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Structural study of the influenza virus genome RNA and development of anti-flu medicines

Research Project

Project/Area Number 17K08248
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical pharmacy
Research InstitutionSophia University

Principal Investigator

Jiro Kondo  上智大学, 理工学部, 准教授 (10546576)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2017: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsX線結晶解析 / ドラッグデザイン / インフルエンザウイルス / 抗ウイルス薬 / アミノグリコシド / インフルエンザ / RNA / ウィルス / 核酸 / 感染症 / 薬学 / 分子認識
Outline of Final Research Achievements

The purpose of this study was to design and develop drugs for the treatment of influenza virus infection. We first revealed the three-dimensional structures of eight segmented single-stranded influenza virus genomic RNAs (vRNA) and their counter-stranded RNAs (cRNA) using X-ray crystallography. The obtained structural snapshots were then connected to create movies to observe the dynamic structural changes of vRNA and cRNA. Furthermore, we analyzed the binding mode of aminoglycosides to vRNA, cRNA and the ribosomal RNA switch. We designed drug candidates that bind to vRNA and cRNA based on the three-dimensional structural information obtained in this study.

Academic Significance and Societal Importance of the Research Achievements

インフルエンザウイルスのゲノムRNA(vRNA)およびその対鎖RNA(cRNA)の立体構造およびその動的構造変化を高分解能で詳しく観察し、インフルエンザウイルス感染症治療薬のデザインのための立体構造情報を取得することに成功した。この構造情報は近日中にProtein Data Bankで公開され、全世界で利用可能になる。また、本研究ではRNAの結晶化と構造解析技術に進展が見られた。現在、RNAを標的とした低分子医薬品や核酸医薬品(中分子医薬品)の開発の機運が高まっており、本研究で確立された実験手法は幅広く活用されると期待できる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (22 results)

All 2019 2018 2017 Other

All Int'l Joint Research (8 results) Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (10 results) (of which Int'l Joint Research: 8 results)

  • [Int'l Joint Research] モントリオール大学(カナダ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] ストラスブール大学(フランス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] モントリオール大学(カナダ)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] テクニオン・イスラエル工科大学(イスラエル)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] セント・アンドルーズ大学(英国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] モントリオール大学(カナダ)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] テクニオン・イスラエル工科大学(イスラエル)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] セント・アンドルーズ大学(英国)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Structural Bases for the Fitness Cost of the Antibiotic-Resistance and Lethal Mutations at Position 1408 of 16S rRNA2019

    • Author(s)
      Kondo Jiro、Koganei Mai
    • Journal Title

      Molecules

      Volume: 25 Issue: 1 Pages: 159-159

    • DOI

      10.3390/molecules25010159

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Conformational adaptation of UNCG loops upon crowding2019

    • Author(s)
      Meyer Melanie、Walbott Helene、Olieric Vincent、Kondo Jiro、Costa Maria、Masquida Benoit
    • Journal Title

      RNA

      Volume: 25 Issue: 11 Pages: 1522-1531

    • DOI

      10.1261/rna.072694.119

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure-Based Design of a Eukaryote-Selective Antiprotozoal Fluorinated Aminoglycoside2018

    • Author(s)
      Kanazawa Hiroki、Saavedra Oscar M.、Maianti Juan Pablo、Young Simon A.、Izquierdo Luis、Smith Terry K.、Hanessian Stephen、Kondo Jiro
    • Journal Title

      ChemMedChem

      Volume: 13 Issue: 15 Pages: 1541-1548

    • DOI

      10.1002/cmdc.201800166

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A structural basis for the antibiotic resistance conferred by an N1-methylation of A1408 in 16S rRNA2017

    • Author(s)
      Kanazawa Hiroki、Baba Fumika、Koganei Mai、Kondo Jiro
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 21 Pages: 12529-12535

    • DOI

      10.1093/nar/gkx882

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Structural study of the kink-turn motif2019

    • Author(s)
      Miki Nagashima, Jiro Kondo
    • Organizer
      ISNAC2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] X-Ray analyses of natural and modified RNA kink-turn motifs2019

    • Author(s)
      Miki Nagashima, Jiro Kondo
    • Organizer
      AsCA2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural study of the bulged-G motif observed in functional RNAs2019

    • Author(s)
      Sao Sekiguchi, Jiro Kondo
    • Organizer
      AsCA2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural study of the GNRA tetraloop and its receptor motif observed in functional RNAs2019

    • Author(s)
      Asaki Hayasaka, Jiro Kondo
    • Organizer
      AsCA2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] X-Ray analyses of the ribosomal RNA A site molecular switch with fluorescent nucleobase 2-aminopurine2019

    • Author(s)
      Kotomi Ishikawa, Jiro Kondo
    • Organizer
      AsCA2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リボソームRNA分子スイッチの立体構造に与える銀・水銀の影響の解析2018

    • Author(s)
      長嶋未来、鈴木千晴、廿樂明里、内田ゆり子、窪寺健太、小野晶、近藤次郎
    • Organizer
      NART Meeting 2018 -未来核酸テクノロジー研究会-
    • Related Report
      2018 Research-status Report
  • [Presentation] リボソームRNA分子スイッチの立体構造に与える銀・水銀イオンの影響の解析2018

    • Author(s)
      長嶋未来、鈴木千晴、廿樂明里、内田ゆり子、窪寺健太、小野晶、近藤次郎
    • Organizer
      日本核酸医薬学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Structure-based design of a eukaryote-selective aminoglycoside2018

    • Author(s)
      Kanazawa Hiroki、Saavedra Oscar M.、Maianti Juan Pablo、Young Simon A.、Izquierdo Luis、Smith Terry K.、Hanessian Stephen、Kondo Jiro
    • Organizer
      ISNAC2018 (The 45th International Symposium on Nucleic Acids Chemistry)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Effects of Hg(II) and Ag(I) on the structure of the rRNA A site molecular switches2018

    • Author(s)
      Miki Nagashima, Chiharu Suzuki, Akari Tsudura, Yuriko Uchida, Kenta Kubodera, Akira Ono, Jiro Kondo
    • Organizer
      ISNAC2018 (The 45th International Symposium on Nucleic Acids Chemistry)
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Crystal structure of the human ribosomal decoding A site in complex with G418 possessing readthrough activity2017

    • Author(s)
      Hiroki Kanazawa、Nao Tsurumi、Jiro Kondo
    • Organizer
      ISNAC2017 (The 44th International Symposium on Nucleic Acids Chemistry)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2017-04-28   Modified: 2022-02-22  

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