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Responses to the environment via changes in higher-order chromosome structures in Archaea

Research Project

Project/Area Number 17K15254
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionOsaka Dental University

Principal Investigator

Maruyama Hugo  大阪歯科大学, 歯学部, 助教 (90610296)

Project Period (FY) 2017-04-01 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2019: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsアーキア / 染色体高次構造 / histone / Alba / TrmBL2 / 遺伝子水平伝播 / 染色体タンパク質 / ヒストン / 環境応答 / 古細菌 / 染色体
Outline of Final Research Achievements

By comparing the chromosome structures of various Archaea species with different chromosomal proteins, we analyzed the differences in the principles of chromosome construction based on the combination of chromosomal proteins. The results showed that Archaea can be broadly classified into two groups: those with histones or HTa and a basic structure in which genomic DNA is wrapped around these proteins, and those without DNA wrapped around proteins. In addition, we proposed that TrmBL2 of hyperthermophilic Archaea has a function to repress gene expression at the time of foreign DNA acquisition (similar to that of bacterial H-NS). These results are important for considering the origin and evolution of chromosome structure in the three domains, including eukaryotes.

Academic Significance and Societal Importance of the Research Achievements

アーキアが極限環境だけではなく人体内や土壌中などの通常環境にも存在することや、アーキアとヒトの疾患との関連が明らかになりつつあり、アーキアの周辺環境に対する応答を理解する必要性が高まっている。本研究により、アーキアの系統により、多様な染色体構築原理が存在することが明らかとなった。真核生物の染色体構築システムは、アーキアのシステムを元に進化してきたと考えられている。特に、ヒストンを有するEuryarchaeota門のアーキアの染色体構築原理の解明を進めることは、真核細胞染色体の構造変化による環境応答を理解する助けとなる。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (14 results)

All 2021 2020 2019 2018 2017

All Journal Article (5 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 5 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Book (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Single-Molecule/Cell Analyses Reveal Principles of Genome-Folding Mechanisms in the Three Domains of Life2021

    • Author(s)
      Maruyama Hugo、Nambu Takayuki、Mashimo Chiho、Okinaga Toshinori、Takeyasu Kunio
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 24 Pages: 13432-13432

    • DOI

      10.3390/ijms222413432

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Different Proteins Mediate Step-Wise Chromosome Architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis2020

    • Author(s)
      Maruyama Hugo、Prieto Eloise I.、Nambu Takayuki、Mashimo Chiho、Kashiwagi Kosuke、Okinaga Toshinori、Atomi Haruyuki、Takeyasu Kunio
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.01247

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Different Proteins Mediate Step-wise Chromosome Architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis2020

    • Author(s)
      Maruyama Hugo、Prieto Eloise I.、Nambu Takayuki、Mashimo Chiho、Kashiwagi Kosuke、Okinaga Toshinori、Atomi Haruyuki、Takeyasu Kunio
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2020.03.13.982959

    • Related Report
      2019 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Nitric oxide donor modulates a multispecies oral bacterial community - an in vitro study.2019

    • Author(s)
      Takayuki Nambu, Dan Wang, Chiho Mashimo, Hugo Maruyama, Kosuke Kashiwagi, Kazushi Yoshikawa, Kazuyo Yamamoto, Toshinori Okinaga.
    • Journal Title

      Microorganisms

      Volume: 7 Issue: 9 Pages: 353-353

    • DOI

      10.3390/microorganisms7090353

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Compliance with infection control practices when taking dental x-rays: Survey of a Japanese dental school2018

    • Author(s)
      Gamoh Shoko、Akiyama Hironori、Maruyama Hugo、Ohshita Naohiro、Nakayama Masayuki、Matsumoto Kazuhiro、Yoshida Hiroaki、Ohkubo Tadashi、Kishimoto Naotaka、Mori Yui、Nakatsuka Michiko、Shimizutani Kimishige
    • Journal Title

      Clinical and Experimental Dental Research

      Volume: 4 Issue: 5 Pages: 158-166

    • DOI

      10.1002/cre2.124

    • Related Report
      2018 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] アーキアの染色体タンパク質と遺伝子水平伝播2019

    • Author(s)
      円山由郷
    • Organizer
      2019年度 国立遺伝学研究所研究会「環境中のDNA循環」
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] アーキアにおける水平伝播遺伝子の発現抑制機構に関するモデル2019

    • Author(s)
      円山由郷、大島拓、南部隆之、真下千穂、沖永敏則
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
  • [Presentation] ゲノム解析から明らかとなった口腔細菌叢バランスに関わる因子2018

    • Author(s)
      円山由郷, 南部隆之, 真下千穂, 沖永敏則, 川添堯彬.
    • Organizer
      第8回臨床ゲノム医療学会
    • Related Report
      2018 Research-status Report
  • [Presentation] アーキアにおける染色体構築機構の種間比較2018

    • Author(s)
      円山由郷, 南部隆之, 真下千穂, 沖永敏則.
    • Organizer
      第60回歯科基礎医学会
    • Related Report
      2018 Research-status Report
  • [Presentation] 口腔でショ糖非依存性にバイオフィルムを形成するActinomyces orisのゲノム解析.2018

    • Author(s)
      山根 一芳, 南部 隆之, 真下 千穂, 円山 由郷, 山中 武志
    • Organizer
      第12回ゲノム微生物学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] The roles of TrmBL2 protein on chromosome architecture and protection in Thermococcus kodakarensis.2017

    • Author(s)
      Maruyama H, Nambu T, Mashimo C, Atomi H, Takeyasu K
    • Organizer
      Gordon Research Conferences. Archaeae; Ecology, Metabolism and Molecular Biology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Book] Functions of archaeal nucleoid proteins: Archaeal silencers are still missing. In: Nishida H, Oshima T, editors. DNA Traffic in the Environment.2019

    • Author(s)
      Maruyama H, Kent NA, Nishida H, Oshima T.
    • Total Pages
      278
    • Publisher
      Springer Singapore
    • ISBN
      9789811334108
    • Related Report
      2018 Research-status Report
  • [Book] Atomic force microscopy imaging and analysis of prokaryotic genome organization. In: Dame RT, editor. Bacterial Chromatin: Methods and Protocols.2018

    • Author(s)
      Ohniwa RL, Maruyama H, Morikawa K, Takeyasu K. New York
    • Total Pages
      419
    • Publisher
      Springer New York
    • ISBN
      9781493986750
    • Related Report
      2018 Research-status Report
  • [Patent(Industrial Property Rights)] 口腔用組成物2019

    • Inventor(s)
      松村康史、榎本靖、沖永敏則、南部隆之、真下千穂、円山由郷
    • Industrial Property Rights Holder
      松村康史、榎本靖、沖永敏則、南部隆之、真下千穂、円山由郷
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2019-051147
    • Filing Date
      2019
    • Related Report
      2018 Research-status Report

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Published: 2017-04-28   Modified: 2023-01-30  

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