mijiddorj Batsaikhan、Kaneda Shiho、Sato Hisako、Kitahashi Yuki、Javkhlantugs Namsrai、Naito Akira、Ueda Kazuyoshi、Kawamura Izuru
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

      Volume: 1866 Issue: 7 Pages: 789-798

    • DOI

      10.1016/j.bbapap.2018.01.005

    • NAID

      120006649291

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Acetylacetonato-based pincer-type nickel(II) complexes: Synthesis and catalysis in cross-couplings of aryl chlorides with arylmagnesium bromides2018

    • Author(s)
      Erika Asano, Yuki Hatayama, Nobutaka Kurisu, Youji Kurihara, Shinji Ishihara, Toru Hashimoto, Kazuyoshi Ueda, Hirotaka Nagao, Yoshitaka Yamaguchi
    • Journal Title

      Dalton Transactions

      Volume: 47 Issue: 24 Pages: 8003-8012

    • DOI

      10.1039/c8dt01295d

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Retinal configuration of ppR intermediates revealed by photo-irradiation solid-state NMR and DFT2018

    • Author(s)
      Yoshiteru Makino, Izuru Kawamura, Takashi Okitsu, Akimori Wada, Naoki Kamo, Yuki Sudo, Kazuyoshi Ueda, Akira Naito
    • Journal Title

      Biophys. J

      Volume: 115 Issue: 1 Pages: 72-83

    • DOI

      10.1016/j.bpj.2018.05.030

    • NAID

      120006698118

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Solid-state NMR characterization of the structure of self-assembled Ile-Phe-OH2018

    • Author(s)
      Izuru Kawamura, Hiroki Shirakata and Yumi Ozawa, Batsaikhan Mijiddorj, Kazuyoshi Ueda
    • Journal Title

      Magnetchemistry

      Volume: 4 Issue: 3 Pages: 30-30

    • DOI

      10.3390/magnetochemistry4030030

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Achiral molecular recognition of aromatic position isomers by polysaccharide-based CSPs in relation to chiral recognition2017

    • Author(s)
      Tohru Shibata, Satoshi Shinkura, Atsushi. Ohnishi, Kazuyoshi Ueda
    • Journal Title

      Molecules

      Volume: 22 Issue: 1 Pages: 38-38

    • DOI

      10.3390/molecules22010038

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Discrimination between naphthacene and triphenylene using cellulose tris(4-methylbenzoate) and cellulose tribenzoate : A computational study2017

    • Author(s)
      Yusuke Murakami, Tohru Shibata, and Kazuyoshi Ueda
    • Journal Title

      Carbohydr. Res.

      Volume: 439 Pages: 35-43

    • DOI

      10.1016/j.carres.2017.01.003

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dynamic structure and orientation of melittin bound to acidic lipid bilayers, as revealed by solid-state NMR and molecular dynamic simulation2017

    • Author(s)
      K. Norisada, N. Javkhlantugs, D. Mishima, I. Kawamura, H. Saito, K. Ueda, A. Naito
    • Journal Title

      J. Phys. Chem. B.

      Volume: 121 Issue: 8 Pages: 1802-1811

    • DOI

      10.1021/acs.jpcb.6b11207

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Application of the fragment molecular orbital method analysis to fragment-based drug discovery of BET ( bromodomain and extra-terminal proteins ) inhibitors2017

    • Author(s)
      Motoyasu Ozawa, Tomonaga Ozawa, and Kazuyoshi Ueda
    • Journal Title

      Journal of Molecular Graphics and Modelling

      Volume: 74 Pages: 73-82

    • DOI

      10.1016/j.jmgm.2017.02.013

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Molecular dynamics simulation of cellulose-coated oil-in-water emulsions2017

    • Author(s)
      H. Miyamoto, D. M. Rein, K. Ueda, C. Yamane and Y. Cohen
    • Journal Title

      Cellulose

      Volume: 印刷中 Issue: 7 Pages: 2699-2711

    • DOI

      10.1007/s10570-017-1290-1

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Evaluation of the hydrogen bond networks in cellulose Ib and II crystals using density functional theory and Car-Parrinello molecular dyanamics2017

    • Author(s)
      Daichi Hayakawa, Yoshiharu Nishiyama, Karim Mazeau and Kazuyoshi Ueda
    • Journal Title

      Carbohydr. Res.

      Volume: 449 Pages: 103-113

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The role of CH/πinteractions in the high affinity binding of streptavidin and biotin2017

    • Author(s)
      Motoyasu Ozawa, Tomonaga Ozawa, Motohiro Nishio and Kazuyoshi Ueda
    • Journal Title

      Journal of Molecular Graphics and Modelling

      Volume: 75 Pages: 117-124

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Control of indium tin oxide anode work function modified using Langmuir-Blodgett monolayer for high-efficiency organic photovoltaics2017

    • Author(s)
      Yuya Yokokura, Tomomichi Dogase, Tatsuki Shinbo, Yuya Nakayashiki, Yusuke Takagi, Kazuyoshi Ueda, Khayankhyarvaa Sarangerel, Byambasuren Delgertsetseg, Chimed Ganzorig, and Masaru Sakomura
    • Journal Title

      AIP Advances

      Volume: 7 Issue: 8 Pages: 085321-085321

    • DOI

      10.1063/1.4993693

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Development of o2p Software to Facilitate the Determination of Molecular Dynamics Simulation Parameters forMacromolecules with Repeating Units2017

    • Author(s)
      矢部 誠、園部 智彩、上田 一義、武田 穣
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 16 Issue: 3 Pages: 63-69

    • DOI

      10.2477/jccj.2017-0013

    • NAID

      130006108680

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] Free energy calculation of the solubility of cellulose oligomers in water : II2018

    • Author(s)
      Yutaka Matsubara, Kazuyoshi Ueda
    • Organizer
      256th ACS National Meeting
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structural Characterization of Cellulose Nanofibers Prepared from Spent Coffee Grounds2018

    • Author(s)
      Noriko Kanai, , Kazuyoshi Ueda, Izuru kawamura
    • Organizer
      Applied Nanotechnology and Nanoscience International Conference (ANNIC 2018)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Free energy calculation of the solubility of cellulose oligomers in water2017

    • Author(s)
      Kazuyoshi Ueda, Yutaka Matsubara
    • Organizer
      254th ACS National Meeting
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] ER法を用いた自由エネルギー計算によるセルロースの溶解性の検討2017

    • Author(s)
      松原 寛,上田 一義
    • Organizer
      セルロース学会第24回年次大会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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