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Whole genome analysis of congenital malformations

Research Project

Project/Area Number 17K10069
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Pediatrics
Research InstitutionKanagawa Children's Medical Center (Clinical Research Institute)

Principal Investigator

Kurosawa Kenji  地方独立行政法人神奈川県立病院機構神奈川県立こども医療センター(臨床研究所), 臨床研究所, 部門長 (20277031)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2019: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2018: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2017: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords先天異常 / 先天多発奇形 / エクソーム / マイクロアレイ / 遺伝カウンセリング / 遺伝的異質性 / 遺伝子 / ゲノム / 精神遅滞
Outline of Final Research Achievements

Genetic research of congenital malformations of unknown etiology provides clues to clarify underlying mechanisms of pathophysiology and the universal function of genes involved in human development. We studied the patients with multiple congenital malformations using the whole exome sequencing and comprehensive genome analysis. During the study period, we identified several disease causing variants in the patients, including the new syndrome associated Desbuquois dysplasia caused by biallelic novel variants in FAM20B. Although the results were not directly related to treatment strategy, they will provide insight into the consideration of the pathological mechanisms and genetic counseling.

Academic Significance and Societal Importance of the Research Achievements

研究によって、これまで報告のない遺伝子ゲノムの異常が、発症ならびに病態形成にかかわることを複数の家系で明らかにした。この中には、新規疾患概念の確立となったFAM20B遺伝子の両アレル性変異によるこれまで報告のない新しいDesbuquiois dysplasia類縁疾患(Kuroda et al., 2019)も含まれた。また、新しい病態を示した例として、Ellis-van Creveld症候群の1家系も報告した(Ohashi et al., 2019)。今回の結果は、直接の治療戦略には結びつかないものの、病態解析や遺伝カウンセリングに極めて有用な情報となった。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (48 results)

All 2020 2019 2018 2017

All Journal Article (20 results) (of which Peer Reviewed: 18 results,  Open Access: 9 results) Presentation (27 results) (of which Int'l Joint Research: 12 results,  Invited: 3 results) Book (1 results)

  • [Journal Article] Novel CUL7 biallelic mutations alter the skeletal phenotype of 3M syndrome2020

    • Author(s)
      Takizaki Nao、Tsurusaki Yoshinori、Katsumata Kaoru、Enomoto Yumi、Murakami Hiroaki、Muroya Koji、Ishikawa Hiroshi、Aida Noriko、Nishimura Gen、Kurosawa Kenji
    • Journal Title

      Human Genome Variation

      Volume: 7 Issue: 1 Pages: 1-1

    • DOI

      10.1038/s41439-020-0090-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A novel gene (FAM20B encoding glycosaminoglycan xylosylkinase) for neonatal short limb dysplasia resembling Desbuquois dysplasia2019

    • Author(s)
      Kuroda Yukiko、Murakami Hiroaki、Enomoto Yumi、Tsurusaki Yoshinori、Takahashi Kazumi、Mitsuzuka Kanako、Ishimoto Hitoshi、Nishimura Gen、Kurosawa Kenji
    • Journal Title

      Clinical Genetics

      Volume: 印刷中 Issue: 6 Pages: 713-717

    • DOI

      10.1111/cge.13530

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Two unrelated girls with intellectual disability associated with a truncating mutation in the PPM1D penultimate exon2019

    • Author(s)
      Kuroda Yukiko、Murakami Hiroaki、Yokoi Takayuki、Kumaki Tatsuro、Enomoto Yumi、Tsurusaki Yoshinori、Kurosawa Kenji
    • Journal Title

      Brain and Development

      Volume: 41 Issue: 6 Pages: 538-541

    • DOI

      10.1016/j.braindev.2019.02.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Discordant phenotype caused by CASK mutation in siblings with NF12019

    • Author(s)
      Murakami Hiroaki、Kimura Yuichi、Enomoto Yumi、Tsurusaki Yoshinori、Akahira-Azuma Moe、Kuroda Yukiko、Tsuji Megumi、Goto Tomohide、Kurosawa Kenji
    • Journal Title

      Human Genome Variation

      Volume: 6 Issue: 1 Pages: 20-20

    • DOI

      10.1038/s41439-019-0051-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Developmental delay and dysmorphic features in a girl with a de novo 5.4 Mb deletion of 13q12.11‐q12.132019

    • Author(s)
      Tominaga Makiko、Saito Toshiyuki、Masuno Mitsuo、Umeda You、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: 60 Issue: 2 Pages: 73-74

    • DOI

      10.1111/cga.12346

    • NAID

      210000156377

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Refinement of 16p13.3 microdeletion syndrome from a case presentation of a girl with epilepsy and intellectual disability2019

    • Author(s)
      Kuroda Yukiko、Kimura Yuichi、Uehara Tomoko、Kosaki Kenjiro、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: 60 Issue: 2 Pages: 75-77

    • DOI

      10.1111/cga.12347

    • NAID

      210000156474

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A female patient with X‐linked Ohdo syndrome of the Maat‐Kievit‐Brunner phenotype caused by a novel variant of MED122019

    • Author(s)
      Murakami Hiroaki、Enomoto Yumi、Tsurusaki Yoshinori、Sugio Yoshitsugu、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: - Issue: 3 Pages: 91-93

    • DOI

      10.1111/cga.12350

    • NAID

      210000156667

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tracheal cartilaginous sleeve in patients with Beare‐Stevenson syndrome2019

    • Author(s)
      Seki Eijun、Enomoto Keisuke、Tanoue Koji、Tanaka Mio、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: - Issue: 3 Pages: 97-99

    • DOI

      10.1111/cga.12352

    • NAID

      210000156871

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tumor predisposition in an individual with chromosomal rearrangements of 1q31.2‐q41 encompassing cell division cycle protein 732019

    • Author(s)
      Nishimura Naoto、Murakami Hiroaki、Saito Toshiyuki、Masuno Mitsuo、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: - Issue: 4 Pages: 128-130

    • DOI

      10.1111/cga.12356

    • NAID

      210000157312

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diamond-Blackfan anemia caused by chromosome 1p22 deletion encompassing RPL52019

    • Author(s)
      Tominaga Makiko、Hamanoue Satoshi、Goto Hiroaki、Saito Toshiyuki、Nagai Jun-ichi、Masuno Mitsuo、Umeda You、Kurosawa Kenji
    • Journal Title

      Human Genome Variation

      Volume: 6 Issue: 1 Pages: 36-36

    • DOI

      10.1038/s41439-019-0067-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A severe form of Ellis-van Creveld syndrome caused by novel mutations in EVC22019

    • Author(s)
      Ohashi Ikuko、Enomoto Yumi、Naruto Takuya、Tsurusaki Yoshinori、Kuroda Yukiko、Ishikawa Hiroshi、Ohyama Makiko、Aida Noriko、Nishimura Gen、Kurosawa Kenji
    • Journal Title

      Human Genome Variation

      Volume: 6 Issue: 1 Pages: 40-40

    • DOI

      10.1038/s41439-019-0071-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel USP9X variants in two patients with X-linked intellectual disability2019

    • Author(s)
      Tsurusaki Yoshinori、Kuroda Yukiko、Yamanouchi Yasuko、Kondo Eisuke、Ouchi Kazunobu、Kimura Yuichi、Enomoto Yumi、Aida Noriko、Masuno Mitsuo、Kurosawa Kenji
    • Journal Title

      Human Genome Variation

      Volume: 6 Issue: 1 Pages: 49-49

    • DOI

      10.1038/s41439-019-0081-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel COL4A1 mutation in a fetus with early prenatal onset of schizencephaly.2018

    • Author(s)
      Sato Y, Shibasaki J, Aida N, Hiiragi K, Kimura Y, Akahira-Azuma M, Enomoto Y, Tsurusaki Y, Kurosawa K.
    • Journal Title

      Human Genome Variation

      Volume: 5 Issue: 1 Pages: 4-4

    • DOI

      10.1038/s41439-018-0005-y

    • Related Report
      2018 Research-status Report 2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Familial total anomalous pulmonary venous return with 15q11.2 (BP1-BP2) microdeletion2018

    • Author(s)
      Kuroda Yukiko、Ohashi Ikuko、Naruto Takuya、Ida Kazumi、Enomoto Yumi、Saito Toshiyuki、Nagai Jun-ichi、Yanagi Sadamitsu、Ueda Hideaki、Kurosawa Kenji
    • Journal Title

      Journal of Human Genetics

      Volume: 63 Issue: 11 Pages: 1185-1188

    • DOI

      10.1038/s10038-018-0499-7

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Evaluation of a patient with classical Ehlers-Danlos syndrome due to a 9q34 duplication affecting COL5A12018

    • Author(s)
      Kuroda Yukiko、Ohashi Ikuko、Naruto Takuya、Ida Kazumi、Enomoto Yumi、Saito Toshiyuki、Nagai Jun-ichi、Kurosawa Kenji
    • Journal Title

      Congenital Anomalies

      Volume: 58 Issue: 6 Pages: 191-193

    • DOI

      10.1111/cga.12277

    • NAID

      50014141736

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 希少難病における診断・治療の進歩2018

    • Author(s)
      黒澤健司
    • Journal Title

      こども医療センター医学誌

      Volume: 47 Pages: 76-78

    • Related Report
      2018 Research-status Report
    • Peer Reviewed
  • [Journal Article] Kabuki症候群(Niikawa-Kuroki症候群) 小児疾患の診断治療基準第5版2018

    • Author(s)
      黒澤健司
    • Journal Title

      小児内科

      Volume: 50 Pages: 142-143

    • Related Report
      2018 Research-status Report
  • [Journal Article] ヤング・シンプソン症候群2018

    • Author(s)
      黒澤健司
    • Journal Title

      新薬と臨床

      Volume: 67 Pages: 1371-1374

    • Related Report
      2018 Research-status Report
  • [Journal Article] A novel SYNGAP1 variant in a patient with intellectual disability and distinctive dysmorphisms.2018

    • Author(s)
      Kimura Y, Akahira-Azuma N, Harada N, Enomoto Y, Tsurusaki Y, Kurosawa K.
    • Journal Title

      Congenit Anom (Kyoto)

      Volume: 印刷中 Issue: 6 Pages: 188-190

    • DOI

      10.1111/cga.12273

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] A novel AMER1 frameshift mutation in a girl with osteopathia striata with cranial sclerosis.2017

    • Author(s)
      Enomoto Y, Tsurusaki Y, Harada N, Aida N, Kurosawa K.
    • Journal Title

      Congenit Anom (Kyoto).

      Volume: 印刷中 Issue: 4 Pages: 145-146

    • DOI

      10.1111/cga.12258

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 先天異常症候群のみかた・考え方2019

    • Author(s)
      黒澤健司
    • Organizer
      第43回日本口蓋裂学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Developmental delay and dysmorphic features in a girl with a de novo 5.4 Mb deletion of 13q12.11-q12.13.2019

    • Author(s)
      Kurosawa K, Tominaga M, Saito T, Umeda Y, Masuno M.
    • Organizer
      第59回日本先天異常学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] The refinement of 16p13.3 microdeletion syndrome from a case presentation of a girl with epilepsy, intellectual disability, and distinctive dysmorphic features.2019

    • Author(s)
      Kuroda Y, Murakami H, Kimura Y, Enomoto Y, Tsurusaki Y, Uehara T, Kosaki K, Kurosawa K.
    • Organizer
      American Society of Human Genetics 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Tracheal cartilaginous sleeve in patients with Beare-Stevenson syndrome.2019

    • Author(s)
      Kurosawa K, Seki E, Enomoto K, Tanoue K, Tanaka M.
    • Organizer
      American Society of Human Genetics 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Novel mutation in MT-ND1 m.3955G>A related to neonatal onset Leigh syndrome with spinal lesion.2019

    • Author(s)
      Kumaki T, Shimbo H, Goto T, Enomoto Y, Aida N, Murayama K, Nishino I, Goto Y, Kurosawa K.
    • Organizer
      American Society of Human Genetics 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 髄鞘化遅延、脳梁低形成を認めFOXG1遺伝子変異が同定された1女児例.2018

    • Author(s)
      小林良行, 石川暢恒, 谷博雄, 小林正夫, 兵頭純夫, 黒澤健司
    • Organizer
      第121回日本小児科学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] 8染色体トリソミーモザイク症候群経過中にベーチェット病様症状(BD)を呈した2例.2018

    • Author(s)
      辻真理奈, 豊福悦史, 野澤智, 鹿間芳明, 赤平百絵 黒澤健司, 今川智之
    • Organizer
      第121回日本小児科学会学術集会
    • Related Report
      2018 Research-status Report
  • [Presentation] カルバマゼピンとアセタゾラミドが有効だった先天性ミオトニア2018

    • Author(s)
      市川和志、熊木達郎、山本亜矢子、成健史、露崎悠、辻恵、井合瑞江、山下純正、黒澤健司、後藤知英
    • Organizer
      第60回日本小児神経学会
    • Related Report
      2018 Research-status Report
  • [Presentation] Biallelic homozygous mutation of HSPG2 in a patient with dyssegmental dysplasia, Rolland-Desbuquois type.2018

    • Author(s)
      Kurosawa K, Shono K, Yokoi T, Harada N, Akahira-Azuma M, Enomoto Y, Tsurusaki Y, Aida N.
    • Organizer
      European Human Genetics Conference 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 染色体微細構造異常の解析と臨床2018

    • Author(s)
      黒澤健司
    • Organizer
      第58回日本先天異常学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] CASK遺伝子異常による重度精神発達異常を合併した神経線維腫症1型(NF1)の女児例2018

    • Author(s)
      村上博昭 黒田友紀子 黒澤健司 辻恵
    • Organizer
      第353回日本小児科学会神奈川県地方会
    • Related Report
      2018 Research-status Report
  • [Presentation] 各診療科が考えるNoonan症候群マネジメント-小児遺伝科医の立場から2018

    • Author(s)
      黒澤健司
    • Organizer
      第52回日本小児内分泌学会
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] 短肋骨異形成症と内臓錯位症候群を合併した一例2018

    • Author(s)
      柊一哉、石川浩史、長瀬寛美、望月昭彦、西川智子、鶴崎美徳、黒澤健司
    • Organizer
      日本人類遺伝学会第63回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] PPM1Dのエクソン5に変異を認めた知的障害の一女児例2018

    • Author(s)
      黒田友紀子、村上博昭、横井貴之、榎本友美、鶴崎美徳、黒澤健司
    • Organizer
      日本人類遺伝学会第63回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] RECQL4遺伝子の日本人由来ホモ欠失をもった患者における表現型の多様性2018

    • Author(s)
      榎本友美、鶴崎美徳、黒田友紀子、村上博昭、木村雄一、成戸卓也、下風朋章、黒澤健司
    • Organizer
      日本人類遺伝学会第63回大会
    • Related Report
      2018 Research-status Report
  • [Presentation] 9q34.11 deletion, including DNM1 and SPTAN1 but lacking STXBP1 causes a distinctive phenotype with intellectual disability, speech delay, and dysmorphic facial features.2018

    • Author(s)
      Kurosawa K, Harada N, Saito T, Enomoto Y, Tsurusaki Y, Murakami H, Kuroda Y, Masuno M.
    • Organizer
      American Society of Human Genetics 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Causative novel USP9X variants in two Japanese patients with X-linked intellectual disability.2018

    • Author(s)
      Tsurusaki Y, Kuroda Y, Murakami H, Enomoto Y, Kimura Y, Yamanouchi Y, Kondoh E, Ouchi K, Masuno M, Kurosawa K.
    • Organizer
      American Society of Human Genetics 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] A novel X-linked dominant mutation of MED12 causes Ohdo syndrome in a female patient.2018

    • Author(s)
      Murakami H, Kimura Y, Enomoto Y, Tsurusaki Y, Kuroda Y, Sugio Y, Kurosawa K
    • Organizer
      American Society of Human Genetics 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] De novo PHF6 mutation in a girl with Borjeson-Forssman-Lehmann syndrome.2018

    • Author(s)
      Kuroda Y, Murakami H, Enomoto Y, Tsurusaki Y, Uehara T, Kosaki K, Kurosawa K
    • Organizer
      American Society of Human Genetics 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Whole exome sequence identified the deletion in 5' UTR or upstream intronic region of CREBBP in a patient with Rubinstein-Taybi syndrome.2018

    • Author(s)
      Enomoto Y, Tsurusaki Y, Kuroda Y, Murakami H, Ida K, Umegae M, Harada N, Kimura Y, Naruto T, Kurosawa K
    • Organizer
      American Society of Human Genetics 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] 同種骨髄移植を行ったcongenital dyserythropoietic anemia II型の一例.2017

    • Author(s)
      杉山正仲、浜之上聡、慶野大、宮川直将、林亜揮子、横須賀とも子、岩崎史記、塩味正栄 黒澤健司 後藤裕明
    • Organizer
      第120回日本小児科学会
    • Related Report
      2017 Research-status Report
  • [Presentation] IgAおよびIgG2欠損と小脳虫部萎縮を呈したMECP2重複症候群の1例2017

    • Author(s)
      松井秀司、黒澤健司
    • Organizer
      第59回日本小児神経学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] TBL1XR1遺伝子に新規変異を認めた知的障害、自閉スペクトラム症および特異顔貌を示す1症例2017

    • Author(s)
      湊川真理、横井貴之、榎本友美、井田一美、鶴崎美徳、原田法彰、成戸卓也、黒澤健司
    • Organizer
      第59回日本小児神経学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] FOXG1遺伝子変異の脳梁形態とその他の画像的特徴についての検討2017

    • Author(s)
      露崎悠、市川和志、辻恵、井合瑞江、山下純正、藤井裕太、野澤久美子、相田典子、湊川真理、横井貴之、黒澤健司、富安もよこ、才津浩智、松本直通、後藤知英
    • Organizer
      第59回日本小児神経学会学術集会
    • Related Report
      2017 Research-status Report
  • [Presentation] Microdeletion of 17q21.31 causes a novel malformation syndrome.2017

    • Author(s)
      Kurosawa K, Minatogawa M, Yokoi T, Enomoto Y, Ida K, Harada N, Nagai J, Tsurusaki Y.
    • Organizer
      American Society of Human Genetics 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Familial TAPVR with 15q11.2 (BP1-BP2) microdeletion.2017

    • Author(s)
      Kuroda Y, Ohashi I, Naruto T, Ida K, Enomoto Y, Saito T, Nagai J, Kurosawa K.
    • Organizer
      American Society of Human Genetics 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Novel AHDC1 mutations cause intellectual disability and developmental delay.2017

    • Author(s)
      Tsurusaki Y, Enomoto Y, Ida K, Kurosawa K.
    • Organizer
      American Society of Human Genetics 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Book] ヌーナン症候群のマネジメント2017

    • Author(s)
      黒澤健司
    • Total Pages
      117
    • Publisher
      メディカルレビュー社
    • Related Report
      2017 Research-status Report

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Published: 2017-04-28   Modified: 2021-02-19  

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