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Old and new structural inorganicbiochemistry on blue copper proteins

Research Project

Project/Area Number 17K17862
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Bio-related chemistry
Research InstitutionOsaka University

Principal Investigator

Fukuda Yohta  大阪大学, 工学研究科, 助教 (20783179)

Project Period (FY) 2017-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2017: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsブルー銅タンパク質 / 結晶構造解析 / 銅タンパク質 / 生物無機 / 生物無機化学
Outline of Final Research Achievements

The purposes of this project about blue copper proteins (BCPs) are i) structural and functional analysis of a tandem-type BCP (Tan-BCP), 2) structural and functional analysis of a new BCP, CinA, and 3) construction of an artificial BCP enzyme. i) I could purify a Tan-BCP but could not crystallize because it showed low purity and did not include a Cu ion. ii) I made several constructs. None of them gave crystals large enough to investigate with X-ray crystallography. iii) I obtained N-terminal domain of copper nitrite reductases (NIRs) as an artificial enzyme. Though my original research proposal did not include a project about CPR-NIR that is from a CPR bacterium, I purified and analyzed it to reveal that CPR-NIR is different from known NIRs.

Academic Significance and Societal Importance of the Research Achievements

構造生物学の歴史おいて、BCPは比較的初期の頃から構造解析がおこなわれてきたタンパク質であり、基本的なことはもう調べつくされたかに思われている。そのためか、近年のゲノム解析で新しいBCPが見つかってきているにも関わらず、それらについての構造生物学的研究はほとんど進んでいないのが現状である。本研究では、当初の計画には無かったものの、ごく最近発見されたCPRバクテリア由来の新規なBCPのひとつについて構造機能解析をおこなうことができた。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (8 results)

All 2018 2017 Other

All Int'l Joint Research (2 results) Journal Article (6 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results)

  • [Int'l Joint Research] The University of British Columbia(カナダ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] The University of British Columbia(カナダ)

    • Related Report
      2017 Research-status Report
  • [Journal Article] Crystal structure of secretory abundant heat soluble protein 4 from one of the toughest “water bears” micro-animals Ramazzottius varieornatus2018

    • Author(s)
      Fukuda Yohta、Inoue Tsuyoshi
    • Journal Title

      Protein Science

      Volume: 印刷中 Issue: 5 Pages: 993-999

    • DOI

      10.1002/pro.3393

    • Related Report
      2018 Annual Research Report 2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans2018

    • Author(s)
      Fukuda Yohta、Matsusaki Takuro、Tse Ka Man、Mizohata Eiichi、Murphy Michael E. P.、Inoue Tsuyoshi
    • Journal Title

      Acta Crystallographica Section D Structural Biology

      Volume: 74 Issue: 8 Pages: 769-777

    • DOI

      10.1107/s2059798318010082

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus2018

    • Author(s)
      Kim JeeEun、Fukuda Yohta、Inoue Tsuyoshi
    • Journal Title

      The FEBS Journal

      Volume: 286 Issue: 7 Pages: 1287-1304

    • DOI

      10.1111/febs.14713

    • Related Report
      2018 Annual Research Report
  • [Journal Article] New molecular packing in a crystal of pseudoazurin from Alcaligenes faecalis: a double-helical arrangement of blue copper.2017

    • Author(s)
      Yohta Fukuda, Eiichi Mizohata and Tsuyoshi Inoue
    • Journal Title

      Acta Cryst. F

      Volume: 73 Issue: 3 Pages: 159-166

    • DOI

      10.1107/s2053230x17002631

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural insights into a secretory abundant heat-soluble protein from an anhydrobiotic tardigrade, Ramazzottius?varieornatus2017

    • Author(s)
      Fukuda Yohta、Miura Yoshimasa、Mizohata Eiichi、Inoue Tsuyoshi
    • Journal Title

      FEBS letters

      Volume: 591 Issue: 16 Pages: 2458-2469

    • DOI

      10.1002/1873-3468.12752

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology2017

    • Author(s)
      Mizohata Eiichi、Nakane Takanori、Fukuda Yohta、Nango Eriko、Iwata So
    • Journal Title

      Biophysical Reviews

      Volume: 10 Issue: 2 Pages: 209-218

    • DOI

      10.1007/s12551-017-0344-9

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access

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Published: 2017-04-28   Modified: 2020-03-30  

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