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The mechanism of spread of epidemic clones of antimicrobial resistant bacteria

Research Project

Project/Area Number 17K08846
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Bacteriology (including mycology)
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

Suzuki Masato  国立感染症研究所, 薬剤耐性研究センター, 主任研究官 (70444073)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords薬剤耐性 / 病原性 / アシネトバクター・バウマニ / T6SS / cGAS / 分泌タンパク質 / 細菌間競合 / 流行株 / VI型分泌機構
Outline of Final Research Achievements

Acinetobacter baumannii is one of the most serious antimicrobial resistant bacteria, and the epidemic clones have acquired antimicrobial resistance genes. In this study, we collected A. baumannii clinical isolates in the world, and performed comparative genomic analysis of the isolates and functional analysis of the type VI secretion system (T6SS). Some multidrug-resistant epidemic clones of A. baumannii utilized T6SS to compete neighbour bacteria depending on bactericidal activities of effecter proteins secreted via T6SS, and seemed to have accumulated useful genes, such as antimicrobial resistant genes and virulence-associated genes, on their genomes and plasmids. We identified enzymatic activities of several T6SS effecter proteins, and elucidated the effect of T6SS on bacterial conjugation of antimicrobial resistance plasmids among A. baumannii.

Academic Significance and Societal Importance of the Research Achievements

病原細菌において、菌種・菌株毎に保存性が異なるT6SSの分泌タンパク質は、菌株間のビルレンスの差違や菌株の地域・人種特異性などを説明することが可能な重要な因子であり、最新の細菌学と分子疫学の知見を結び付ける成果を得られることが期待できる。また今後、細菌感染症の創薬やワクチンの開発を考える上で、病原細菌の宿主内生存・増殖を阻害することが可能な効果的な標的になることが期待できる。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (30 results)

All 2020 2019 2018 2017

All Journal Article (18 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 15 results,  Open Access: 14 results) Presentation (12 results) (of which Int'l Joint Research: 4 results,  Invited: 5 results)

  • [Journal Article] Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria2020

    • Author(s)
      Kiga Kotaro、Tan Xin-Ee、Ibarra-Ch?vez Rodrigo、Watanabe Shinya、Aiba Yoshifumi、Sato’o Yusuke、Li Feng-Yu、Sasahara Teppei、Cui Bintao、Kawauchi Moriyuki、Boonsiri Tanit、Thitiananpakorn Kanate、Taki Yusuke、Azam Aa Haeruman、Suzuki Masato、Penad?s Jos? R.、Cui Longzhu
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 2934-2934

    • DOI

      10.1038/s41467-020-16731-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Acinetobacter baumannii ATCC 19606T, a Model Strain of Pathogenic Bacteria Causing Nosocomial Infection2020

    • Author(s)
      Tsubouchi Taishi、Suzuki Masato、Niki Makoto、Oinuma Ken-Ichi、Niki Mamiko、Kakeya Hiroshi、Kaneko Yukihiro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 20

    • DOI

      10.1128/mra.00289-20

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-genome sequencing and comparative genomic analysis of Shewanella xiamenensis strains carrying blaOXA-48-like genes isolated from a water environment in Vietnam2020

    • Author(s)
      Nguyen Nga Thi、Takemura Taichiro、Pham Anh Hong Quynh、Tran Hien Thi、Vu Kim Chi Thi、Tu Nguyen Dong、Huong Le Thanh、Cuong Ngo Tuan、Kasuga Ikuro、Hasebe Futoshi、Suzuki Masato
    • Journal Title

      Journal of Global Antimicrobial Resistance

      Volume: 21 Pages: 272-274

    • DOI

      10.1016/j.jgar.2020.04.033

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] First Report of the Local Spread of Vancomycin-Resistant Enterococci Ascribed to the Interspecies Transmission of a vanA Gene Cluster-Carrying Linear Plasmid2020

    • Author(s)
      Hashimoto Yusuke、Kita Izumi、Suzuki Masato、Hirakawa Hidetada、Ohtaki Hirofumi、Tomita Haruyoshi
    • Journal Title

      mSphere

      Volume: 5 Issue: 2

    • DOI

      10.1128/msphere.00102-20

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-Tube Multiplex Polymerase Chain Reaction for the Detection of Genes Encoding Enterobacteriaceae Carbapenemase2020

    • Author(s)
      Watahiki Masanori、Kawahara Ryuji、Suzuki Masahiro、Aoki Miyako、Uchida Kaoru、Matsumoto Yuko、Kumagai Yuko、Noda Makiko、Masuda Kanako、Fukuda Chiemi、Harada Seiya、Senba Keiko、Suzuki Masato、Matsui Mari、Suzuki Satowa、Shibayama Keigo、Shinomiya Hiroto
    • Journal Title

      Japanese Journal of Infectious Diseases

      Volume: 73 Issue: 2 Pages: 166-172

    • DOI

      10.7883/yoken.JJID.2019.041

    • NAID

      130007814973

    • ISSN
      1344-6304, 1884-2836
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Helicobacter suis Strain SNTW101c, Originally Isolated from a Patient with Nodular Gastritis2020

    • Author(s)
      Rimbara Emiko、Suzuki Masato、Matsui Hidenori、Nakamura Masahiko、Kobayashi Hirotaka、Mori Shigetarou、Shibayama Keigo
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 1

    • DOI

      10.1128/mra.01340-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Mycoplasma bovis Strain KG4397, Isolated from Cattle in Japan2019

    • Author(s)
      Morimoto Misako、Kenri Tsuyoshi、Ohmori Takashi、Teshima Kaho、Shibuya Kazumoto、Sasakawa Chihiro、Suzuki Masato
    • Journal Title

      Microbiology Resource Announcements

      Volume: 8 Issue: 40

    • DOI

      10.1128/mra.00838-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bactericidal efficacies of food additive grade calcium hydroxide toward <i>Legionella pneumophila</i>2019

    • Author(s)
      ALAM Md. Shahin、TAKAHASHI Satoru、ITO Mariko、KOMURA Miyuki、KABIR Md. Humayun、SHOHAM Dany、SAKAI Kouji、SUZUKI Masato、TAKEHARA Kazuaki
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 81 Issue: 9 Pages: 1318-1325

    • DOI

      10.1292/jvms.19-0098

    • NAID

      130007708877

    • ISSN
      0916-7250, 1347-7439
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-Based Epidemiological Analysis of 13 <i>Acinetobacter</i> Strains Isolated from Blood Cultures of Hospitalized Patients from a University Hospital in Japan2019

    • Author(s)
      Oinuma KI, Suzuki M, Nakaie K, Sato K, Saeki K, Sakiyama A, Takizawa E, Niki M, Niki M, Yamada K, Shibayama K, Kakeya H, Kaneko Y
    • Journal Title

      Japanese Journal of Infectious Diseases

      Volume: 72 Issue: 4 Pages: 274-280

    • DOI

      10.7883/yoken.JJID.2018.403

    • NAID

      130007682332

    • ISSN
      1344-6304, 1884-2836
    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular epidemiological analysis and risk factors for acquisition of carbapenemase-producing Enterobacter cloacae complex in a Japanese university hospital2019

    • Author(s)
      Tetsuka Nobuyuki、Hirabayashi Aki、Matsumoto Akane、Oka Keisuke、Hara Yuki、Morioka Hiroshi、Iguchi Mitsutaka、Tomita Yuka、Suzuki Masato、Shibayama Keigo、Yagi Tetsuya
    • Journal Title

      Antimicrobial Resistance & Infection Control

      Volume: 8 Issue: 1

    • DOI

      10.1186/s13756-019-0578-3

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel Sequence Type in Bacillus cereus Strains Associated with Nosocomial Infections and Bacteremia, Japan.2019

    • Author(s)
      Akamatsu R, Suzuki M, Okinaka K, Sasahara T, Yamane K, Suzuki S, Fujikura D, Furuta Y, Ohnishi N, Esaki M, Shibayama K, Higashi H
    • Journal Title

      Emerging Infectious Diseases

      Volume: 25(5) Issue: 5 Pages: 883-890

    • DOI

      10.3201/eid2505.171890

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A facile synthesis of (+)/(-)-pentenomycin I and analogs, and their antimicrobial evaluation.2019

    • Author(s)
      Kamishima T, Suzuki M, Aoyagi S, Watanabe T, Koseki Y, Kasai H
    • Journal Title

      Tetrahedron Letters

      Volume: 60(20) Issue: 20 Pages: 1375-1378

    • DOI

      10.1016/j.tetlet.2019.04.026

    • Related Report
      2019 Annual Research Report 2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence of Mycobacterium marinum ATCC 927T, Obtained Using Nanopore and Illumina Sequencing Technologies2018

    • Author(s)
      Yoshida Mitsunori、Fukano Hanako、Miyamoto Yuji、Shibayama Keigo、Suzuki Masato、Hoshino Yoshihiko
    • Journal Title

      Genome Announcements

      Volume: 6 Issue: 20 Pages: 1-3

    • DOI

      10.1128/genomea.00397-18

    • Related Report
      2018 Research-status Report 2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of a Type Strain of Mycobacterium abscessus subsp. bolletii, a Member of the Mycobacterium abscessus Complex2018

    • Author(s)
      Yoshida Mitsunori、Fukano Hanako、Miyamoto Yuji、Shibayama Keigo、Suzuki Masato、Hoshino Yoshihiko
    • Journal Title

      Genome Announcements

      Volume: 6 Issue: 5

    • DOI

      10.1128/genomea.01530-17

    • Related Report
      2017 Research-status Report
    • Open Access
  • [Journal Article] Mutations in Genes Encoding Penicillin-Binding Proteins and Efflux Pumps Play a Role in β-Lactam Resistance in Helicobacter cinaedi2017

    • Author(s)
      Rimbara Emiko、Mori Shigetarou、Kim Hyun、Suzuki Masato、Shibayama Keigo
    • Journal Title

      Antimicrobial Agents and Chemotherapy

      Volume: 62 Issue: 2

    • DOI

      10.1128/aac.02036-17

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distribution and Molecular Characterization of Acinetobacter baumannii International Clone II Lineage in Japan2017

    • Author(s)
      Matsui Mari、Suzuki Masato、Suzuki Masahiro、Yatsuyanagi Jun、Watahiki Masanori、Hiraki Yoichi、Kawano Fumio、Tsutsui Atsuko、Shibayama Keigo、Suzuki Satowa
    • Journal Title

      Antimicrobial Agents and Chemotherapy

      Volume: 62 Issue: 2

    • DOI

      10.1128/aac.02190-17

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Draft Genome Sequence of Mycobacterium sp. Strain shizuoka-1, a Novel Mycobacterium Isolated from Groundwater of a Bathing Facility in Shizuoka, Japan2017

    • Author(s)
      Yoshida Mitsunori、Izumiyama Shinji、Fukano Hanako、Sugiyama Kanji、Suzuki Masato、Shibayama Keigo、Hoshino Yoshihiko
    • Journal Title

      Genome Announcements

      Volume: 5 Issue: 47

    • DOI

      10.1128/genomea.01309-17

    • Related Report
      2017 Research-status Report
    • Open Access
  • [Journal Article] Complete Genome Sequences of the p1 Gene Type 2b and 2c Strains Mycoplasma pneumoniae KCH-402 and KCH-4052017

    • Author(s)
      Kenri Tsuyoshi、Suzuki Masato、Horino Atsuko、Sekizuka Tsuyoshi、Kuroda Makoto、Fujii Hiroyuki、Hashimoto Toru、Nakajima Hiroshi、Ohya Hitomi、Shibayama Keigo
    • Journal Title

      Genome Announcements

      Volume: 5 Issue: 24

    • DOI

      10.1128/genomea.00513-17

    • Related Report
      2017 Research-status Report
    • Open Access
  • [Presentation] 国内外の緑膿菌分離株の薬剤耐性と病原性機構2019

    • Author(s)
      鈴木 仁人
    • Organizer
      第53回緑膿菌感染症研究会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] Plasmidome analysis of carbapenem-resistant Enterobacteriaceae isolated in Vietnam2019

    • Author(s)
      Masato Suzuki
    • Organizer
      U.S.-Japan Cooperative Medical Sciences Program (USJCMSP) 21st Acute Respiratory Infections (ARI) Panel Meeting - Bacterial Diseases
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 多剤耐性グラム陰性菌に有効な抗菌ポリマーの開発2018

    • Author(s)
      成瀬 秀則、一久 和弘、井本 裕顕、平林 亜希、柴山 恵吾、鈴木 仁人
    • Organizer
      第47回薬剤耐性菌研究会
    • Related Report
      2018 Research-status Report
  • [Presentation] ポリミキシン耐性菌感染症の現状とその治療法の開発2018

    • Author(s)
      鈴木 仁人
    • Organizer
      第101回日本細菌学会関東支部総会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] MinION sequencing analysis on antimicrobial resistant bacteria2018

    • Author(s)
      Masato Suzuki
    • Organizer
      3rd Technology Seminar on the MinION sequencing
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Type VI secretion systems in bacterial pathogens causing nosocomial infections2018

    • Author(s)
      Masato Suzuki, Maho Yoshida, Koji Yahara, Keigo Shibayama
    • Organizer
      第91回日本細菌学会総会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] アシネトバクター属菌における薬剤耐性と細菌間競合2018

    • Author(s)
      鈴木 仁人、吉田 真歩、矢原 耕史、柴山 恵吾
    • Organizer
      第52回緑膿菌感染症研究会
    • Related Report
      2017 Research-status Report
  • [Presentation] Acinetobactor baumanniiの接合伝達におけるVI型分泌機構の影響2017

    • Author(s)
      吉田 真歩、平林 亜希、荒川 宜親、柴山 恵吾、鈴木 仁人
    • Organizer
      第46回薬剤耐性菌研究会
    • Related Report
      2017 Research-status Report
  • [Presentation] 微生物のサバイバルゲーム - 殺す:薬剤耐性菌のVI型分泌機構を介した拡散機構2017

    • Author(s)
      鈴木 仁人
    • Organizer
      環境微生物系学会合同大会2017
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] 薬剤耐性プラスミドの接合伝達におけるVI型分泌機構の影響2017

    • Author(s)
      吉田 真歩、平林 亜希、荒川 宜親、柴山 恵吾、鈴木 仁人
    • Organizer
      第11回細菌学若手コロッセウム
    • Related Report
      2017 Research-status Report
  • [Presentation] The evolution of pandemic antimicrobial-resistant lineages of Acinetobacter baumannii2017

    • Author(s)
      Masato Suzuki, Mari Matsui, Satowa Suzuki, Maho Yoshida, Koji Yahara, Keigo Shibayama
    • Organizer
      IUMS 2017 (15th International Congress of Bacteriology and Applied Microbiology)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Large antimicrobial resistance plasmids disseminated among Acinetobacter species2017

    • Author(s)
      Masato Suzuki, Mari Matsui, Satowa Suzuki, Takaya Segawa, Koji Yahara, Shizuo Kayama, Motoyuki Sugai, and Keigo Shibayama
    • Organizer
      ECCMID 2017 (27th European Congress of Clinical Microbiology and Infectious Diseases)
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research

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Published: 2017-04-28   Modified: 2021-02-19  

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