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Simultaneous visualization of transcriptional activity and 3D genomic structure

Research Project

Project/Area Number 17K18363
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field General pharmacology
General anatomy (including histology/embryology)
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Ariyoshi Tetsuro  国立研究開発法人理化学研究所, 生命機能科学研究センター, 研究員 (00782103)

Project Period (FY) 2017-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2018: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2017: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsRNA / 技術開発 / イメージング / ゲノム / 蛍光イメージング / mRNA / アプタマー
Outline of Final Research Achievements

The investigator used Romanesco, a fluorogenic RNA previously developed by the investigator, and succeeded in enhancing the sensitivity in Romanesco-based live-cell RNA imaging. Visualizing endogenous gene transcriptional dynamics at single-cell resolution has been achieved and transcriptional oscillation at single-cell level has been discovered. Simultaneous imaging of gene transcriptional dynamics and genomic DNA structural changes was also successful.

Academic Significance and Societal Importance of the Research Achievements

本研究の成果により遺伝子の発現が一つ一つの細胞の中でどのように変化していくのか計測できる技術基盤が確立された。細胞ごとの遺伝子発現の違いは人体を始めとする複雑な生命構造を形作る基盤となるメカニズムであるので、今後本研究成果の応用により幅広い生命科学分野で様々な発見が生み出されるであろうと期待される。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (8 results)

All 2019 2018 2017

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] A Highly Photostable Near-Infrared Labeling Agent Based on a Phospha-rhodamine for Long-Term and Deep Imaging2018

    • Author(s)
      Grzybowski Marek、Taki Masayasu、Senda Kieko、Sato Yoshikatsu、Ariyoshi Tetsuro、Okada Yasushi、Kawakami Ryosuke、Imamura Takeshi、Yamaguchi Shigehiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 57 Issue: 32 Pages: 10137-10141

    • DOI

      10.1002/anie.201804731

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Tips on live-cell super-resolution microscopy and its application in RNA imaging2019

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      第92回日本薬理学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Genetically-encoded fluorogenic RNA for imaging spatiotemporal mRNA dynamics at subcellular resolution2018

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      第70回日本細胞生物学会・第51回日本発生生物学会合同大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Visualizing spatiotemporal mRNA dynamics at subcellular resolution with a bright fluorogenic RNA2018

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      2018 ASCB | EMBO Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetically-encoded fluorescent RNA probe for visualizing transcriptional dynamics in live single cells2017

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      第69回日本細胞生物学会大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Visualization of transcriptional dynamics at single-cell resolution with a genetically-encoded fluorogenic RNA2017

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      2017 ASCB | EMBO Meeting
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] 新規遺伝子コード型RNAプローブを用いた単一生細胞でのmRNA動態イメージング2017

    • Author(s)
      有吉哲郎、岡田康志
    • Organizer
      第123回日本解剖学会総会・全国学術集会
    • Related Report
      2017 Research-status Report
  • [Patent(Industrial Property Rights)] 蛍光発生核酸分子、及び標的RNAの蛍光標識方法2018

    • Inventor(s)
      有吉哲郎、岡田康志
    • Industrial Property Rights Holder
      有吉哲郎、岡田康志
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report

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Published: 2017-04-28   Modified: 2020-03-30  

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