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Engineering of a redox enzyme processively decomposing crystalline polysaccharide

Research Project

Project/Area Number 17K19213
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Biomolecular chemistry and related fields
Research InstitutionInstitute for Molecular Science (2018)
Okazaki Research Facilities, National Institutes of Natural Sciences (2017)

Principal Investigator

IINO RYOTA  分子科学研究所, 生命・錯体分子科学研究領域, 教授 (70403003)

Project Period (FY) 2017-06-30 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2017: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords分子モーター / キチナーゼ / 結晶性キチン / バイオマス / 1分子イメージング / タンパク質工学 / 1分子計測
Outline of Final Research Achievements

The following 2 subjects were set to be a goal in this study. A) Quantitative measurement of the elementary steps of LPMO, a redox enzyme that degrades crystalline polysaccharides, by single-molecule fluorescence imaging, and elucidation of its operation mechanism. B) Engineering of non-natural oligomeric LPMO by fusing with artificial coiled-coil proteins, that surpasses the wild-type enzyme. Regarding the subject A, following results were obtained for the first time. 1. The presence of the co-substrate hydrogen peroxide facilitates the binding of LPMO to crystalline chitin. 2. Activated LPMO binds to crystalline chitin for several seconds for degradation. 3. The chitin degradation reaction by LPMO is not processive, and LPMO dissociates after single catalysis. The subject B is still in progress, because non-natural molecules that show higher degradation activity than the wild-type have not been obtained yet.

Academic Significance and Societal Importance of the Research Achievements

セルロースやキチンといった結晶性多糖は、地球上に大量に存在し燃料に変換可能なバイオマスである。しかしながら、その物理的・化学的安定性からオリゴ糖への分解が容易でなく有効利用されていない。このため、常温常圧の穏やかな条件で結晶性多糖を分解する糖質分解酵素が基礎・応用の両面で研究されている。LPMOは、これらの中で最も高いオリゴ糖生成活性を示す酵素として注目を集めている。本研究で明らかとなったLPMOの作動機構に基づき、野生型よりも高い分解活性を持つ非天然酵素が創成されることが期待され、将来は結晶性多糖バイオマスの有効利用の促進につながると期待される。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (8 results)

All 2019 2018 2017 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (5 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Remarks (1 results)

  • [Journal Article] Plasmid-based one-pot saturation mutagenesis and robot-based automated screening for protein engineering2018

    • Author(s)
      Kawai F, Nakamura A, Visootsat A, Iino R
    • Journal Title

      ACS Omega

      Volume: 3 Issue: 7 Pages: 7715-7726

    • DOI

      10.1021/acsomega.8b00663

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Large-Scale Femtoliter Droplet Array for Single Cell Efflux Assay of Bacteria2018

    • Author(s)
      Iino Ryota、Sakakihara Shouichi、Matsumoto Yoshimi、Nishino Kunihiko
    • Journal Title

      Methods in Molecular Biology

      Volume: 1700 Pages: 331-341

    • DOI

      10.1007/978-1-4939-7454-2_18

    • ISBN
      9781493974528, 9781493974542
    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] Quantitative Analysis of Chitin Degradation by Copper-Dependent Lytic Polysaccharide Monooxygenase2019

    • Author(s)
      Siti Mastura Zakaria, Akihiko Nakamura, Yasuko Okuni, Mayuko Yamamoto, Akasit Visootsat, Jun Ando, Ryota Iino
    • Organizer
      平成30年度 生物物理学会中部支部 講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Biochemical and single-molecule imaging analyses of high and low activity mutants of Serratia marcescens Chitinase A2019

    • Author(s)
      Akasit VISOOTSAT, Paul VIGNON, Akihiko NAKAMURA, Ryota IINO
    • Organizer
      平成30年度 生物物理学会中部支部 講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Single-molecule fluorescence imaging analysis of Serratia marcescens ChitinaseA (SmChiA) Trp-active mutant2018

    • Author(s)
      VISOOTSAT Akasit, VIGNON Paul, 中村 彰彦, 飯野 亮太
    • Organizer
      日本生物物理学会第56回年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Operation and design principles of protein molecular motors2018

    • Author(s)
      Ryota Iino
    • Organizer
      The 2nd IMS-NANOTEC Joint Research Meeting
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 機動分子科学:生体分子、人工分子を超えて2017

    • Author(s)
      飯野亮太
    • Organizer
      第17回蛋白質科学会年会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Remarks] 自然科学研究機構 分子科学研究所 飯野グループ

    • URL

      https://groups.ims.ac.jp/organization/iino_g/index.html

    • Related Report
      2018 Annual Research Report 2017 Research-status Report

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Published: 2017-07-21   Modified: 2020-03-30  

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