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Cultivation, isolation and characterization of yet-uncultivated microorganisms dominated in sedimentary environments

Research Project

Project/Area Number 17K15183
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

Katayama Taiki  国立研究開発法人産業技術総合研究所, 地質調査総合センター, 主任研究員 (40549896)

Project Period (FY) 2017-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2019: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2018: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords堆積物環境 / メタン生成アーキア / 共生 / 新門 / 分離培養 / 微生物 / 新門候補 / 未培養 / メタン / 細胞膜 / 培養 / メタゲノム / 未培養微生物 / メタン生成
Outline of Final Research Achievements

Most of microorganisms abundant in sedimentary environments are uncultured. To determine their physiological and ecological roles and accurate taxonomic positions, sediment and formation water samples were cultured based on the findings from omics analysis. We successfully isolated a bacterium, strain RT761, belonging to the yet-to-be-cultured candidate phylum ‘Ca. Atribacteria’ (formerly called OP9) that are ubiquitous and abundant in anoxic environments favoring fermentation and syntrophy. RT761 is an obligatory anaerobic gram-negative bacterium that compartmentalizes its nucleoid in an intracytoplasmic membrane unlinked to the cell wall. RT761 primarily produces hydrogen for electron disposal during sugar degradation and its growth is improved by co-cultivation with a hydrogen-scavenging methanogen.

Academic Significance and Societal Importance of the Research Achievements

RT761株の帰属する新門候補Atribacteriaは、堆積物環境での優占性から生態学的に着目されていたが、1998年に遺伝子として発見されてから約20年間一度も培養例がなかった。本研究にて世界で初めて純粋培養に成功し、その実体が明らかとなった。また、原核生物では最も高次の分類階級「門」レベルで新規な菌であり、分類・進化学的にも重要な発見となった。特に、原核細胞の定義を覆す核様体を包む膜の存在は、細胞生物学にも非常に興味深い発見であり、大きな波及効果をもたらす。

Report

(4 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (2 results)

All 2019

All Journal Article (2 results) (of which Open Access: 1 results,  Peer Reviewed: 1 results)

  • [Journal Article] Membrane-bounded nucleoid discovered in a cultivated bacterium of the candidate phylum ‘Atribacteria’2019

    • Author(s)
      Katayama Taiki、Nobu Masaru K.、Kusada Hiroyuki、Meng Xian-Ying、Yoshioka Hideyoshi、Kamagata Yoichi、Tamaki Hideyuki
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/728279

    • Related Report
      2019 Annual Research Report
    • Open Access
  • [Journal Article] Microbial community structure in deep natural gas-bearing aquifers subjected to sulfate-containing fluid injection2019

    • Author(s)
      Katayama Taiki、Yoshioka Hideyoshi、Yamanaka Toshiro、Takeuchi Mio、Muramoto Yoshiyuki、Usami Jun、Ikeda Hidefumi、Sakata Susumu
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 127 Issue: 1 Pages: 45-51

    • DOI

      10.1016/j.jbiosc.2018.06.013

    • NAID

      40021783370

    • Related Report
      2018 Research-status Report
    • Peer Reviewed

URL: 

Published: 2017-04-28   Modified: 2021-02-19  

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