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Exploration of gene regulatory systems rewired by mammalian transposable elements.

Research Project

Project/Area Number 17K19424
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Research Field Ecology and Evolution (including anthropology), and related fields
Research InstitutionTokyo Institute of Technology

Principal Investigator

Nishihara Hidenori  東京工業大学, 生命理工学院, 助教 (10450727)

Project Period (FY) 2017-06-30 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2019: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2018: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords転移因子 / 哺乳類 / 乳腺 / 発現制御 / レトロポゾン / 発現制御システム / 進化
Outline of Final Research Achievements

This study revealed that transposable elements such as retroposons amplified the seed sequences for cis-regulatory elements involved in mammalian morphological evolution by increasing binding sites for various transcription factors. In particular, one-third of the enhancers to which transcriptional activators essential for mammary gland formation bind were derived from transposable elements. These were caused by the two-phased amplifications of retroposons in the common ancestors of eutherians and simian primates. Thus, retroposon-mediated functional sequence expansion contributed profoundly to the common mammalian morphological evolution. Through this study, it was shown that transposable elements had a significant impact on the evolution of large-scale gene regulatory mechanisms.

Academic Significance and Societal Importance of the Research Achievements

一般に転写活性化因子の結合サイトの新規獲得は単純な塩基置換の蓄積で説明されることが多い。転移因子がゲノム中で数万コピーもの結合サイトを増幅する可能性は以前から指摘されていたが、生物進化におけるその寄与の程度は分かっていなかった。今回その割合とともに哺乳類共通の形態進化に関わるシス調節配列の増大に寄与したことを初めて明らかにした。これにより発現調節ネットワークの改変とそれに伴う形態進化には従来考えられてきたような塩基置換だけでなく転移因子の増幅が深く関係することが明らかになり、今後転移因子の存在意義と生物進化における影響を再考する上で極めて重要な知見となった。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Research-status Report
  • 2019 Research-status Report
  • 2018 Research-status Report
  • 2017 Research-status Report
  • Research Products

    (16 results)

All 2022 2021 2019 2018 2017

All Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 6 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results)

  • [Journal Article] Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells2022

    • Author(s)
      Namba Yurika、Iwasaki Yuka W.、Nishida Kazumichi M.、Nishihara Hidenori、Sumiyoshi Tetsutaro、Siomi Mikiko C.
    • Journal Title

      iScience

      Volume: 25 Issue: 3 Pages: 103914-103914

    • DOI

      10.1016/j.isci.2022.103914

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process2021

    • Author(s)
      Nishihara Hidenori、Stanyon Roscoe、Tanabe Hideyuki、Koga Akihiko
    • Journal Title

      Genes to Cells

      Volume: 26 Issue: 12 Pages: 979-986

    • DOI

      10.1111/gtc.12898

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation2021

    • Author(s)
      Ishino Kyoko、Hasuwa Hidetoshi、Yoshimura Jun、Iwasaki Yuka W、Nishihara Hidenori、Seki Naomi M、Hirano Takamasa、Tsuchiya Marie、Ishizaki Hinako、Masuda Harumi、Kuramoto Tae、Saito Kuniaki、Sakakibara Yasubumi、Toyoda Atsushi、Itoh Takehiko、Siomi Mikiko C、Morishita Shinichi、Siomi Haruhiko
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Issue: 5 Pages: 2700-2720

    • DOI

      10.1093/nar/gkab059

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transposable elements as genetic accelerators of evolution: contribution to genome size, gene regulatory network rewiring and morphological innovation2019

    • Author(s)
      Hidenori Nishihara
    • Journal Title

      Genes & Genetic Systems

      Volume: 94 Issue: 6 Pages: 269-281

    • DOI

      10.1266/ggs.19-00029

    • NAID

      130007791989

    • ISSN
      1341-7568, 1880-5779
    • Year and Date
      2019-12-01
    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Retrotransposons spread potential cis-regulatory elements during mammary gland evolution2019

    • Author(s)
      Hidenori Nishihara
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Pages: 11551-11562

    • DOI

      10.1093/nar/gkz1003

    • Related Report
      2019 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 哺乳類の転移因子とゲノム進化研究2019

    • Author(s)
      西原秀典
    • Journal Title

      遺伝子医学

      Volume: 9 Pages: 143-149

    • Related Report
      2019 Research-status Report
  • [Journal Article] Evolutionary Origin of OwlRep, a Megasatellite DNA Associated with Adaptation of Owl Monkeys to Nocturnal Lifestyle2017

    • Author(s)
      Nishihara Hidenori、Stanyon Roscoe、Kusumi Junko、Hirai Hirohisa、Koga Akihiko
    • Journal Title

      Genome Biology and Evolution

      Volume: 10 Issue: 1 Pages: 157-165

    • DOI

      10.1093/gbe/evx281

    • NAID

      120006469173

    • Related Report
      2017 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] レトロトランスポゾンが関与した乳腺形成に関わる調節配列の多様化2019

    • Author(s)
      西原秀典
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] レトロトランスポジションが介在したエンハンサーの断続的多様化2019

    • Author(s)
      西原秀典
    • Organizer
      日本遺伝学会第91回大会
    • Related Report
      2019 Research-status Report
    • Invited
  • [Presentation] 転移因子が寄与した哺乳類の乳腺形成に関わるシス調節ネットワークの進化2018

    • Author(s)
      西原秀典
    • Organizer
      遺伝研研究集会「転移因子と宿主の相互作用による生命機能と進化」
    • Related Report
      2018 Research-status Report
    • Invited
  • [Presentation] レトロトランスポゾンがもたらしたシス調節配列の拡大と哺乳類の乳腺進化2018

    • Author(s)
      西原秀典
    • Organizer
      Tokyo Vertebrate Morphology Meeting
    • Related Report
      2018 Research-status Report
  • [Presentation] Retrotransposons spread potential cis‐regulatory elements during mammary gland evolution2018

    • Author(s)
      Hidenori Nishihara
    • Organizer
      SMBE Meeting 2018
    • Related Report
      2018 Research-status Report
    • Int'l Joint Research
  • [Presentation] Transposable elements spread potential cis‐regulatory sources for mammary gland evolution2017

    • Author(s)
      Hidenori Nishihara
    • Organizer
      FASEB meeting "Mobile DNA in Mammalian Genomes"
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] レトロトランスポゾンの増幅がもたらしたシス制御システムの多様性2017

    • Author(s)
      西原秀典
    • Organizer
      日本進化学会第19回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] シス制御システムの進化をもたらした転移因子の重要性2017

    • Author(s)
      西原秀典
    • Organizer
      日本遺伝学会第89回大会
    • Related Report
      2017 Research-status Report
  • [Presentation] 転移因子レトロトランスポゾンが拡大させたシス制御配列の多様性2017

    • Author(s)
      西原秀典
    • Organizer
      ConBio2017
    • Related Report
      2017 Research-status Report

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Published: 2017-07-21   Modified: 2023-01-30  

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