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Elucidation of the regulatory basis for alternative splicing towards controlling HIV-1 replication

Research Project

Project/Area Number 17K08860
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Virology
Research InstitutionThe University of Tokushima

Principal Investigator

NOMAGUCHI Masako  徳島大学, 大学院医歯薬学研究部(医学域), 教授 (80452647)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2019: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsHIV-1 / 同義1塩基置換 / 適応 / Vif / 選択的スプライシング / Vpr / alternative splicing / スプライシング / 変異 / 遺伝子発現 / ウイルス複製 / 変異・適応 / ウイルス / RNAスプライシング
Outline of Final Research Achievements

Vif is essential for HIV-1 replication by antagonizing host restriction factor APOBEC3. Understanding regulatory bases for Vif expression certainly serves to establish a new anti-HIV-1 strategy. HIV-1 mRNAs are produced by alternative splicing via splicing donors (SD1-SD4) and acceptors (SA1-SA7). We demonstrated by adaptation studies that the nucleotide sequence around SA1 and SD2 (SA1D2prox) is involved in modulating vif mRNA expression. Sequence containing the SA1 site forms a stem loop structure (SLSA1). Mutational analysis showed that the SLSA1 stability and the vif mRNA expression level are inversely correlated, indicating the regulatory association of SLSA1 with vif mRNA production. Furthermore, our virological analysis using different HIV-1 subtypes showed that the region around SA2 and SD3, in addition to SA1D2prox, also determines the vif mRNA expression level. Collectively, we newly identified the genomic region and RNA secondary structure critical for vif mRNA production.

Academic Significance and Societal Importance of the Research Achievements

HIV-1 Vifタンパク質は、宿主細胞のウイルス抑制因子APOBEC3タンパク質群と拮抗するため、ウイルス複製に必須である。Vifの発現量や活性の変化は、ウイルス複製を変動させる主な要因の一つである。したがって、Vifの発現量調節機構の解明は極めて重要であるが、様々なHIV-1ゲノム配列や宿主因子群などが関与するため、その機構は非常に複雑である。本研究における詳細なウイルス学的研究により、Vif発現量調節に関与するゲノム領域と構造を明らかすることができた。今後、Vifの発現量調節機構の全貌解明を尚一層進展させ、Vif発現量を介したHIV-1複製制御手法の確立を目指す。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (26 results)

All 2019 2018 2017

All Journal Article (13 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 13 results,  Open Access: 12 results) Presentation (13 results)

  • [Journal Article] PIM kinases facilitate lentiviral evasion from SAMHD1 restriction via Vpx phosphorylation2019

    • Author(s)
      Miyakawa Kei、Matsunaga Satoko、Yokoyama Masaru、Nomaguchi Masako、Kimura Yayoi、Nishi Mayuko、Kimura Hirokazu、Sato Hironori、Hirano Hisashi、Tamura Tomohiko、Akari Hirofumi、Miura Tomoyuki、Adachi Akio、Sawasaki Tatsuya、Yamamoto Naoki、Ryo Akihide
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1844-1844

    • DOI

      10.1038/s41467-019-09867-7

    • NAID

      120006949469

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Allosteric Regulation of HIV-1 Capsid Structure for Gag Assembly, Virion Production, and Viral Infectivity by a Disordered Interdomain Linker.2019

    • Author(s)
      2.Koma T, Kotani O, Miyakawa K, Ryo A, Yokoyama M, Doi N, Adachi A, Sato H, Nomaguchi M
    • Journal Title

      Journal of Virology

      Volume: 93 (17) Issue: 17

    • DOI

      10.1128/jvi.00381-19

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Role for Gag-CA Interdomain Linker in Primate Lentiviral Replication2019

    • Author(s)
      Doi Naoya、Koma Takaaki、Adachi Akio、Nomaguchi Masako
    • Journal Title

      Frontiers in Microbiology

      Volume: 10

    • DOI

      10.3389/fmicb.2019.01831

    • NAID

      120006937679

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression Level of HIV-1 Vif Can Be Fluctuated by Natural Nucleotide Variations in the vif-Coding and Regulatory SA1D2prox Sequences of the Proviral Genome2019

    • Author(s)
      Doi Naoya、Koma Takaaki、Adachi Akio、Nomaguchi Masako
    • Journal Title

      Frontiers in Microbiology

      Volume: 10

    • DOI

      10.3389/fmicb.2019.02758

    • NAID

      120006937680

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Concomitant enhancement of HIV-1 replication potential and neutralization-resistance in concert with three adaptive mutations in Env V1/C2/C4 domains.2019

    • Author(s)
      Doi N, Yokoyama M, Koma T, Kotani O, Sato H, Adachi A, Nomaguchi M.
    • Journal Title

      Frontiers in Microbiology

      Volume: 10 Pages: 2510-2510

    • DOI

      10.3389/fmicb.2019.00002

    • NAID

      120006937678

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] CXCR4- and CCR5-tropic HIV-1 clones are both tractable to grow in rhesus macaques.2018

    • Author(s)
      Doi N, Miura T, Mori H, Sakawaki H, Koma T, Adachi A, and Nomaguchi M.
    • Journal Title

      Frontiers in Microbiology

      Volume: 9 Pages: 2510-2510

    • DOI

      10.3389/fmicb.2018.02510

    • NAID

      120006937677

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Virological characterization of HIV‐1 CA‐NTD mutants constructed in a virus‐lineage reflected manner2018

    • Author(s)
      Nakanishi Shouko、Watanabe sakimi、Doi Naoya、Koma Takaaki、Adachi Akio、Nomaguchi Masako
    • Journal Title

      The Journal of Medical Investigation

      Volume: 65 Issue: 1.2 Pages: 110-115

    • DOI

      10.2152/jmi.65.110

    • NAID

      130006575575

    • ISSN
      1343-1420, 1349-6867
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] HIV-1 mutates to adapt in fluxing environments2017

    • Author(s)
      Nomaguchi Masako、Doi Naoya、Koma Takaaki、Adachi Akio
    • Journal Title

      Microbes and Infection

      Volume: S1286-4579(17)30118-1 Issue: 9-10 Pages: 610-614

    • DOI

      10.1016/j.micinf.2017.08.003

    • Related Report
      2018 Research-status Report 2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Comparison of Biochemical Properties of HIV-1 and HIV-2 Capsid Proteins2017

    • Author(s)
      Miyazaki Yasuyuki、Miyake Ariko、Doi Noya、Koma Takaaki、Uchiyama Tsuneo、Adachi Akio、Nomaguchi Masako
    • Journal Title

      Frontiers in Microbiology

      Volume: 8

    • DOI

      10.3389/fmicb.2017.01082

    • NAID

      120006937689

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel In Vitro Screening System Based on Differential Scanning Fluorimetry to Search for Small Molecules against the Disassembly or Assembly of HIV-1 Capsid Protein2017

    • Author(s)
      Miyazaki Yasuyuki、Doi Naoya、Koma Takaaki、Adachi Akio、Nomaguchi Masako
    • Journal Title

      Frontiers in Microbiology

      Volume: 8

    • DOI

      10.3389/fmicb.2017.01413

    • NAID

      120006937688

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation and characterization of new CCR5-tropic HIV-1rmt clones2017

    • Author(s)
      Doi Naoya、Sakai Yosuke、Adachi Akio、Nomaguchi Masako
    • Journal Title

      The Journal of Medical Investigation

      Volume: 64 Issue: 3.4 Pages: 272-279

    • DOI

      10.2152/jmi.64.272

    • NAID

      130006105186

    • ISSN
      1343-1420, 1349-6867
    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequences of human immunodeficiency type 1 viruses genetically engineered to be tropic for rhesus macaques2017

    • Author(s)
      Nomaguchi Masako、Doi Naoya、Koma Takaaki、Adachi Akio
    • Journal Title

      Genome Announcements

      Volume: 5 Issue: 39

    • DOI

      10.1128/genomea.01063-17

    • NAID

      120007001411

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Production of HIV-1 vif mRNA Is Modulated by Natural Nucleotide Variations and SLSA1 RNA Structure in SA1D2prox Genomic Region2017

    • Author(s)
      Nomaguchi Masako、Doi Naoya、Yoshida Tomoya、Koma Takaaki、Adachi Shun、Ode Hirotaka、Iwatani Yasumasa、Yokoyama Masaru、Sato Hironori、Adachi Akio
    • Journal Title

      Frontiers in Microbiology

      Volume: 8 Pages: 2542-2542

    • DOI

      10.3389/fmicb.2017.02542

    • NAID

      120006937675

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] CCR5指向性HIV-1のEnv V3 tip内1アミノ酸変異による種特異的増殖促進の分子基盤2019

    • Author(s)
      土肥直哉、駒貴明、足立昭夫、野間口雅子
    • Organizer
      第67回日本ウイルス学会学術集会
    • Related Report
      2019 Annual Research Report
  • [Presentation] HIV-1ゲノムのSA1D2prox変異と適応変異によるVif発現量決定機構の解析2019

    • Author(s)
      野間口雅子、駒貴明、土肥直哉、山本秀樹、渡邊京介、竹本真依、足立昭夫
    • Organizer
      第67回日本ウイルス学会学術集会
    • Related Report
      2019 Annual Research Report
  • [Presentation] HIV-1 Gag集合初期に関わる集合促進因子の探索2019

    • Author(s)
      駒貴明、土肥直哉、中嶋敏司、足立昭夫、野間口雅子
    • Organizer
      第67回日本ウイルス学会学術集会
    • Related Report
      2019 Annual Research Report
  • [Presentation] HIV-1 Gag集合初期に関わる内在性集合促進因子の探索2019

    • Author(s)
      駒貴明、土肥直哉、足立昭夫、野間口雅子
    • Organizer
      第33回日本エイズ学会学術集会・総会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Biological analysis on virus growth enhancement by Env alterations identified in adapted R5-tropic HIV-1rmt clones2018

    • Author(s)
      土肥直哉,駒貴明,中西仁奈,吉田和子,足立昭夫,野間口雅子
    • Organizer
      日本ウイルス学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] HIV-1 SA1D2prox variant of low Vif type, NL-gat, enhances its growth by adaptive mutation to increase Vif level or by mutation in env2018

    • Author(s)
      野間口雅子,土肥直哉,駒貴明,吉田和子,足立昭夫
    • Organizer
      日本ウイルス学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] Analysis on viral adaptation process under a high APOBEC3G level of HIV-1 SA1D2prox variant, NL-tac, that expresses a faint amount of Vif2018

    • Author(s)
      足立昭夫,土肥直哉,駒貴明,大久保隼人,吉田和子,野間口雅子
    • Organizer
      日本ウイルス学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] Role for the Gag-CA linker domain in the late HIV-1 replication phase2018

    • Author(s)
      駒貴明,小谷治,土肥直哉,宮川 敬,梁明秀,横山勝,佐藤裕徳,足立昭夫,野間口雅子
    • Organizer
      日本ウイルス学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] HIV-1複製後期過程におけるGag-CA リンカー領域内アミノ酸残基S149及びIa50の役割.2017

    • Author(s)
      Koma, T., Doi, N., Miyakawa, K., Ryo, A., Adachi, A., and Nomaguchi, M.
    • Organizer
      第65回日本ウイルス学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] HIV-1 vif 産生量とSLSA1の構造・エネルギー庵芸性の連関解析.2017

    • Author(s)
      Adachi, A., Doi, N., Koma, T., Nakanishi, S., Watanabe, S., and Nomaguchi, M.
    • Organizer
      第65回日本ウイルス学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] Env domain swappingにより増殖効率が向上した馴化型R5-tropic HIV-1rmtの構築.2017

    • Author(s)
      Doi, N., Koma, T., Nakanishi, S., Watanabe, S., Nomaguchi, M., and Adachi, A.
    • Organizer
      第65回日本ウイルス学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] HIV-1 SA1D2prox Vif低発現変異体は複製抑制下で適応しVif発現を回復する.2017

    • Author(s)
      Watanabe, S., Nakanishi, S., Koma, T., Doi, N., Adachi, A., and Nomaguchi, M.
    • Organizer
      第65回日本ウイルス学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] HIV-1 Env V1/C4 domain 内の1アミノ酸変異は協調的にCD4親和性を増加させ、ウイルス増殖を促進する.2017

    • Author(s)
      Nakanishi, S., Watanabe, S., Doi, N., Koma, T., Adachi, A., and Nomaguchi, M.
    • Organizer
      第65回日本ウイルス学会学術集会
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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