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Influence of structural flexibility of drug metabolizing enzyme on ligand recognition

Research Project

Project/Area Number 17K08257
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Physical pharmacy
Research InstitutionMeijo University

Principal Investigator

Oda Akifumi  名城大学, 薬学部, 教授 (50433511)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords薬物代謝酵素 / 分子シミュレーション / 遺伝多型 / タンパク質構造柔軟性 / 酵素 / 薬学
Outline of Final Research Achievements

In this study, static and dynamic structures of drug metabolizing enzymes, such as cytochrome P450 (CYP), dihydropyrimidinase and carboxylesterase, were elucidated by using computer simulations. For these enzymes, several mutants were investigated. The computational results suggest that the structural flexibility plays an important role in the structures of ligand binding pocket and the cofactor binding, and it influences on the enzymatic activity. The structural flexibilities were influenced by only one residue mutation. Even in the CYP family enzymes, dynamic structures of the different molecules were largely different.

Academic Significance and Societal Importance of the Research Achievements

医薬品は体内に入った後、適切に出て行かなければならない。その際に機能するのが薬物代謝酵素であるが、遺伝多型によってその機能には個人差が生じやすい。薬物代謝における個人差は薬効および副作用の個人差に直結するため、遺伝多型が薬物代謝酵素に与える影響を明確にすることは薬物治療の個人差を解明する上で極めて重要である。本研究ではそのような薬物代謝酵素の機能の個人差を分子構造のレベルから解明する上で有用である。特に静的構造が似通っているように見える分子においてもその動的構造が異なることをシミュレーションによって明らかにしており、個人差の影響を最小化するための創薬へとつながりうる成果を得た。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (71 results)

All 2020 2019 2018 2017 Other

All Int'l Joint Research (6 results) Journal Article (35 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 35 results,  Open Access: 17 results,  Acknowledgement Compliant: 1 results) Presentation (29 results) (of which Int'l Joint Research: 13 results,  Invited: 1 results) Remarks (1 results)

  • [Int'l Joint Research] BSUIR(ベラルーシ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Karolinska Institutet(スウェーデン)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Mount Kenya University(ケニア)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Chinese Academy of Sciences(中国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] University of North Carolina/National Cancer Institute(米国)

    • Related Report
      2018 Research-status Report
  • [Int'l Joint Research] China Medical University and Hospital(その他の国・地域)

    • Related Report
      2018 Research-status Report
  • [Journal Article] CYP2D6 genotyping analysis and functional characterization of novel allelic variants in a Ni-Vanuatu and Kenyan population by assessing dextromethorphan O-demethylation activity2020

    • Author(s)
      Gutierrez Rico Evelyn Marie、Kikuchi Aoi、Saito Takahiro、Kumondai Masaki、Hishinuma Eiji、Kaneko Akira、Chan Chim Wai、Gitaka Jesse、Nakayoshi Tomoki、Oda Akifumi、Saito Sakae、Hirasawa Noriyasu、Hiratsuka Masahiro
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 35 Issue: 1 Pages: 89-101

    • DOI

      10.1016/j.dmpk.2019.07.003

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Computational Studies on Water-Catalyzed Mechanisms for Stereoinversion of Glutarimide Intermediates Formed from Glutamic Acid Residues in Aqueous Phase2019

    • Author(s)
      Nakayoshi Tomoki、Fukuyoshi Shuichi、Kato Koichi、Kurimoto Eiji、Oda Akifumi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 20 Issue: 10 Pages: 2410-2410

    • DOI

      10.3390/ijms20102410

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Selective and competitive inhibition of kynurenine aminotransferase 2 by glycyrrhizic acid and its analogues2019

    • Author(s)
      Yoshida Yukihiro、Fujigaki Hidetsugu、Kato Koichi、Yamazaki Kyoka、Fujigaki Suwako、Kunisawa Kazuo、Yamamoto Yasuko、Mouri Akihiro、Oda Akifumi、Nabeshima Toshitaka、Saito Kuniaki
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 10243-10243

    • DOI

      10.1038/s41598-019-46666-y

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ER subtype selectivity of m-carborane-containing phenols: C-alkyl groups on the m-carborane cage enhance ERα selectivity2019

    • Author(s)
      Ohta Kiminori、Ogawa Takumi、Kato Koichi、Oda Akifumi、Endo Yasuyuki
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 29 Issue: 16 Pages: 2290-2293

    • DOI

      10.1016/j.bmcl.2019.06.025

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three dimensional structures of putative, primitive proteins to investigate the origin of homochirality2019

    • Author(s)
      Oda Akifumi、Nakayoshi Tomoki、Kato Koichi、Fukuyoshi Shuichi、Kurimoto Eiji
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 11594-11594

    • DOI

      10.1038/s41598-019-48134-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Saccharomyces cerevisiae Strain Pf-1, Isolated from Prunus mume2019

    • Author(s)
      Kanamasa Shin、Yamaguchi Daiki、Machida Chiyoko、Fujimoto Tsukasa、Takahashi Anna、Murase Masataka、Fukuyoshi Shuichi、Oda Akifumi、Satou Kenji、Takahashi Hiro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 46

    • DOI

      10.1128/mra.01169-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Draft Genome Sequence of Aspergillus terreus High-Itaconic-Acid-Productivity Mutant TN-4842019

    • Author(s)
      Kanamasa Shin、Minami Tomoyuki、Okabe Mitsuyasu、Park Enoch Y.、Fujimoto Tsukasa、Takahashi Anna、Murase Masataka、Fukuyoshi Shuichi、Oda Akifumi、Satou Kenji、Takahashi Hiro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 49

    • DOI

      10.1128/mra.01170-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] スクシンイミドおよびグルタルイミド構造に対する古典的分子力場パラメータの評価2019

    • Author(s)
      仲吉朝希、加藤紘一、福吉修一、栗本英治、小田彰史
    • Journal Title

      名城大学総合研究所総合学術研究論文集

      Volume: 18 Pages: 19-28

    • NAID

      40022135713

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Computational studies on the mechanisms of nonenzymatic intramolecular cyclization of the glutamine residues located at N-termini catalyzed by inorganic phosphate species2019

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
    • Journal Title

      ACS Omega

      Volume: 5 Issue: 16 Pages: 9162-9170

    • DOI

      10.1021/acsomega.9b04384

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computational studies on nonenzymatic pyroglutamylation mechanism of N-terminal glutamic acid residues in aqueous conditions*2019

    • Author(s)
      Nakayoshi Tomoki、Kato Koichi、Kurimoto Eiji、Oda Akifumi
    • Journal Title

      Molecular Physics

      Volume: - Issue: 14 Pages: e1702727-e1702727

    • DOI

      10.1080/00268976.2019.1702727

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Computational Studies on the Nonenzymatic Deamidation Mechanisms of Glutamine Residues2019

    • Author(s)
      Kato Koichi、Nakayoshi Tomoki、Kurimoto Eiji、Oda Akifumi
    • Journal Title

      ACS Omega

      Volume: 4 Issue: 2 Pages: 3508-3513

    • DOI

      10.1021/acsomega.8b03199

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Antiproliferative Aspidosperma-Type Monoterpenoid Indole Alkaloids from Bousigonia mekongensis Inhibit Tubulin Polymerization2019

    • Author(s)
      Zhang Yu、Goto Masuo、Oda Akifumi、Hsu Pei-Ling、Guo Ling-Li、Fu Yan-Hui、Morris-Natschke Susan、Hamel Ernest、Lee Kuo-Hsiung、Hao Xiao-Jiang
    • Journal Title

      Molecules

      Volume: 24 Issue: 7 Pages: 1256-1256

    • DOI

      10.3390/molecules24071256

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Possible Mechanisms of Nonenzymatic Formation of Dehydroalanine Residue Catalyzed by Dihydrogen Phosphate Ion2019

    • Author(s)
      Nakayoshi Tomoki、Kato Koichi、Kurimoto Eiji、Oda Akifumi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 123 Issue: 15 Pages: 3147-3155

    • DOI

      10.1021/acs.jpcb.8b10386

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Comparison of the activation energy barrier for succinimide formation from α- and β-aspartic acid residues obtained from density functional theory calculations2018

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda
    • Journal Title

      Biochimica et Biophysica Acta - Proteins and Proteomics

      Volume: 1866 Issue: 7 Pages: 759-766

    • DOI

      10.1016/j.bbapap.2017.12.011

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Influences of conformations of peptides on stereoinversions and/or isomerizations of aspartic acid residues2018

    • Author(s)
      Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Ohgi Takahashi
    • Journal Title

      Biochimica et Biophysica Acta - Proteins and Proteomics

      Volume: 1866 Issue: 7 Pages: 783-788

    • DOI

      10.1016/j.bbapap.2018.01.006

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Novel androgen receptor full antagonists: Design, synthesis, and a docking study of glycerol and aminoglycerol derivatives that contain p -carborane cages2018

    • Author(s)
      Kaise Asako、Ohta Kiminori、Fujii Shinya、Oda Akifumi、Goto Tokuhito、Endo Yasuyuki
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: 26 Issue: 13 Pages: 3805-3811

    • DOI

      10.1016/j.bmc.2018.06.007

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] 分子動力学法による小さいタンパク質の立体構造予測におけるシミュレーション時間の検討2018

    • Author(s)
      加藤紘一、仲吉朝希、福吉修一、栗本英治、小田彰史
    • Journal Title

      名城大学総合研究所総合学術研究論文集

      Volume: 17 Pages: 41-50

    • NAID

      40021640439

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functional characterization of 40 CYP2B6 allelic variants by assessing efavirenz 8-hydroxylation2018

    • Author(s)
      Watanabe Takashi、Saito Takahiro、Rico Evelyn Marie Gutierrez、Hishinuma Eiji、Kumondai Masaki、Maekawa Masamitsu、Oda Akifumi、Saigusa Daisuke、Saito Sakae、Yasuda Jun、Nagasaki Masao、Minegishi Naoko、Yamamoto Masayuki、Yamaguchi Hiroaki、Mano Nariyasu、Hirasawa Noriyasu、Hiratsuka Masahiro
    • Journal Title

      Biochemical Pharmacology

      Volume: 156 Pages: 420

    • DOI

      10.1016/j.bcp.2018.09.010

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional characterization of 50 CYP2D6 allelic variants by assessing primaquine 5-hydroxylation2018

    • Author(s)
      Saito Takahiro、Gutierrez Rico Evelyn Marie、Kikuchi Aoi、Kaneko Akira、Kumondai Masaki、Akai Fumika、Saigusa Daisuke、Oda Akifumi、Hirasawa Noriyasu、Hiratsuka Masahiro
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 33 Issue: 6 Pages: 250

    • DOI

      10.1016/j.dmpk.2018.08.004

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Prediction of the three-dimensional structures of histone deacetylase 1 complexed with romidepsin and FK-A52018

    • Author(s)
      Oda A、Kato K、Morino M、Nakayoshi T、Fukuyoshi S、Saijo K、Ishioka C、Kurimoto E
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 1136 Pages: 012019-012019

    • DOI

      10.1088/1742-6596/1136/1/012019

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computational studies on cyclic imide formation mechanism of glutamic acid residues catalyzed by two water molecules2018

    • Author(s)
      Nakayoshi T、Kato K、Fukuyoshi S、Takahashi O、Kurimoto E、Oda A
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 1136 Pages: 012020-012020

    • DOI

      10.1088/1742-6596/1136/1/012020

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural differences between the ligand-binding pockets of estrogen receptors alpha and beta2018

    • Author(s)
      Kato K、Fujii K、Nakayoshi T、Watanabe Y、Fukuyoshi S、Ohta K、Endo Y、Yamaotsu N、Hirono S、Kurimoto E、Oda A
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 1136 Pages: 012021-012021

    • DOI

      10.1088/1742-6596/1136/1/012021

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effect of the Arg456His mutation on the three-dimensional structure of cytochrome P450 1A2 predicted by molecular dynamics simulations2018

    • Author(s)
      Watanabe Y、Kato K、Fukuyoshi S、Hiratsuka M、Yamaotsu N、Hirono S、Gouda H、Oda A
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 1136 Pages: 012023-012023

    • DOI

      10.1088/1742-6596/1136/1/012023

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular dynamics study of the interaction between PACAP (6’?38’) and the N-terminal extracellular domain of the human splice variant hPAC1-R-short, aiming at the development of neuropathic pain medicine2018

    • Author(s)
      Watanabe Y、Oda A、Gouda H
    • Journal Title

      Journal of Physics: Conference Series

      Volume: 1136 Pages: 012024-012024

    • DOI

      10.1088/1742-6596/1136/1/012024

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Difference in substrate specificity of carboxylesterase and arylacetamide deacetylase between dogs and humans2018

    • Author(s)
      Tomohiro Yoshida, Tatsuki Fukami, Takaya Kurokawa, Saki Gotoh, Akifumi Oda, Miki Nakajima
    • Journal Title

      European Journal of Pharmaceutical Sciences

      Volume: 111 Pages: 167-176

    • DOI

      10.1016/j.ejps.2017.09.040

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Functional characterization of 9 CYP2A13 allelic variants by assessment of nicotine C-oxidation and coumarin 7-hydroxylation2018

    • Author(s)
      Masaki Kumondai, Hiroki Hosono, Masamitsu Maekawa, Hiroaki Yamaguchi, Nariyasu Mano, Akifumi Oda, Noriyasu Hirasawa, Masahiro Hiratsuka
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 33 Issue: 1 Pages: 82-89

    • DOI

      10.1016/j.dmpk.2017.11.004

    • NAID

      210000161998

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Computational studies on non-succinimide-mediated stereoinversion mechanism of aspartic acid residues assisted by phosphate2018

    • Author(s)
      Tomoki Nakayoshi, Shuichi Fukuyoshi, Ohgi Takahashi, Akifumi Oda
    • Journal Title

      Molecular Physics

      Volume: 116 Issue: 5-6 Pages: 686-696

    • DOI

      10.1080/00268976.2017.1414964

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Validation of molecular force field parameters for peptides including isomerized amino acids2018

    • Author(s)
      Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Noriyuki Yamaotsu, Shuichi Hirono, Ohgi Takahashi
    • Journal Title

      Chirality

      Volume: 30 Issue: 4 Pages: 332-341

    • DOI

      10.1002/chir.22821

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] The assembling mechanism of coiled-coil domains of the yeast cargo receptors Emp46p/47p and the mutational alteration of pH-dependency of complex formation2018

    • Author(s)
      Koichi Kato, Takahisa Furuhashi, Koichi Kato, Akifumi Oda, Eiji Kurimoto
    • Journal Title

      Journal of Biochemistry

      Volume: 163 Issue: 5 Pages: 441-446

    • DOI

      10.1093/jb/mvy011

    • NAID

      40021555337

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Triazine-Based Cationic Leaving Group: Synergistic Driving Forces for Rapid Formation of Carbocation Species2018

    • Author(s)
      Hikaru Fujita, Satoshi Kakuyama, Shuichi Fukuyoshi, Naoko Hayakawa, Akifumi Oda, Munetaka Kunishima
    • Journal Title

      The Journal of Organic Chemistry

      Volume: 83 Issue: 8 Pages: 4568-4580

    • DOI

      10.1021/acs.joc.8b00331

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Computational studies on the water-catalyzed stereoinversion mechanism of glutamic acid residues in peptides and proteins2018

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda
    • Journal Title

      Chirality

      Volume: 30 Issue: 5 Pages: 527-535

    • DOI

      10.1002/chir.22841

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Investigation of substrate recognition for cytochrome P450 1A2 mediated by water molecules using docking and molecular dynamics simulations2017

    • Author(s)
      Yurie Watanabe, Shuichi Fukuyoshi, Koichi Kato, Masahiro Hiratsuka, Noriyuki Yamaotsu, Shuichi Hirono, Hiroaki Gouda, Akifumi Oda
    • Journal Title

      Journal of Molecular Graphics and Modelling

      Volume: 74 Pages: 326-336

    • DOI

      10.1016/j.jmgm.2017.04.006

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Functional characterization of 21 allelic variants of dihydropyrimidinase2017

    • Author(s)
      Eiji Hishinuma, Fumika Akai, Yoko Narita, Masamitsu Maekawa, Hiroaki Yamaguchi, Nariyasu Mano, Akifumi Oda, Noriyasu Hirasawa, Masahiro Hiratsuka
    • Journal Title

      Biochemical Pharmacology

      Volume: 143 Pages: 118-128

    • DOI

      10.1016/j.bcp.2017.06.121

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Validation of Molecular Dynamics Simulations for Prediction of Three-dimensional Structures of Small Proteins2017

    • Author(s)
      Koichi Kato, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Akifumi Oda
    • Journal Title

      Molecules

      Volume: 22 Issue: 10 Pages: 1716-1716

    • DOI

      10.3390/molecules22101716

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Determination of molecular force field parameters for nitronyl nitroxide derivatives using quantum chemical calculations2017

    • Author(s)
      Akifumi Oda, Shuichi Fukuyoshi, Eiji Kurimoto
    • Journal Title

      Polyhedron

      Volume: 136 Pages: 93-101

    • DOI

      10.1016/j.poly.2017.03.009

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] Computational Analysis on Deamidation Mechanisms of Asparagine Residues Catalyzed by Acetic Acid2020

    • Author(s)
      Tomoki Nakayoshi, Kota Wanita, Koichi Kato, Eiji Kurimoto, Akifumi Oda
    • Organizer
      60th Sanibel Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 分子動力学シミュレーションによる野生型および変異型CYP2A13の立体構造の推定2020

    • Author(s)
      日置翔、仲吉朝希、加藤紘一、平塚真弘、栗本英治、小田彰史
    • Organizer
      日本薬学会第140年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ヒトおよびイヌのカルボキシルエステラーゼ2の分子動力学シミュレーション2020

    • Author(s)
      中野裕二朗、仲吉朝希、加藤紘一、深見達基、中島美紀、栗本英治、小田彰史
    • Organizer
      日本薬学会第140年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Functional characterization of 11 allelic variants of CYP2C9 identified in 3554 Japanese individuals2019

    • Author(s)
      Kumondai M, Ito A, Saito T, Saito S, Yasuda J, Nagasaki M, Kinoshita K, Yamamoto M, Oda A, Hirasawa N, Hiratsuka M
    • Organizer
      International Conferences on Cytochrome P450
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 分子動力学シミュレーションによる野生型および変異型ジヒドロピリミジナーゼの構造解析2019

    • Author(s)
      名倉鮎香、仲吉朝希、加藤紘一、平塚真弘、栗本英治、小田彰史
    • Organizer
      第65回日本薬学会東海支部大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Computational studies on nonenzymatic succinimide-formation mechanisms of the aspartic acid residues catalyzed by two water molecules2019

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda
    • Organizer
      The 4th International Conference of D-Amino Acid Research
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Effects of main chain conformations on succinimide formation from asparagine residues2019

    • Author(s)
      Koichi Kato, Kaho Miura, Tomoki Nakayoshi, Kikuo Tsukamoto, Eiji Kurimoto, Akifumi Oda
    • Organizer
      The 4th International Conference of D-Amino Acid Research
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Influence of the conformations of alpha A-crystallin peptides on the isomerization rates of aspartic acid residues2019

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
    • Organizer
      The 4th International Conference of D-Amino Acid Research
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 分子動力学シミュレーションによるCYP2C8変異体の立体構造解析2019

    • Author(s)
      仲吉朝希、加藤紘一、松浦絵梨、平塚真弘、栗本英治、小田彰史
    • Organizer
      日本コンピュータ化学会2019秋季年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Computational Studies on Pyroglutamylation Mechanism of N-Terminal Glutamic Acid Residues in Aqueous Conditions2019

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
    • Organizer
      59th Sanibel Symposium
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 酵素で制御されていない生体内反応についての計算化学的研究2019

    • Author(s)
      小田彰史
    • Organizer
      第7回物理・分析系若手研究者セミナー
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] GADVアミノ酸セットにグルタミン酸が加わることの構造生物学的意味2019

    • Author(s)
      小田彰史、仲吉朝希、加藤紘一、森部聖士、野田奈津子、栗本英治
    • Organizer
      生命の起原および進化学会第44回学術講演会
    • Related Report
      2018 Research-status Report
  • [Presentation] 分子動力学シミュレーションを用いた野生型および変異型CYP2A6の立体構造の推定2019

    • Author(s)
      野倉里香、仲吉朝希、加藤紘一、松浦絵梨、平塚真弘、栗本英治、小田 彰史
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 野生型および変異型ジヒドロピリミジナーゼの分子動力学シミュレーション2019

    • Author(s)
      名倉鮎香、仲吉朝希、加藤紘一、平塚真弘、栗本英治、小田彰史
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 日本人3554人の全ゲノム解析から同定されたジヒドロピリミジナーゼ遺伝子多型におけるバリアント酵素の機能変化2019

    • Author(s)
      成田瑶子、菱沼英史、齋藤さかえ、安田純、長﨑正朗、前川正充、小田彰史、平澤典保、平塚真弘
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Research-status Report
  • [Presentation] 分子動力学シミュレーションによる野生型および変異型シトクロムP450 2C8 の構造および柔軟性の評価2018

    • Author(s)
      松浦絵梨、仲吉朝希、加藤紘一、平塚真弘、栗本英治、小田彰史
    • Organizer
      第64回日本薬学会東海支部大会
    • Related Report
      2018 Research-status Report
  • [Presentation] Modification of pH-dependence for coiled-coil assembly by introducing glutamate residue to the hydrophobic surface: computational design and experimental mutagenesis2018

    • Author(s)
      Koichi Kato, Tomoki Nakayoshi, Eiji Kurimoto, Akifumi Oda
    • Organizer
      22nd European Symposium on Quantitative Structure-Activity Relationships
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Theoretical study for the influence of Asp-residue stereoinversion and/or isomerization on the three-dimensional structure of ribonuclease A2018

    • Author(s)
      Tomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
    • Organizer
      22nd European Symposium on Quantitative Structure-Activity Relationships
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Prediction of three-dimensional structures of histone deacetylase 1 complexed with romidepsin and its analog2017

    • Author(s)
      Akifumi Oda, Koichi Kato, Mayu Morino, Tomoki Nakayoshi, Shuichi Fukuyoshi, Ken Saijo, Chikashi Ishioka, Eiji Kurimoto
    • Organizer
      XXIX IUPAP Conference on Computational Physics
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Effect of the Arg456His mutation on the threedimensional structure of cytochrome P450 1A2 predicted by molecular dynamics simulations2017

    • Author(s)
      Yurie Watanabe, Koichi Kato, Shuichi Fukuyoshi, Masahiro Hiratsuka, Noriyuki Yamaotsu, Shuichi Hirono, Hiroaki Gouda, Akifumi Oda
    • Organizer
      XXIX IUPAP Conference on Computational Physics
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Validation of molecular force field parameters for D-amino acids using quantum chemical calculations of model peptides2017

    • Author(s)
      Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Noriyuki Yamaotsu, Shuichi Hirono, Ohgi Takahashi
    • Organizer
      Chirality 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Influences of conformations of peptides on stereoinversions and/or isomerizations of aspartic acid residues2017

    • Author(s)
      Akifumi Oda, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Ohgi Takahashi
    • Organizer
      The 3rd International Conference of D-Amino Acid Research
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Analysis of functional segments in the coiled coil domains of yeast cargo receptors Emp46p/47p and application to pH sensitive devices2017

    • Author(s)
      Koichi Kato, Yukiho Shimizu, Eiji Kurimoto, Akifumi Oda
    • Organizer
      19th International Union of Pure and Applied Biophysics and 11th European Biophysical Societies' Association Congress
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 日本人2049人の全ゲノム解析から同定された8種のDHPレアバリント活性変化2017

    • Author(s)
      成田瑶子、菱沼英史、齋藤さかえ、安田純、長﨑正朗、前川正充、小田彰史、平澤典保、平塚真弘
    • Organizer
      第56回日本薬学会東北支部大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 計算機によるドッキングで得られた複合体構造候補に対する分子動力学シミュレーション2017

    • Author(s)
      小田彰史、加藤紘一、仲吉朝希、福吉修一、栗本英治
    • Organizer
      第45回構造活性相関シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 21種類のジヒドロピリミジナーゼ遺伝子多型バリアントの機能解析2017

    • Author(s)
      菱沼英史、赤井文香、成田瑶子、前川正充、山口浩明、眞野成康、小田彰史、平澤典保、平塚真弘
    • Organizer
      日本薬物動態学会第32回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] ニコチンC-酸化活性およびクマリン7-水酸化活性におけるCYP2A13遺伝子多型バリアント酵素の機能変化2017

    • Author(s)
      公文代將希、細野寛貴、前川正充、小田彰史、平澤典保、平塚真弘
    • Organizer
      日本薬物動態学会第32回年会
    • Related Report
      2017 Research-status Report
  • [Presentation] アミノ酸残基の非酵素的反応はタンパク質構成選択に影響を与えたか2017

    • Author(s)
      仲吉朝希、加藤紘一、福吉修一、栗本英治、小田彰史
    • Organizer
      生命の起原および進化学会第43回学術講演会
    • Related Report
      2017 Research-status Report
  • [Presentation] ラセミ体のアミノ酸から構築された原始タンパク質の立体構造の推定2017

    • Author(s)
      小田彰史、仲吉朝希、加藤紘一、福吉修一、栗本英治
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Research-status Report
  • [Remarks] 生物物理化学研究室|名城大学 薬学部

    • URL

      http://www-yaku.meijo-u.ac.jp/kenkyu/biophysical/

    • Related Report
      2019 Annual Research Report 2018 Research-status Report 2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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