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Development of a new foldamer as a mimetic of alfa-helix

Research Project

Project/Area Number 17K15476
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Drug development chemistry
Research InstitutionHokkaido University

Principal Investigator

WATANABE Mizuki  北海道大学, 薬学研究院, 講師 (20507173)

Project Period (FY) 2017-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2018: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2017: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsペプチドミメティクス / 配座制御 / フォルダマー / ペプチド
Outline of Final Research Achievements

I designed of optically active cyclopropane δ-amino acid oligomers wth various stereochemistries and calculated their most stable conformation using MacroModel. As a result, a homo-oligomers of specific stereoisomer of an optically active cyclopropane δ-amino acid form stable, right-handed helix. Then, I synthesized the optically active cyclopropane δ-amino acid monomer from the optically active glycidol via a stereoselective Grignard reaction and an asymmetric alkylation using asymmetric auxiliary groups in 18 steps. After oligomerization to various lengths, CD measurement, NMR measurement, and X-ray crystal structure analysis of the three-dimensional structure were performed. As a result, it was found that a hexameric or higher oligomer forms a helical secondary structure as calculated.

Academic Significance and Societal Importance of the Research Achievements

タンパク質間相互作用の制御を狙ったペプチドミメティクスの開発研究は盛んになされているものの、普遍的な方法論といえるものが確立されているわけではない。本研究は、様々なタンパク質間相互作用に適用可能な一般性の高い新規ペプチドミメティクス開発方法論を提示・実践するものである。本研究の成果は、タンパク質間相互作用を標的としたペプチドミメティクス創薬の新たな基盤として発展する可能性を秘める。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (32 results)

All 2019 2018 2017

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Acknowledgement Compliant: 1 results) Presentation (24 results) (of which Int'l Joint Research: 6 results,  Invited: 3 results)

  • [Journal Article] Synthesis of Enantiomerically Pure 1,2,3-Trisubstituted Cyclopropane Nucleosides Using Pd-Catalyzed Substitution via Directing Group-Mediated C(sp3)?H Activation as a Key Step2019

    • Author(s)
      Minami Takaaki、Fukuda Kohtaro、Hoshiya Naoyuki、Fukuda Hayato、Watanabe Mizuki、Shuto Satoshi
    • Journal Title

      Organic Letters

      Volume: 21 Issue: 3 Pages: 656-659

    • DOI

      10.1021/acs.orglett.8b03785

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Live-cell imaging of multiple endogenous mRNAs permits the direct observation of RNA granule dynamics2018

    • Author(s)
      Yatsuzuka Kenji、Sato Shin-ichi、Pe Kathleen Beverly、Katsuda Yousuke、Takashima Ippei、Watanabe Mizuki、Uesugi Motonari
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 52 Pages: 7151-7154

    • DOI

      10.1039/c8cc03805h

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis of Chiral cis-Cyclopropane Bearing Indole and Chromone as Potential TNFα Inhibitors2018

    • Author(s)
      Kanada Ryutaro、Tanabe Makoto、Muromoto Ryuta、Sato Yukina、Kuwahara Tomoki、Fukuda Hayato、Arisawa Mitsuhiro、Matsuda Tadashi、Watanabe Mizuki、Shuto Satoshi
    • Journal Title

      The Journal of Organic Chemistry

      Volume: 83 Issue: 15 Pages: 7672-7682

    • DOI

      10.1021/acs.joc.8b00466

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Resolvin E1, but not resolvins E2 and E3, promotes fMLF-induced ROS generation in human neutrophils2018

    • Author(s)
      Unno Yuka、Sato Yoshinori、Fukuda Hayato、Ishimura Kohei、Ikeda Hiroyuki、Watanabe Mizuki、Tansho-Nagakawa Shigeru、Ubagai Tsuneyuki、Shuto Satoshi、Ono Yasuo
    • Journal Title

      FEBS Letters

      Volume: 592 Issue: 16 Pages: 2706

    • DOI

      10.1002/1873-3468.13215

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of cyclopropane-based conformationally restricted GABA analogues as selective inhibitors for betaine/GABA transporter 12018

    • Author(s)
      Suemasa Akihiro、Watanabe Mizuki、Kobayashi Takaaki、Suzuki Hiroe、Fukuda Hayato、Minami Masabumi、Shuto Satoshi
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 28 Issue: 20 Pages: 3395-3399

    • DOI

      10.1016/j.bmcl.2018.08.031

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design and synthesis of histamine H3/H4 receptor ligands with a cyclopropane scaffold2018

    • Author(s)
      Watanabe Mizuki、Kobayashi Takaaki、Ito Yoshihiko、Fukuda Hayato、Yamada Shizuo、Arisawa Mitsuhiro、Shuto Satoshi
    • Journal Title

      Bioorganic & Medicinal Chemistry Letters

      Volume: 28 Issue: 23-24 Pages: 3630-3633

    • DOI

      10.1016/j.bmcl.2018.10.041

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyclopropane-Based Peptidomimetics Mimicking Wide-Ranging Secondary Structures of Peptides: Conformational Analysis and Their Use in Rational Ligand Optimization.2017

    • Author(s)
      A. Mizuno, T. Kameda, T. Kuwahara, H. Endoh, Y. Ito, S. Yamada, K. Hasegawa, A. Yamano, M. Watanabe, M. Arisawa, S. Shuto
    • Journal Title

      Chem. Eur. J.

      Volume: 23 Issue: 13 Pages: 3159-3168

    • DOI

      10.1002/chem.201605312

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Synthesis of 8-Substituted Analogues of Cyclic ADP-4-Thioribose and Their Unexpected Identification as Ca2+-Mobilizing Full Agonists2017

    • Author(s)
      Takano Satoshi、Tsuzuki Takayoshi、Murayama Takashi、Kameda Tomoshi、Kumaki Yasuhiro、Sakurai Takashi、Fukuda Hayato、Watanabe Mizuki、Arisawa Mitsuhiro、Shuto Satoshi
    • Journal Title

      Journal of Medicinal Chemistry

      Volume: 60 Issue: 13 Pages: 5868-5875

    • DOI

      10.1021/acs.jmedchem.7b00540

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] スピロシクロプロパン型αヘリックス・βストランドミメティクスに基づくp53/MDM2結合阻害剤の創製2019

    • Author(s)
      桑原智希、水野彰、 竹内恒、広川貴次、浅井章良、渡邉瑞貴、周東智
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 環状ペプチド低分子化方法論の確立を目指した三次元多様型シクロプパンペチドミメティスの開発研究 三次元多様型シクロプパンペチドミメティスの開発研究2019

    • Author(s)
      杉山洸, 一ノ瀬亘, 広川貴次, 渡邉瑞貴, 周東智
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 炎症収束脂質レゾルビン E2のスキップジエン構造をベンゼン環で置換した安定等価体創製研究2019

    • Author(s)
      村上 侑斗, 福田 隼, 石村 航平, 平島 洸基, 室本 竜太, 渡邉 瑞貴, 松田 正, 周東 智
    • Organizer
      日本薬学会第139年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ペプチドの"形"を制御して"機能"を変える2018

    • Author(s)
      渡邉瑞貴
    • Organizer
      第50回若手ペプチド夏の勉強会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] シクロプロパン δ-アミノ酸を基盤とした新規フォルダマーの創製研究2018

    • Author(s)
      永田真、桑原智希、 一ノ瀬亘、 渡邉瑞貴、周東智
    • Organizer
      日本薬学会北海道支部第 145回例会
    • Related Report
      2018 Annual Research Report
  • [Presentation] アデノホスチンAをリードとしたIP3検出プローブの創出2018

    • Author(s)
      渡邉瑞貴、森川優輝、大浦泰、福田隼、森田貴雄、谷村明彦、周東智
    • Organizer
      日本ケミカルバイオロジー学会 第13回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] サイトトリエニンAの合成研究2018

    • Author(s)
      佐藤晋平,福田隼,渡邉瑞貴,周東智
    • Organizer
      第30回万有札幌シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Synthetic Study of Cytotrienin A2018

    • Author(s)
      Shimpei Sato, Hayato Fukuda, Mizuki Watanabe, Satoshi Shuto
    • Organizer
      7th EuCheMS Chemistry Congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] サイトトリエニンAの合成研究2018

    • Author(s)
      佐藤晋平,福田隼,渡邉瑞貴,周東智
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Pd触媒を用いたC(sp3)-H活性化反応を鍵段階とする光学活性1,2,3-三置換シクロプロパンヌクレオシドの合成2018

    • Author(s)
      南貴覚,福多洸太朗,星谷尚亨,福田隼,渡邉瑞貴,周東智
    • Organizer
      第44回反応と合成の進歩シンポジウム
    • Related Report
      2018 Annual Research Report
  • [Presentation] Conformationally Restricted Cyclic Peptides Based on the Structural Properties of Cyclopropane2018

    • Author(s)
      Mizuki Watanabe, Mai Uemura, Yukina Sato, Nanami Kato, Yoh Takekuma, Mitsuru Sugawara, Koh Takeuchi, Satoshi Shuto
    • Organizer
      8th Peptide Enginierring Meeting (PEM8-2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Improvement of Membrane Permeability of Cyclic Peptides By Conformational Restriction Using Cyclopropane2018

    • Author(s)
      Mizuki Watanabe, Yukina Sato, Mai Uemura, Nanami Kato, Kouhei Matsui, Hayato Fukuda, Yoh Takekuma, Mitsuru Sugawara, Satoshi Shuto
    • Organizer
      10th International Peptide Symposium(第55回ペプチド討論会)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Improvement of Membrane Permeability of Cyclic Peptides By Conformational Restriction Using Cyclopropane2018

    • Author(s)
      Mizuki Watanabe, Yukina Sato, Mai Uemura, Nanami Kato, Kouhei Matsui, Hayato Fukuda, Yoh Takekuma, Mitsuru Sugawara, Satoshi Shuto
    • Organizer
      The 24th Peptide Forum in Kyoto, 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] GABAトランスポーターサブタイプ選択的阻害剤の創出を目的とするGABA配座制限誘導体の設計と合成2018

    • Author(s)
      末政亮大、中田和彰、小林嵩明、福田隼、渡邉瑞貴、井手聡一郎、人羅菜津子、南雅文、周東智
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Research-status Report
  • [Presentation] trans-1, 2-シクロプロパンジアミンおよびジカルボン酸からなるオリゴアミドの合成研究2018

    • Author(s)
      山田 圭恭, 一ノ瀬 亘, 福田 隼, 渡邉 瑞貴, 周東智
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Research-status Report
  • [Presentation] シクロプロパンの構造特性に基づく膜透過性環状ペプチドの設計と合成2018

    • Author(s)
      植村真衣, 加藤七海,松井耕平, 桑原智希, 渡邉瑞貴, 福田隼, 竹内恒, 広川貴次, 武隈洋, 菅原 満, 周東 智
    • Organizer
      日本薬学会第138年会
    • Related Report
      2017 Research-status Report
  • [Presentation] cADPR 安定アンタゴニストの創製を目指し た1-アルキル-3-デアザアデニン骨格の合成2017

    • Author(s)
      山田真輝、金田龍太郎、高木耕治 福田隼、渡邉瑞貴、周東智
    • Organizer
      第64回北海道薬学大会 (薬学会支部 第144回例会)
    • Related Report
      2017 Research-status Report
  • [Presentation] 炎症収束性脂質レゾルビンE1配座制限誘導体の設計と合成2017

    • Author(s)
      石村 航平,室本 竜太,平島 洸基,福田 隼,渡邉 瑞貴,松田 正, 周東 智
    • Organizer
      第15回次世代を担う有機化学シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 光学活性1,2,3-三置換シクロプロパンヌクレオシドの合成2017

    • Author(s)
      南貴覚、福多洸太朗、星谷尚亨、福田隼、渡邉瑞貴、周東智
    • Organizer
      第29回万有札幌シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] Spiro-cyclopropane type α-helix/β-strand mimimetics targeting protein-protein interactions2017

    • Author(s)
      Tomoki Kuwahara, Akira Mizuno, Hayato Fukuda, Mizuki Watanabe, Satoshi Shuto
    • Organizer
      254th ACS National Meeting & Exposition
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Development of Conformationally Restricted Peptides and Peptidomimetics Based on the Structural Features of Cyclopropane2017

    • Author(s)
      Mizuki Watanabe
    • Organizer
      The 3rd HU-TMU-KU Joint Symposium for Pharmaceutical Sciences
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 1-アルキル-3-デアザアデニン環の構築を鍵とした3-デアザ-cADPcRの合成2017

    • Author(s)
      山田真輝、金田龍太郎、高木耕治、福田隼、渡邉瑞貴、周東智
    • Organizer
      第47回複素環化学討論会
    • Related Report
      2017 Research-status Report
  • [Presentation] シクロプロパンの立体及び立体電子特性に基づくペプチドミメティクス ―αヘリックス/βストランドミメティクス及び膜透過ミメティクスの開発―2017

    • Author(s)
      桑原智希,植村真衣,水野彰,一ノ瀬亘,松井耕平,福田隼,渡邉瑞貴,周東智
    • Organizer
      第43回反応と合成の進歩シンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] 配座制御を基盤とした機能性ペプチドの開発2017

    • Author(s)
      渡邉瑞貴
    • Organizer
      若手研究者のための有機化学札幌セミナー
    • Related Report
      2017 Research-status Report
    • Invited

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Published: 2017-04-28   Modified: 2020-03-30  

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