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Evolution of metabolic pathway

Research Project

Project/Area Number 17K19420
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Ecology and Evolution (including anthropology), and related fields
Research InstitutionHokkaido University

Principal Investigator

TANAKA Ayumi  北海道大学, 低温科学研究所, 特任教授 (10197402)

Project Period (FY) 2017-06-30 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2018: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2017: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords進化 / 酵素 / 植物
Outline of Final Research Achievements

From phylogenetic and enzymological analysis of Mg-dechelating enzyme (SGR), the following scenarios for the evolution of the enzyme were proposed.
1. Promiscuous activity is fluctuating, and some activities are higher than the primary activity of the experts. 2. Genes with high promiscuous activity is horizontally transferred to a new organism. 3. Promiscuous activity can play a physiological role in the new organism. 4. Then the enzyme acquire substrate specificity and various regulatory mechanisms and the promiscuous activity becomes to be a primary activity and the new enzyme appears.
On the other hand, I also showed that the same enzyme evolved to have different functions depending on the organism.

Academic Significance and Societal Importance of the Research Achievements

新しい代謝経路の誕生は生物に新しい機能を付加し、生物の多様性と進化において中心的な役割を担ってきた。そのため、代謝経路を担う酵素が如何に誕生し進化してきたかは生物を理解する上で極めて重要な点である。一方、酵素は生物のみならず産業的にも大きな役割と可能性を秘めており、試験管内で酵素を進化させ、新しい有用な酵素を作出することが試みられている。本研究は酵素の多様な機能の源泉となっているPromiscuousな活性に揺らぎがあることを示した。これは酵素の進化や作出に関する新しい考え方を示したものであり、上記の研究に貢献することが期待される。

Report

(3 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • Research Products

    (34 results)

All 2019 2018 2017 Other

All Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 7 results,  Open Access: 2 results) Presentation (25 results) (of which Int'l Joint Research: 6 results,  Invited: 6 results) Remarks (2 results)

  • [Journal Article] Mg-dechelatase is involved in the formation of photosystem II but not in chlorophyll degradation in Chlamydomonas reinhardtii2019

    • Author(s)
      Chen Ying、Shimoda Yousuke、Yokono Makio、Ito Hisashi、Tanaka Ayumi
    • Journal Title

      The Plant Journal

      Volume: 97 Issue: 6 Pages: 1022-1031

    • DOI

      10.1111/tpj.14174

    • NAID

      120006803955

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of excitation energy in Nannochloropsis photosystem II2019

    • Author(s)
      Yokono M, Umetani I, Takabayashi A, Akimoto S, Tanaka A.
    • Journal Title

      Photosynth. Res.

      Volume: 139 Issue: 1-3 Pages: 155-161

    • DOI

      10.1007/s11120-018-0510-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Comparative analyses of whole-genome protein sequences from multiple organisms.2018

    • Author(s)
      Yokono Makio, Satoh Soichirou and Tanaka Ayumi
    • Journal Title

      Scientific Report

      Volume: 8 Issue: 1 Pages: 6800-6800

    • DOI

      10.1038/s41598-018-25090-8

    • NAID

      120006471035

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpression of the protein disulfide isomerase AtCYO1 in chloroplasts slows dark-induced senescence in Arabidopsis2018

    • Author(s)
      Tominaga Jun、Nakahara Yasutoshi、Horikawa Daisuke、Tanaka Ayumi、Kondo Maki、Kamei Yasuhiro、Takami Tsuneaki、Sakamoto Wataru、Unno Kazutoshi、Sakamoto Atsushi、Shimada Hiroshi
    • Journal Title

      BMC Plant Biology

      Volume: 18 Issue: 1 Pages: 80-80

    • DOI

      10.1186/s12870-018-1294-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice2018

    • Author(s)
      Yamatani Hiroshi、Kohzuma Kaori、Nakano Michiharu、Takami Tsuneaki、Kato Yusuke、Hayashi Yoriko、Monden Yuki、Okumoto Yutaka、Abe Tomoko、Kumamaru Toshihiro、Tanaka Ayumi、Sakamoto Wataru、Kusaba Makoto
    • Journal Title

      J Exp Bot.

      Volume: 69 Issue: 5 Pages: 1027-1035

    • DOI

      10.1093/jxb/erx468

    • NAID

      120006466618

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mg-dechelation of chlorophyll a by Stay-Green activates chlorophyll b degradation through expressing Non-Yellow Coloring 1 in Arabidopsis thaliana2018

    • Author(s)
      Sato Tomoaki、Shimoda Yousuke、Matsuda Kaori、Tanaka Ayumi、Ito Hisashi
    • Journal Title

      Journal of Plant Physiology

      Volume: 222 Pages: 94-102

    • DOI

      10.1016/j.jplph.2018.01.010

    • NAID

      120006803940

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Deficiency of the Stroma-Lamellar Protein LIL8/PSB33 Affects Energy Transfer Around PSI in Arabidopsis2017

    • Author(s)
      Kato Yukako、Yokono Makio、Akimoto Seiji、Takabayashi Atsushi、Tanaka Ayumi、Tanaka Ryouichi
    • Journal Title

      Plant and Cell Physiology

      Volume: 58 Issue: 11 Pages: 2026-2039

    • DOI

      10.1093/pcp/pcx124

    • NAID

      120006533129

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Presentation] ポプラにおけるクロロフィル分解を介したエチレンの発生と落葉2019

    • Author(s)
      伊藤 寿、荒川圭太、田中 歩
    • Organizer
      60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Effects of chlorophyll degradation by Stay-Green on senescence in Arabidopsis2019

    • Author(s)
      Ying Chen, Ayumi Tanaka, Hisashi Ito
    • Organizer
      60回日本植物生理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Tree of lifeの構築と植物の進化2018

    • Author(s)
      田中 歩
    • Organizer
      2018年度北海道植物学会大会および総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Regulation of the stability of light-harvesting complexes by chlorophyll degradation enzymes2018

    • Author(s)
      Ayumi Tanaka
    • Organizer
      1st Asia-Oceania International Congress on Photosynthesis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of Chlorophyll Metabolism by Mg-Dechelatase2018

    • Author(s)
      Ayumi Tanaka
    • Organizer
      Gordon Research Conference-Chemistry and Biology of Tetrapyrroles
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] クロロフィルaのMgを脱離する酵素STAY-GREEN(SGR)2018

    • Author(s)
      小畑大地、田中 歩、伊藤 寿
    • Organizer
      第9回日本光合成学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ヒメツリガネゴケの光化学系I-II超複合体の解析2018

    • Author(s)
      高林厚史、古川 亮、田中亮一、田中 歩、藤田知道、秋本誠志、横野牧生
    • Organizer
      第9回日本光合成学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] クロロフィルの分解とジャスモン酸の関係2018

    • Author(s)
      伊藤 寿、田中 歩
    • Organizer
      第9回日本光合成学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] PSI-NPQ in higher plants2018

    • Author(s)
      Makio Yokono, Atsushi Takabayashi, Junko Kishimoto, Tomomichi Fujita, Masakazu Iwai, Akio Murakami, Seiji Akimoto, Ayumi Tanaka
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] The effect of chlorophyll degradation by SGR on senescence2018

    • Author(s)
      Ying Chen, Yousuke Shimoda, Ayumi Tanaka, Hisashi Ito
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] クロロフィル a の Mg を脱離する酵素 SGR の触媒機構解析2018

    • Author(s)
      小畑大地、田中 歩、伊藤 寿
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] ヒメツリガネゴケの PSI-PSII 超複合体の解析2018

    • Author(s)
      古川 亮、横野牧生、秋本誠志、藤田知道、高林厚史、田中 歩
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] クロロフィル合成酵素と光化学系 II アセンブリ複合体は相互作用をしているのか?2018

    • Author(s)
      高橋小春、明賀史純、小澤真一郎、篠崎一雄、高橋裕一郎、田中 歩、高林厚史、田中亮一
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Intracellular location of β-carotene ketolase in Haematococcus pluvialis2018

    • Author(s)
      Hyunseok Lim, Samuel Koh, Hisashi Ito, Szilvia Nagy, Taichi Takasuka, Ayumi Tanaka, Yoshiki Nishimura, Ryouichi Tanaka
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] イネstay-green突然変異体dye1の分子遺伝学的解析2018

    • Author(s)
      山谷浩史、上妻馨梨、中野道治、高見常明、加藤裕介、林 依子、門田有希、奥本 裕、阿部知子、熊丸敏博、田中 歩、坂本 亘、草場 信
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] SGR によるクロロフィル分解が引き起こすジャスモン酸とエチレンの増加2018

    • Author(s)
      木村円香、松浦英幸、田中 歩、伊藤 寿
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] Photoprotection mechanisms of the drought-tolerant Jatropha curcas plant2018

    • Author(s)
      Helena Sapeta, Makio Yokono, Atsushi Takabayashi, Yoshifumi Ueno, Seiji Akimoto, Junko Kishimoto, Ayumi Tanaka, M. Margarida Oliveira, Ryouichi Tanaka
    • Organizer
      第59回日本植物生理学会年会
    • Related Report
      2017 Research-status Report
  • [Presentation] 緑色植物のPSI-PSII超複合体2017

    • Author(s)
      横野牧生、高林厚史、岸本純子、藤田知道、岩井優和、村上明男、秋本誠志、田中歩
    • Organizer
      第8回日本光合成学会年会およびシンポジウム
    • Related Report
      2017 Research-status Report
  • [Presentation] Mg-dechelatase contributes to the formation and the degradation of photosystems.2017

    • Author(s)
      Ayumi Tanaka
    • Organizer
      Chloroplast Metabolism and Photosynthesis Meeting
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] クロロフィル代謝の機能と進化2017

    • Author(s)
      田中 歩
    • Organizer
      第 25 回 「光合成セミナー2017:反応中心と色素系の多様性」
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] ストロマラメラに局在するLight-harvesting-likeタンパク質LIL8の機能解析。光合成に関する植物(シロイヌナズナ)の変異体を生化学的、分光学的に解析2017

    • Author(s)
      Yukako Kato, Makio Yokono, Seiji Akimoto, Atsushi Takabayashi, Ayumi Tanaka, Ryouichi Tanaka
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Intracellular localization of β-carotene ketolase in Haematococcus pluvialis2017

    • Author(s)
      Samuel Wee Han Koh, Hisashi Ito, Ayumi Tanaka, Yoshiki Nishimura, Ryouichi Tanaka
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] Photoprotection mechanisms of the drought-tolerant Jatropha curcas plant2017

    • Author(s)
      Helena Sapeta, Makio Yokono, Atsushi Takabayashi, Seiji Akimoto, Junko Kishimoto, Ayumi Tanaka, M. Margarida Oliveira, Ryouichi Tanaka
    • Organizer
      Taiwan-Japan Plant Biology 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Deficiency of the Stroma-lamellar Protein LIL8/PSB33 Affects the Dynamics of Light-harvesting Complexes and Energy Transfer around Photosystem I in Arabidopsis2017

    • Author(s)
      Yukako Kato, Makio Yokono, Seiji Akimoto, Atsushi Takabayashi, Ayumi Tanaka, Ryouichi Tanaka
    • Organizer
      Taiwan-Japan Plant Biology 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] The role of chlorophyll metabolism in the formation and degradation of photosystems2017

    • Author(s)
      Ayumi Tanaka
    • Organizer
      8th Asia and Oceania Conference on Photobiology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] 研究室HP

    • URL

      http://www.lowtem.hokudai.ac.jp/plantadapt/index.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 北海道大学低温科学研究所生物適応研究室

    • URL

      http://www.lowtem.hokudai.ac.jp/plantadapt/index.html

    • Related Report
      2017 Research-status Report

URL: 

Published: 2017-07-21   Modified: 2020-03-30  

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