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Isothermal DNA Sequencing by Diffusion Current in a MoS2 Nanopore

Research Project

Project/Area Number 17K17682
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biomedical engineering/Biomaterial science and engineering
Nano/Microsystems
Research InstitutionThe University of Tokyo

Principal Investigator

HSU Wei-Lun  東京大学, 大学院工学系研究科(工学部), 講師 (50771549)

Research Collaborator DAIGUJI Hirofumi  
IWASA Yoshihiro  
ABE Eiji  
YING Yi-Lun  
LONG Yi-Tao  
Project Period (FY) 2017-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsNanopore / DNA sequencing / Bionanosensing / Diffusiophoresis / 2D materials / Joule heating / Diffusion current / Two-dimensional material / Biosensing / 2D material / Ion transport / Electrokinetics / Precision medicine / Drug delivery / ナノチューブ / マイクロ・ナノデバイス / 分析科学 / 生体分子
Outline of Final Research Achievements

Since the concept of resistive pulse sensing using solid-state nanopore was envisaged in the beginning of this century, there have been tremendous expectations for DNA sequencing by artificial nanopores. However, researchers fail to show DNA structural information using conventional methods based on conduction current and electrophoretic transport of molecules. This project has both experimentally and theoretically investigated an effective approach using diffusion current and diffusiophoretic transport of molecules that enables us to probe structural information of ssDNA molecules. By tracing the diffusive current variation through a monolayer molybdenum disulfide nanopore using an ultra-low current measurement system, we are able to reveal four levels of current signals representing different nucleotide acids. Using theoretical simulations, we conclude that the improved results are due to the reduced DNA translocation speed and elimination of Joule heating.

Academic Significance and Societal Importance of the Research Achievements

This project has made a remarkable progress by increasing the nanopore sensing resolution, which paves the way for DNA sequencing using solid-state nanopores. This breakthrough not only opens up new opportunities for molecule sequencing, but provides hopes to high resolution proteomic analysis.

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 Other

All Int'l Joint Research (4 results) Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results) Presentation (7 results) (of which Int'l Joint Research: 7 results,  Invited: 7 results) Remarks (1 results) Funded Workshop (2 results)

  • [Int'l Joint Research] Nanjing University/East China Univ. of Sci. and Techno.(中国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Imperial College London(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] The University of Melbourne(Australia)

    • Related Report
      2017 Research-status Report
  • [Int'l Joint Research] East China Univ. of Sci. and Technol.(中国)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Theory of Transport-Induced-Charge Electroosmotic Pumping toward Alternating Current Resistive Pulse Sensing2018

    • Author(s)
      Wei-Lun Hsu, Junho Hwang, and Hirofumi Daiguji
    • Journal Title

      ACS Sensors

      Volume: 3(11) Issue: 11 Pages: 2320-2326

    • DOI

      10.1021/acssensors.8b00635

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Viscoelectric Effects in Nanochannel Electrokinetics2017

    • Author(s)
      Wei-Lun Hsu, Dalton JE Harvie, Malcolm R Davidson, Dave E Dunstan, Junho Hwang, Hirofumi Daiguji
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 121 Issue: 37 Pages: 20517-20523

    • DOI

      10.1021/acs.jpcc.7b06798

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Non-linear Electrokinetics in Nanopores2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      The 65th TwICHE Annual Conference, International Symposium on Transport Phenomena and Applications
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Induced Reverse Electroosmotic Flow for Nanopore Sensing2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      The International Chemistry Symposium Frontiers in Sensors Innovation
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Homogeneous Electrokinetic Phenomena in a Thin Nanopore2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      The European Advanced Energy Materials and Technology Congress
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Homogeneous Electrokinetic Phenomena in a Thin Nanopore2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      The 4th Annual World Congress of Smart Materials
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Homogeneous electrokinetic phenomena in a thin nanopore2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      4th Annual World Congress of Smart Materials
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Homogeneous electrokinetic phenomena in a thin nanopore2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      Advanced Energy Materials Congress 2018
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Induced reverse electroosmotic flow for nanopore sensing2018

    • Author(s)
      Wei-Lun Hsu
    • Organizer
      International Chemistry Symposium: Frontiers in Sensors Innovation
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] Daiguji & Hsu Lab - Publications

    • URL

      http://www.thml.t.u-tokyo.ac.jp/en/publications.html

    • Related Report
      2018 Annual Research Report
  • [Funded Workshop] The 262nd Graduate Program for Mechanical Innovation Seminar2018

    • Related Report
      2018 Annual Research Report
  • [Funded Workshop] The 260th Graduate Program for Mechanical Innovation Seminar2018

    • Related Report
      2018 Annual Research Report

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Published: 2017-04-28   Modified: 2023-01-30  

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