Development of a method to acquire transome at once
Project/Area Number |
17K19356
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Research Category |
Grant-in-Aid for Challenging Research (Exploratory)
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Allocation Type | Multi-year Fund |
Research Field |
Molecular and Genome biology and related fields
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Research Institution | Kyushu University |
Principal Investigator |
Ohkawa Yasuyuki 九州大学, 生体防御医学研究所, 教授 (80448430)
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Project Period (FY) |
2017-06-30 – 2019-03-31
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Project Status |
Completed (Fiscal Year 2018)
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Budget Amount *help |
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2017: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
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Keywords | マルチオミクス / トランスクリプトミクス / クロマチン / 次世代シークエンサー / 定量生物学 / エピゲノム / トランスオミクス / バイオテクノロジー / ゲノム / 遺伝子 |
Outline of Final Research Achievements |
The genetic information in cells is encoded by genes on the genome DNA. Cell in the human body have the same genetic information, and selective gene expression is essential for cells to acquire their individual functions, to form specific tissues. To understand this selective gene expression, it is essential to elucidate a set of events of transcription on chromatin,such as binding of transcription factor, histone modification and chromatin remodeling, binding to RNA polymerase II locus. To analyze this dynamic events in transcrition, it is critical to develop new technology to multi-layered analysis including a measurement of RNA amount and epigenome state using the same sample. In this study, we approached to develop a new transomics methods that could measure across layers.
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Academic Significance and Societal Importance of the Research Achievements |
疾病等の根治的治療のためには、疾病の原因あるいは標的となる細胞を単一細胞レベルで解析する精度の高い理解が必要である。現在までに取得可能な情報はトランスクリプトームや一部の情報に限られていた。本研究は、その手法を拡張し、生体内のゲノムからタンパク質までの解析を可能にする技術的基盤の構築を行った。本研究の成果により早期に包括的な単一細胞解析の開発が期待できる。
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Report
(3 results)
Research Products
(69 results)
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[Journal Article] miR-124 dosage regulates prefrontal cortex function by dopaminergic modulation.2019
Author(s)
Kozuka T, Omori Y, Watanabe S, Tarusawa E, Yamamoto H, Chaya T, Furuhashi M, Morita M, Sato T, Hirose S, Ohkawa Y, Yoshimura Y, Hikida T, Furukawa T.
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Journal Title
Sci Rep.
Volume: Mar 5;9(1)
Issue: 1
Pages: 3445-3445
DOI
NAID
Related Report
Peer Reviewed / Open Access
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[Journal Article] Ad4BP/SF-1 regulates cholesterol synthesis to boost the production of steroids2018
Author(s)
Takashi Baba, Hiroyuki Otake, Miki Inoue, Tetsuya Sato, Yasuhiro Ishihara, Ju-Yeon Moon, Megumi Tsuchiya, Kanako Miyabayashi, Hidesato Ogawa, Yuichi Shima, Lixiang Wang, Ryuichiro Sato, Takeshi Yamazaki, Mikita Suyama, Masatoshi Nomura, Man Ho Choi, Yasuyuki Ohkawa & Ken-ichirou Morohashi
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Journal Title
Communications Biology
Volume: 1
Issue: 1
Pages: 1-9
DOI
NAID
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Histone methyltransferase G9a is a key regulator of the starvation-induced behaviors in Drosophila melanogaster.2017
Author(s)
Shimaji, K., Tanaka, R., Maeda, T., Ozaki, M., Yoshida, H., Ohkawa, Y., Sato, T., Suyama, M. and Yamaguchi, M.
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Journal Title
Scientific Reports
Volume: 7
Issue: 1
Pages: 14763-14763
DOI
NAID
Related Report
Peer Reviewed / Open Access
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[Journal Article] Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.82017
Author(s)
Taguchi H, Xie Y, Horikoshi N, Maehara K, Harada A, Nogami J, Sato K, Arimura Y, Osakabe A, Kujirai T, Iwasaki T, Semba Y, Tachibana T, Kimura H, Ohkawa Y, Kurumizaka H.
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Journal Title
Biochemistry
Volume: 56
Issue: 16
Pages: 2184-2196
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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[Journal Article] Thymine DNA glycosylase modulates the DNA damage response and gene expression by base excision repair-dependent and -independent mechanisms2017
Author(s)
Tomohumi Nakamura, Kouichi Murakami, Haruto Tada, Yoshihiko Uehara, Jumpei Nogami, Kazumitsu Maehara, Yasuyuki Ohkawa, Hisato Saitoh, Hideo Nishitani, Tetsuya Ono, Ryotaro Nishi, Masayuki Yokoi, Wataru Sakai, and Kaoru Sugasawa
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Journal Title
Genes to Cells
Volume: 22
Issue: 4
Pages: 392-405
DOI
Related Report
Peer Reviewed / Open Access / Int'l Joint Research
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[Journal Article] Crystal structure of the overlapping dinucleosome composed of hexasome and octasome2017
Author(s)
Daiki Kato, Akihisa Osakabe, Yasuhiro Arimura, Yuka Mizukami, Naoki Horikoshi, Kazumi Saikusa, Satoko Akashi, Yoshifumi Nishimura, Sam-Yong Park, Jumpei Nogami, Kazumitsu Maehara, Yasuyuki Ohkawa, Atsushi Matsumoto, Hidetoshi Kono, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka
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Journal Title
Science
Volume: 356
Issue: 6334
Pages: 205-208
DOI
Related Report
Peer Reviewed / Open Access / Acknowledgement Compliant
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